MELO3C029379 (gene) Melon (DHL92) v4

Overview
NameMELO3C029379
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionIntegrase catalytic domain-containing protein
Locationchr05: 18850623 .. 18850907 (-)
RNA-Seq ExpressionMELO3C029379
SyntenyMELO3C029379
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAATCTAAATGTTGACGACTAGGTAAACGGTGGGGTGCAAACCGACGAAAATGACAGAGGACAGAGTTTTCGTGGATGGAGAAGACGAAATCTTGAAAGGCGACTTCATTGCGAGAGAAGGCTCAGCAGAAACACGACAGAGGATTTGATTTTCGCGAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTAGGGTGATGGCGAACAAGGAAGACGAAGAGGATTTGATTTTTGTGAACAAGGAGGACAAACAGAAGGTTCGTGCGAGAGATTTAG

mRNA sequence

ATGGTGAATCTAAATGTTGACGACTAGGTAAACGGTGGGGTGCAAACCGACGAAAATGACAGAGGACAGAGTTTTCGTGGATGGAGAAGACGAACAGAAACACGACAGAGGATTTGATTTTCGCGAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTAGGGTGATGGCGAACAAGGAGGACAAACAGAAGGTTCGTGCGAGAGATTTAG

Coding sequence (CDS)

ATGACAGAGGACAGAGTTTTCGTGGATGGAGAAGACGAACAGAAACACGACAGAGGATTTGATTTTCGCGAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTAGGGTGATGGCGAACAAGGAGGACAAACAGAAGGTTCGTGCGAGAGATTTA

Protein sequence

MTEDRVFVDGEDEQKHDRGFDFREQGGRREGSCERFRVMANKEDKQKVRARDL
Homology
[Close]
BLAST of MELO3C029379 vs. NCBI nr
Match: KAA0050651.1 (uncharacterized protein E6C27_scaffold673G001250 [Cucumis melo var. makuwa] >TYK07783.1 uncharacterized protein E5676_scaffold1737G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 3.6e-07
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 13 EQKHDRGFDFREQGGRREGSCERFRVMANKEDKQK 48
          +QKHDR FDF EQGGRREGSCERFRVMANKED++K
Sbjct: 12 QQKHDRRFDFHEQGGRREGSCERFRVMANKEDEEK 46

[Close]
BLAST of MELO3C029379 vs. ExPASy TrEMBL
Match: A0A5D3C784 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00660 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.7e-07
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 13 EQKHDRGFDFREQGGRREGSCERFRVMANKEDKQK 48
          +QKHDR FDF EQGGRREGSCERFRVMANKED++K
Sbjct: 12 QQKHDRRFDFHEQGGRREGSCERFRVMANKEDEEK 46

The following BLAST results are available for this feature:
BLAST of MELO3C029379 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0050651.13.6e-0785.71uncharacterized protein E6C27_scaffold673G001250 [Cucumis melo var. makuwa] >TYK... [more]
BLAST of MELO3C029379 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029379 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C7841.7e-0785.71Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MELO3C029379 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029379.1MELO3C029379.1mRNA