MELO3C029720 (gene) Melon (DHL92) v4

Overview


Name	MELO3C029720
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Auxin response factor
Location	chr02: 21969137 .. 21970283 (+)
RNA-Seq Expression	MELO3C029720
Synteny	MELO3C029720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGCTTAACCGTCATGTTTTCTTAGCTTTTTCCCTCTCTCTTTCTTTCTTTTGTGGCTTGTCCTTTGATTGATCGGTAGATGGGGTAGCAGTAGCACGATAGTTTACCATTCTTTCAGATTGTGAAAAACAGAGCAAGAGAGAAAGAGAAGAGAGACCCTTTTTCCCCTGTTCCTATTTTCTCCTCTTCTTCTTTGGTTTCTCTTGTTGTTCTTCAATCTTTGGCATTTTAGACTGAGACCCATTTTTTCAATTTGGATGACGCTTTACGAAGAGAATCTAGGGGAGTCTCGCAAAGGTGAAACCCAGTTAAATCTCTCTATTTTTTTCAAATTTGGTGTTTATCAAAACACCCAAAGGACTTTGAAATTTCGAGGTGTTTTTGGAGTGTTTGATTGATTTTGTTTGGTGGGTAGGTTTGGAAGGTGAGGATCTATATGAGGAGCTGTGGAAGGCATGTGCAGGACCTCTTGTTGAAGTTCCTATTGATGGAGAAAGGGTTTTTTACTTCCCGTAGAGTCATATGGAACAAGTATTTTGTCATCTCTTTTTCAATTTCACCCTTGAAACAAAAACCCCTCATAATCTTAGAGGCTGAAATTTCTTCTGCTTTTTGGTTCTTCATCAGTTGGAAGAGTCCACAAATCAGGAGCTTAATCACTAAATCCCTCATTTTGATCTCCCTCCCAAGATCCTATGTCGTGTTGTTAACATTCGTTTGCTGGTATTTCTTATTTTCTCTTTTGTTCATGTACACTTGCCTACTTTGTTTCTGTTGATTCTTCATGTTCGTTTTCTTCTTTTGCTTTCACTTTTGCAGGCTAAAAAGGAAACGGATGAAGTCTATGCTCAAATCACTTTATACCCAGAGGCTGATGTATGCATATATTTTTACTTCTTAGCGTTAATCCTTCCTTCTGTTCCTCTTCCTTCTTAGCCATCCATCCATCCATCCTCCAATCCCATTCTCTGAAACTTCCTAACACCTTACACTCCTCTTCTCTTCAATATATATATAAACTCAAACCAACCTCCTCCTTTTCCCAAATCAAGATCTCCAAGTTAAAGTGGGTGAGGGCTTCTATTTATTTATTTTTAGGTCACCCTTGATATATCCCATTCCATTGATATACAACTCATAAACTAG

mRNA sequence

CTTGCTTAACCGTCATGTTTTCTTAGCTTTTTCCCTCTCTCTTTCTTTCTTTTGTGGCTTGTCCTTTGATTGATCGGTAGATGGGGTAGCAGTAGCACGATAGTTTACCATTCTTTCAGATTGTGAAAAACAGAGCAAGAGAGAAAGAGAAGAGAGACCCTTTTTCCCCTGTTCCTATTTTCTCCTCTTCTTCTTTGGTTTCTCTTGTTGTTCTTCAATCTTTGGCATTTTAGACTGAGACCCATTTTTTCAATTTGGATGACGCTTTACGAAGAGAATCTAGGGGAGTCTCGCAAAGGTTTGGAAGGTGAGGATCTATATGAGGAGCTGTGGAAGGCATGTGCAGGACCTCTTGTTGAAGTTCCTATTGATGGAGAAAGGGCTAAAAAGGAAACGGATGAAGTCTATGCTCAAATCACTTTATACCCAGAGGCTGATGTCACCCTTGATATATCCCATTCCATTGATATACAACTCATAAACTAG

Coding sequence (CDS)

ATGACGCTTTACGAAGAGAATCTAGGGGAGTCTCGCAAAGGTTTGGAAGGTGAGGATCTATATGAGGAGCTGTGGAAGGCATGTGCAGGACCTCTTGTTGAAGTTCCTATTGATGGAGAAAGGGCTAAAAAGGAAACGGATGAAGTCTATGCTCAAATCACTTTATACCCAGAGGCTGATGTCACCCTTGATATATCCCATTCCATTGATATACAACTCATAAACTAG

Protein sequence

MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGERAKKETDEVYAQITLYPEADVTLDISHSIDIQLIN

Homology

[Close]

BLAST of MELO3C029720 vs. NCBI nr
Match: KAA0059740.1 (auxin response factor 11-like [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 2.2e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGERAKKETDEVYAQITLYPEAD 60
          MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGERAKKETDEVYAQITLYPEAD
Sbjct: 1  MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGERAKKETDEVYAQITLYPEAD 60

Query: 61 V 62
          V
Sbjct: 61 V 61

[Close]

BLAST of MELO3C029720 vs. NCBI nr
Match: TYK09454.1 (auxin response factor 18 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 2.9e-26
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGERAKKETDEVYAQITLYPEAD 60
          MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVP+DGERAKKETDEVYAQITLYPEAD
Sbjct: 1  MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPVDGERAKKETDEVYAQITLYPEAD 60

Query: 61 V 62
          V
Sbjct: 61 V 61

[Close]

BLAST of MELO3C029720 vs. NCBI nr
Match: KAA0067844.1 (auxin response factor 11-like [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 2.5e-14
Identity = 56/111 (50.45%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 1   MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGER------------------- 60
           MTLYEEN  ES +GLEGEDLYEEL KACAGPLVEV IDGER                   
Sbjct: 1   MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGERVFYFPQESTNQELIHQIPH 60

Query: 61  -----------------AKKETDEVYAQITLYPEADVTLDISHSIDIQLIN 76
                            A+KE DEVYAQITLYPEAD T  I   +D + +N
Sbjct: 61  FDLPPKILYHVVNICLLAEKEMDEVYAQITLYPEAD-TWMILFRMDAEAVN 110

[Close]

BLAST of MELO3C029720 vs. NCBI nr
Match: XP_038898458.1 (auxin response factor 18-like [Benincasa hispida])

HSP 1 Score: 88.2 bits (217), Expect = 3.3e-14
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1  MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGER 42
          MTLYE+NLGESRKGLEGEDLYEELWKACAGPLVEVP+DGER
Sbjct: 1  MTLYEQNLGESRKGLEGEDLYEELWKACAGPLVEVPVDGER 41

[Close]

BLAST of MELO3C029720 vs. NCBI nr
Match: KAA0050656.1 (auxin response factor 18 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 9.6e-14
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 1  MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGER 42
          MTLYEEN GESRKGLEGEDLYEELWKACAGPLVEVP+DGER
Sbjct: 1  MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGER 41

[Close]

BLAST of MELO3C029720 vs. ExPASy Swiss-Prot
Match: Q9ZPY6 (Auxin response factor 11 OS=Arabidopsis thaliana OX=3702 GN=ARF11 PE=2 SV=3)

HSP 1 Score: 53.1 bits (126), Expect = 1.5e-06
Identity = 35/91 (38.46%), Postives = 38/91 (41.76%), Query Frame = 0


Query: 14  GLEGEDLYEELWKACAGPLVEVPIDGER-------------------------------- 61
           G   ++LY ELWKACAGPLVEVP  GER                                
Sbjct: 33  GSNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPP 92

[Close]

BLAST of MELO3C029720 vs. ExPASy Swiss-Prot
Match: Q9C5W9 (Auxin response factor 18 OS=Arabidopsis thaliana OX=3702 GN=ARF18 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.9e-05
Identity = 34/100 (34.00%), Postives = 39/100 (39.00%), Query Frame = 0


Query: 5   EENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGER----------------------- 61
           +++ G S      + LY ELWK CAGPLVEVP   ER                       
Sbjct: 7   DDDFGSSSSRSYQDQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSE 66

[Close]

BLAST of MELO3C029720 vs. ExPASy Swiss-Prot
Match: Q9XED8 (Auxin response factor 9 OS=Arabidopsis thaliana OX=3702 GN=ARF9 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.4e-04
Identity = 31/85 (36.47%), Postives = 35/85 (41.18%), Query Frame = 0


Query: 17 GEDLYEELWKACAGPLVEVPIDGER----------------------------------- 58
          GE LY+ELWK CAGPLV+VP   ER                                   
Sbjct: 6  GEYLYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLPPKIL 65

[Close]

BLAST of MELO3C029720 vs. ExPASy Swiss-Prot
Match: K4DF01 (Auxin response factor 2B OS=Solanum lycopersicum OX=4081 GN=ARF2B PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.5e-04
Identity = 28/82 (34.15%), Postives = 34/82 (41.46%), Query Frame = 0


Query: 20  LYEELWKACAGPLVEVPIDGE--------------------------------------- 59
           LY ELW+ACAGPLV VP +GE                                       
Sbjct: 22  LYTELWRACAGPLVTVPCEGELVFYFPQGHIEQVEASTNQASDQQMPVYNLPSKILCRVI 81

[Close]

BLAST of MELO3C029720 vs. ExPASy Swiss-Prot
Match: Q8L7G0 (Auxin response factor 1 OS=Arabidopsis thaliana OX=3702 GN=ARF1 PE=1 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 2.5e-04
Identity = 33/102 (32.35%), Postives = 40/102 (39.22%), Query Frame = 0


Query: 14  GLEGEDLYEELWKACAGPLVEVPIDGE--------------------------------- 73
           G+  + L  ELW ACAGPLV +P +GE                                 
Sbjct: 13  GVLSDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSK 72

[Close]

BLAST of MELO3C029720 vs. ExPASy TrEMBL
Match: A0A5A7UX74 (Auxin response factor 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold551G00190 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGERAKKETDEVYAQITLYPEAD 60
          MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGERAKKETDEVYAQITLYPEAD
Sbjct: 1  MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGERAKKETDEVYAQITLYPEAD 60

Query: 61 V 62
          V
Sbjct: 61 V 61

[Close]

BLAST of MELO3C029720 vs. ExPASy TrEMBL
Match: A0A5D3CE34 (Auxin response factor 18 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00430 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGERAKKETDEVYAQITLYPEAD 60
          MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVP+DGERAKKETDEVYAQITLYPEAD
Sbjct: 1  MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPVDGERAKKETDEVYAQITLYPEAD 60

Query: 61 V 62
          V
Sbjct: 61 V 61

[Close]

BLAST of MELO3C029720 vs. ExPASy TrEMBL
Match: A0A5A7VKA5 (Auxin response factor 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00520 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 56/111 (50.45%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 1   MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGER------------------- 60
           MTLYEEN  ES +GLEGEDLYEEL KACAGPLVEV IDGER                   
Sbjct: 1   MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGERVFYFPQESTNQELIHQIPH 60

Query: 61  -----------------AKKETDEVYAQITLYPEADVTLDISHSIDIQLIN 76
                            A+KE DEVYAQITLYPEAD T  I   +D + +N
Sbjct: 61  FDLPPKILYHVVNICLLAEKEMDEVYAQITLYPEAD-TWMILFRMDAEAVN 110

[Close]

BLAST of MELO3C029720 vs. ExPASy TrEMBL
Match: A0A5D3C9C4 (Auxin response factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00590 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.6e-14
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 1  MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGER 42
          MTLYEEN GESRKGLEGEDLYEELWKACAGPLVEVP+DGER
Sbjct: 1  MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGER 41

[Close]

BLAST of MELO3C029720 vs. ExPASy TrEMBL
Match: A0A5A7U902 (Auxin response factor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001330 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.6e-14
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 1  MTLYEENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGER 42
          MTLYEEN GESRKGLEGEDLYEELWKACAGPLVEVP+DGER
Sbjct: 1  MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGER 41

[Close]

BLAST of MELO3C029720 vs. TAIR 10
Match: AT2G46530.1 (auxin response factor 11 )

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-07
Identity = 35/91 (38.46%), Postives = 38/91 (41.76%), Query Frame = 0


Query: 14  GLEGEDLYEELWKACAGPLVEVPIDGER-------------------------------- 61
           G   ++LY ELWKACAGPLVEVP  GER                                
Sbjct: 12  GSNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPP 71

[Close]

BLAST of MELO3C029720 vs. TAIR 10
Match: AT2G46530.3 (auxin response factor 11 )

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-07
Identity = 35/91 (38.46%), Postives = 38/91 (41.76%), Query Frame = 0


Query: 14  GLEGEDLYEELWKACAGPLVEVPIDGER-------------------------------- 61
           G   ++LY ELWKACAGPLVEVP  GER                                
Sbjct: 33  GSNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPP 92

[Close]

BLAST of MELO3C029720 vs. TAIR 10
Match: AT3G61830.1 (auxin response factor 18 )

HSP 1 Score: 48.9 bits (115), Expect = 2.1e-06
Identity = 34/100 (34.00%), Postives = 39/100 (39.00%), Query Frame = 0


Query: 5   EENLGESRKGLEGEDLYEELWKACAGPLVEVPIDGER----------------------- 61
           +++ G S      + LY ELWK CAGPLVEVP   ER                       
Sbjct: 7   DDDFGSSSSRSYQDQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSE 66

[Close]

BLAST of MELO3C029720 vs. TAIR 10
Match: AT4G23980.1 (auxin response factor 9 )

HSP 1 Score: 46.6 bits (109), Expect = 1.0e-05
Identity = 31/85 (36.47%), Postives = 35/85 (41.18%), Query Frame = 0


Query: 17 GEDLYEELWKACAGPLVEVPIDGER----------------------------------- 58
          GE LY+ELWK CAGPLV+VP   ER                                   
Sbjct: 6  GEYLYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLPPKIL 65

[Close]

BLAST of MELO3C029720 vs. TAIR 10
Match: AT4G23980.2 (auxin response factor 9 )

HSP 1 Score: 46.6 bits (109), Expect = 1.0e-05
Identity = 31/85 (36.47%), Postives = 35/85 (41.18%), Query Frame = 0


Query: 17 GEDLYEELWKACAGPLVEVPIDGER----------------------------------- 58
          GE LY+ELWK CAGPLV+VP   ER                                   
Sbjct: 6  GEYLYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLPPKIL 65

The following BLAST results are available for this feature:

BLAST of MELO3C029720 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059740.1	2.2e-26	100.00	auxin response factor 11-like [Cucumis melo var. makuwa]	[more]
TYK09454.1	2.9e-26	98.36	auxin response factor 18 isoform X2 [Cucumis melo var. makuwa]	[more]
KAA0067844.1	2.5e-14	50.45	auxin response factor 11-like [Cucumis melo var. makuwa]	[more]
XP_038898458.1	3.3e-14	95.12	auxin response factor 18-like [Benincasa hispida]	[more]
KAA0050656.1	9.6e-14	95.12	auxin response factor 18 isoform X2 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C029720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZPY6	1.5e-06	38.46	Auxin response factor 11 OS=Arabidopsis thaliana OX=3702 GN=ARF11 PE=2 SV=3	[more]
Q9C5W9	2.9e-05	34.00	Auxin response factor 18 OS=Arabidopsis thaliana OX=3702 GN=ARF18 PE=1 SV=1	[more]
Q9XED8	1.4e-04	36.47	Auxin response factor 9 OS=Arabidopsis thaliana OX=3702 GN=ARF9 PE=1 SV=1	[more]
K4DF01	2.5e-04	34.15	Auxin response factor 2B OS=Solanum lycopersicum OX=4081 GN=ARF2B PE=2 SV=1	[more]
Q8L7G0	2.5e-04	32.35	Auxin response factor 1 OS=Arabidopsis thaliana OX=3702 GN=ARF1 PE=1 SV=2	[more]

BLAST of MELO3C029720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UX74	1.1e-26	100.00	Auxin response factor 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3CE34	1.4e-26	98.36	Auxin response factor 18 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7VKA5	1.2e-14	50.45	Auxin response factor 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3C9C4	4.6e-14	95.12	Auxin response factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17...	[more]
A0A5A7U902	4.6e-14	95.12	Auxin response factor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]

BLAST of MELO3C029720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46530.1	1.1e-07	38.46	auxin response factor 11	[more]
AT2G46530.3	1.1e-07	38.46	auxin response factor 11	[more]
AT3G61830.1	2.1e-06	34.00	auxin response factor 18	[more]
AT4G23980.1	1.0e-05	36.47	auxin response factor 9	[more]
AT4G23980.2	1.0e-05	36.47	auxin response factor 9	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31384:SF8	AUXIN RESPONSE FACTOR 11	coord: 41..66
None	No IPR available	PANTHER	PTHR31384:SF8	AUXIN RESPONSE FACTOR 11	coord: 10..41
IPR044835	Auxin response factor	PANTHER	PTHR31384	AUXIN RESPONSE FACTOR 4-RELATED	coord: 10..41 coord: 41..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029720.1	MELO3C029720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009725	response to hormone
molecular_function	GO:0003677	DNA binding