MELO3C032724 (gene) Melon (DHL92) v4

Overview
NameMELO3C032724
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGlobal transcription factor
Locationchr07: 14369670 .. 14369864 (-)
RNA-Seq ExpressionMELO3C032724
SyntenyMELO3C032724
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCGGGAAAACCTAGGCCTTTCCCGACGCACACTTATGGCGTCGGAAAAACCTACGCCTTGGGCATACCCCTTATTTCTCATGTGAGGCTTGTCCCGATGCATTACTTACGGCATCGGGAATACCCCTTATTTCCCGACGTCTTGTGCCCGACGCATGAATTGTGCATCAGGAAAACCTCTTATTCCTGA

mRNA sequence

ATGGCGTCGGGAAAACCTAGGCCTTTCCCGACGCACACTTATGGCGTCGGAAAAACCTACGCCTTGGGCATACCCCTTATTTCTCATGTGAGGCTTGTCCCGATGCATTACTTACGGCATCGGGAATACCCCTTATTTCCCGACGTCTTGTGCCCGACGCATGAATTGTGCATCAGGAAAACCTCTTATTCCTGA

Coding sequence (CDS)

ATGGCGTCGGGAAAACCTAGGCCTTTCCCGACGCACACTTATGGCGTCGGAAAAACCTACGCCTTGGGCATACCCCTTATTTCTCATGTGAGGCTTGTCCCGATGCATTACTTACGGCATCGGGAATACCCCTTATTTCCCGACGTCTTGTGCCCGACGCATGAATTGTGCATCAGGAAAACCTCTTATTCCTGA

Protein sequence

MASGKPRPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPTHELCIRKTSYS
Homology
BLAST of MELO3C032724 vs. NCBI nr
Match: TYK14842.1 (transcription factor GTE10 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 1.3e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 1   MASGKPRPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPTHELCIRK 60
           MASGKPRPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPTHELCIRK
Sbjct: 138 MASGKPRPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPTHELCIRK 197

Query: 61  TSYS 65
           TSYS
Sbjct: 198 TSYS 201

BLAST of MELO3C032724 vs. NCBI nr
Match: KAA0053449.1 (transcription factor GTE8-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 2.0e-28
Identity = 63/71 (88.73%), Postives = 64/71 (90.14%), Query Frame = 0

Query: 1   MASGKPR-------PFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT 60
           MASGKPR       PFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT
Sbjct: 144 MASGKPRPFPMPYLPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT 203

Query: 61  HELCIRKTSYS 65
           HELC+RKTSYS
Sbjct: 204 HELCVRKTSYS 214

BLAST of MELO3C032724 vs. NCBI nr
Match: TYK00324.1 (uncharacterized protein E5676_scaffold1923G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 7.1e-26
Identity = 57/64 (89.06%), Postives = 59/64 (92.19%), Query Frame = 0

Query: 1   MASGKPRPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPTHELCIRK 60
           MAS KP+PFPTHTYGVGKTYALGIPLISHVRLVP HYLR REYPLF DVLCPTHELC+ K
Sbjct: 174 MASEKPKPFPTHTYGVGKTYALGIPLISHVRLVPTHYLRRREYPLFSDVLCPTHELCVGK 233

Query: 61  TSYS 65
           TSYS
Sbjct: 234 TSYS 237

BLAST of MELO3C032724 vs. NCBI nr
Match: KAA0045152.1 (global transcription factor [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 55/71 (77.46%), Postives = 57/71 (80.28%), Query Frame = 0

Query: 1   MASGKPRP-------FPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT 60
           MASGKPRP       FPTHTYGVGKTY LGIPLISHVRLVP HYLRH EYP FP+VLCPT
Sbjct: 156 MASGKPRPFPTLYLSFPTHTYGVGKTYVLGIPLISHVRLVPTHYLRHWEYPFFPNVLCPT 215

Query: 61  HELCIRKTSYS 65
           HEL + K SYS
Sbjct: 216 HELFVGKISYS 226

BLAST of MELO3C032724 vs. NCBI nr
Match: TYK08286.1 (global transcription factor [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 9.3e-18
Identity = 51/70 (72.86%), Postives = 53/70 (75.71%), Query Frame = 0

Query: 2   ASGKPR-------PFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPTH 61
           ASGKPR       PFPTHTY V KTYALGIPLISHVRLVP HYL  REYPLF DVL PT+
Sbjct: 59  ASGKPRSFPTHYLPFPTHTYDVKKTYALGIPLISHVRLVPTHYLWRREYPLFSDVLWPTY 118

Query: 62  ELCIRKTSYS 65
           +LC  KTS S
Sbjct: 119 KLCAGKTSDS 128

BLAST of MELO3C032724 vs. ExPASy TrEMBL
Match: A0A5D3CTR7 (Transcription factor GTE10 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold461G00070 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 6.1e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 1   MASGKPRPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPTHELCIRK 60
           MASGKPRPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPTHELCIRK
Sbjct: 138 MASGKPRPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPTHELCIRK 197

Query: 61  TSYS 65
           TSYS
Sbjct: 198 TSYS 201

BLAST of MELO3C032724 vs. ExPASy TrEMBL
Match: A0A5A7UJ17 (Transcription factor GTE8-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G001270 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 9.7e-29
Identity = 63/71 (88.73%), Postives = 64/71 (90.14%), Query Frame = 0

Query: 1   MASGKPR-------PFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT 60
           MASGKPR       PFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT
Sbjct: 144 MASGKPRPFPMPYLPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT 203

Query: 61  HELCIRKTSYS 65
           HELC+RKTSYS
Sbjct: 204 HELCVRKTSYS 214

BLAST of MELO3C032724 vs. ExPASy TrEMBL
Match: A0A5D3BM25 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1923G00020 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.4e-26
Identity = 57/64 (89.06%), Postives = 59/64 (92.19%), Query Frame = 0

Query: 1   MASGKPRPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPTHELCIRK 60
           MAS KP+PFPTHTYGVGKTYALGIPLISHVRLVP HYLR REYPLF DVLCPTHELC+ K
Sbjct: 174 MASEKPKPFPTHTYGVGKTYALGIPLISHVRLVPTHYLRRREYPLFSDVLCPTHELCVGK 233

Query: 61  TSYS 65
           TSYS
Sbjct: 234 TSYS 237

BLAST of MELO3C032724 vs. ExPASy TrEMBL
Match: A0A5A7TP57 (Global transcription factor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G001530 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.9e-23
Identity = 55/71 (77.46%), Postives = 57/71 (80.28%), Query Frame = 0

Query: 1   MASGKPRP-------FPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT 60
           MASGKPRP       FPTHTYGVGKTY LGIPLISHVRLVP HYLRH EYP FP+VLCPT
Sbjct: 156 MASGKPRPFPTLYLSFPTHTYGVGKTYVLGIPLISHVRLVPTHYLRHWEYPFFPNVLCPT 215

Query: 61  HELCIRKTSYS 65
           HEL + K SYS
Sbjct: 216 HELFVGKISYS 226

BLAST of MELO3C032724 vs. ExPASy TrEMBL
Match: A0A5D3CD66 (Global transcription factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00660 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.5e-18
Identity = 51/70 (72.86%), Postives = 53/70 (75.71%), Query Frame = 0

Query: 2   ASGKPR-------PFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPTH 61
           ASGKPR       PFPTHTY V KTYALGIPLISHVRLVP HYL  REYPLF DVL PT+
Sbjct: 59  ASGKPRSFPTHYLPFPTHTYDVKKTYALGIPLISHVRLVPTHYLWRREYPLFSDVLWPTY 118

Query: 62  ELCIRKTSYS 65
           +LC  KTS S
Sbjct: 119 KLCAGKTSDS 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK14842.11.3e-30100.00transcription factor GTE10 isoform X2 [Cucumis melo var. makuwa][more]
KAA0053449.12.0e-2888.73transcription factor GTE8-like isoform X3 [Cucumis melo var. makuwa][more]
TYK00324.17.1e-2689.06uncharacterized protein E5676_scaffold1923G00020 [Cucumis melo var. makuwa][more]
KAA0045152.11.6e-2277.46global transcription factor [Cucumis melo var. makuwa][more]
TYK08286.19.3e-1872.86global transcription factor [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CTR76.1e-31100.00Transcription factor GTE10 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7UJ179.7e-2988.73Transcription factor GTE8-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A5D3BM253.4e-2689.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TP577.9e-2377.46Global transcription factor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3CD664.5e-1872.86Global transcription factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032724.1MELO3C032724.1mRNA