MELO3C007381 (gene) Melon (DHL92) v4

Overview


Name	MELO3C007381
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Patatin
Location	chr08: 2436564 .. 2437245 (+)
RNA-Seq Expression	MELO3C007381
Synteny	MELO3C007381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCCACAAAAGTCCTCGAGGAAAGGGCCATTTTTTTTCCGCTTCAATTTGGAGTAAATGTATAAAGGAATGAGCAGAAGCAGAAGCTTCAGTGAGAAAATGGGTGGTGCTGTTGCTCCACTTGCAATTGGCACACGAGGCACTGTGGGGTCGCTGGTGATGAAGGAGATTGAGTACTTTACCAACCTTGAGCTCGAACGCCATGGCAGTTCTCACACTATCCGTGGAAATGCTTTGAGGAGAAGTGATTCTAAAGGAAGCTTTTGGCTTTTGTCATTGACTTGGAAGTGGAAGAAGAGAAAAAACAACAATGGGATTCTCCCTAACATTTCCTCTGCTGTTGAATTCTCAAAAAGCAATCGCTTTAATGGGATTCCTGGTTTTGGTTACAGGATTCTCAAAGATGACTTTCCCATTTGATTTTTTATTTCTTACTTCAATTCAAAAGAGTCTTCTTTTCTTTTCTTCTTCTTTTTCTTTTTTGTTGAATTGCTTTCCTTTGCTCTGTTTTTGTCCTTCATTTTGAGGTTTGCAATGTTTTGACTGGAAAAGGAAATAAGAATTCTGTTGCTGATTTGATTGAAATTAGACACTGTTCTAAAGAAGATTGTATTTGGAACTATCATTGATCTTTTCTTTCTTCTTCTTCTTTATTCGAGTAATATTTGTAGCTTGAATCAAC

mRNA sequence

AACCCACAAAAGTCCTCGAGGAAAGGGCCATTTTTTTTCCGCTTCAATTTGGAGTAAATGTATAAAGGAATGAGCAGAAGCAGAAGCTTCAGTGAGAAAATGGGTGGTGCTGTTGCTCCACTTGCAATTGGCACACGAGGCACTGTGGGGTCGCTGGTGATGAAGGAGATTGAGTACTTTACCAACCTTGAGCTCGAACGCCATGGCAGTTCTCACACTATCCGTGGAAATGCTTTGAGGAGAAGTGATTCTAAAGGAAGCTTTTGGCTTTTGTCATTGACTTGGAAGTGGAAGAAGAGAAAAAACAACAATGGGATTCTCCCTAACATTTCCTCTGCTGTTGAATTCTCAAAAAGCAATCGCTTTAATGGGATTCCTGGTTTTGGTTACAGGATTCTCAAAGATGACTTTCCCATTTGATTTTTTATTTCTTACTTCAATTCAAAAGAGTCTTCTTTTCTTTTCTTCTTCTTTTTCTTTTTTGTTGAATTGCTTTCCTTTGCTCTGTTTTTGTCCTTCATTTTGAGGTTTGCAATGTTTTGACTGGAAAAGGAAATAAGAATTCTGTTGCTGATTTGATTGAAATTAGACACTGTTCTAAAGAAGATTGTATTTGGAACTATCATTGATCTTTTCTTTCTTCTTCTTCTTTATTCGAGTAATATTTGTAGCTTGAATCAAC

Coding sequence (CDS)

ATGTATAAAGGAATGAGCAGAAGCAGAAGCTTCAGTGAGAAAATGGGTGGTGCTGTTGCTCCACTTGCAATTGGCACACGAGGCACTGTGGGGTCGCTGGTGATGAAGGAGATTGAGTACTTTACCAACCTTGAGCTCGAACGCCATGGCAGTTCTCACACTATCCGTGGAAATGCTTTGAGGAGAAGTGATTCTAAAGGAAGCTTTTGGCTTTTGTCATTGACTTGGAAGTGGAAGAAGAGAAAAAACAACAATGGGATTCTCCCTAACATTTCCTCTGCTGTTGAATTCTCAAAAAGCAATCGCTTTAATGGGATTCCTGGTTTTGGTTACAGGATTCTCAAAGATGACTTTCCCATTTGA

Protein sequence

MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNALRRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI

Homology

[Close]

BLAST of MELO3C007381 vs. NCBI nr
Match: XP_008441098.1 (PREDICTED: uncharacterized protein LOC103485325 [Cucumis melo] >TYK13056.1 uncharacterized protein E5676_scaffold255G006580 [Cucumis melo var. makuwa])

HSP 1 Score: 245.7 bits (626), Expect = 2.0e-61
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60
           MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60

Query: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI
Sbjct: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

[Close]

BLAST of MELO3C007381 vs. NCBI nr
Match: XP_011658506.1 (uncharacterized protein LOC105436036 [Cucumis sativus])

HSP 1 Score: 235.0 bits (598), Expect = 3.5e-58
Identity = 114/120 (95.00%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60
           MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFT LELERHG SHTI GNAL
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGISHTISGNAL 60

Query: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RRSDS+GSFWLLSLTWKWKKRK NNG+LPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI
Sbjct: 61  RRSDSRGSFWLLSLTWKWKKRKGNNGVLPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

[Close]

BLAST of MELO3C007381 vs. NCBI nr
Match: XP_038882225.1 (uncharacterized protein LOC120073447 [Benincasa hispida])

HSP 1 Score: 229.6 bits (584), Expect = 1.5e-56
Identity = 114/120 (95.00%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60
           MYKGMSRSRSFSEKMGG VAPLAIGTRGTVGSLVMKEIEYFT LELERHG SHTI G+AL
Sbjct: 1   MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKLELERHGGSHTISGDAL 60

Query: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RRSDSKGSFWLLSLTWKWKKRKNNNGILPNI SAVEFSKSNRFNGIPGFGYRILKDDFPI
Sbjct: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 119

[Close]

BLAST of MELO3C007381 vs. NCBI nr
Match: KAE8647663.1 (hypothetical protein Csa_003863 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 4.6e-50
Identity = 104/115 (90.43%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60
           MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFT LELERHG SHTI GNAL
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGISHTISGNAL 60

Query: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPG--FGYRI 114
           RRSDS+GSFWLLSLTWKWKKRK NNG+LPNISSAVEFSKSNRFNGIP    GY+I
Sbjct: 61  RRSDSRGSFWLLSLTWKWKKRKGNNGVLPNISSAVEFSKSNRFNGIPEKVIGYKI 115

[Close]

BLAST of MELO3C007381 vs. NCBI nr
Match: XP_022977336.1 (uncharacterized protein LOC111477686 [Cucurbita maxima])

HSP 1 Score: 204.9 bits (520), Expect = 3.9e-49
Identity = 102/120 (85.00%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60
           MYKGMSRSRSFSEKM G +APLAIGTRGTVGSLVMKEIEYFT  E+ERHGSS  I G+A 
Sbjct: 1   MYKGMSRSRSFSEKMDG-IAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDAS 60

Query: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RRSD KGSFWL+SLTWKWKKRK NNGILPNI SAVE SKSNRFNGIPGF YRILK DFPI
Sbjct: 61  RRSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119

[Close]

BLAST of MELO3C007381 vs. ExPASy TrEMBL
Match: A0A5D3CRM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006580 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 9.5e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60
           MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60

Query: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI
Sbjct: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

[Close]

BLAST of MELO3C007381 vs. ExPASy TrEMBL
Match: A0A1S3B3D8 (uncharacterized protein LOC103485325 OS=Cucumis melo OX=3656 GN=LOC103485325 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 9.5e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60
           MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60

Query: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI
Sbjct: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

[Close]

BLAST of MELO3C007381 vs. ExPASy TrEMBL
Match: A0A0A0KL84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514830 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.7e-58
Identity = 114/120 (95.00%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60
           MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFT LELERHG SHTI GNAL
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGISHTISGNAL 60

Query: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RRSDS+GSFWLLSLTWKWKKRK NNG+LPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI
Sbjct: 61  RRSDSRGSFWLLSLTWKWKKRKGNNGVLPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

[Close]

BLAST of MELO3C007381 vs. ExPASy TrEMBL
Match: A0A6J1IJL8 (uncharacterized protein LOC111477686 OS=Cucurbita maxima OX=3661 GN=LOC111477686 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.9e-49
Identity = 102/120 (85.00%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60
           MYKGMSRSRSFSEKM G +APLAIGTRGTVGSLVMKEIEYFT  E+ERHGSS  I G+A 
Sbjct: 1   MYKGMSRSRSFSEKMDG-IAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDAS 60

Query: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RRSD KGSFWL+SLTWKWKKRK NNGILPNI SAVE SKSNRFNGIPGF YRILK DFPI
Sbjct: 61  RRSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119

[Close]

BLAST of MELO3C007381 vs. ExPASy TrEMBL
Match: A0A6J1EEE9 (uncharacterized protein LOC111433571 OS=Cucurbita moschata OX=3662 GN=LOC111433571 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 5.1e-47
Identity = 100/123 (81.30%), Postives = 108/123 (87.80%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60
           MY+G+SRS SFSE+M GAVAPLAIGTRGT+GSLVMKEIEYFT LELERHG S  + G+A 
Sbjct: 1   MYEGISRSSSFSEEM-GAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDAS 60

Query: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDD--- 120
           RRSDSK SFWLLSL+WKWKKR+ NNGILPNI SAVE SKSNRFNGIPGFGYRILKDD   
Sbjct: 61  RRSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDDVTH 120

[Close]

BLAST of MELO3C007381 vs. TAIR 10
Match: AT4G21780.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 78.2 bits (191), Expect = 5.1e-15
Identity = 48/109 (44.04%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 20  APLAIGTRGTVGSLVMKEIEYFTNLEL------ERHGSSHTIRGNALR--RSDSKGSFWL 79
           AP+AIGTRGT+GSLV KEI+YF N          R G+S   +    +  RS S+   W 
Sbjct: 3   APIAIGTRGTIGSLVRKEIDYFKNFSTCHPQFDPRRGNSEENKNTFKQRDRSSSRLGSWF 62

Query: 80  LSLTWKWKKRKNNNG---ILPNISSAVEFSKSNRFNGIPGFGYRILKDD 118
               W+ KKR+   G     P++ SAVE S  NR   +PGF YRILK D
Sbjct: 63  SKTKWRKKKRQTRGGGGKFFPSMCSAVEVSGENR---VPGFNYRILKSD 108

The following BLAST results are available for this feature:

BLAST of MELO3C007381 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441098.1	2.0e-61	100.00	PREDICTED: uncharacterized protein LOC103485325 [Cucumis melo] >TYK13056.1 uncha...	[more]
XP_011658506.1	3.5e-58	95.00	uncharacterized protein LOC105436036 [Cucumis sativus]	[more]
XP_038882225.1	1.5e-56	95.00	uncharacterized protein LOC120073447 [Benincasa hispida]	[more]
KAE8647663.1	4.6e-50	90.43	hypothetical protein Csa_003863 [Cucumis sativus]	[more]
XP_022977336.1	3.9e-49	85.00	uncharacterized protein LOC111477686 [Cucurbita maxima]	[more]

BLAST of MELO3C007381 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C007381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CRM5	9.5e-62	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B3D8	9.5e-62	100.00	uncharacterized protein LOC103485325 OS=Cucumis melo OX=3656 GN=LOC103485325 PE=...	[more]
A0A0A0KL84	1.7e-58	95.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514830 PE=4 SV=1	[more]
A0A6J1IJL8	1.9e-49	85.00	uncharacterized protein LOC111477686 OS=Cucurbita maxima OX=3661 GN=LOC111477686...	[more]
A0A6J1EEE9	5.1e-47	81.30	uncharacterized protein LOC111433571 OS=Cucurbita moschata OX=3662 GN=LOC1114335...	[more]

BLAST of MELO3C007381 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21780.1	5.1e-15	44.04	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35131:SF1	EXPRESSED PROTEIN	coord: 7..117
None	No IPR available	PANTHER	PTHR35131	EXPRESSED PROTEIN	coord: 7..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C007381.1	MELO3C007381.1	mRNA