MELO3C027819 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027819
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	S-protein homolog
Location	chr01: 5521752 .. 5522040 (-)
RNA-Seq Expression	MELO3C027819
Synteny	MELO3C027819

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTGGACAAGGCTACTCGTTCAAGTTCAGACCCAACCTCGTGGGAACGACATTGTTTTTCTGCAGCTTCACATGGACTGGACAACACCAATACATTGTTTTTCTGCAGCTTCACATGGACTGGACAACACCAAATCTACTGGTTCAATATCTTTGACGACAAAAGGGATGCAGGGAAATGCACCACATGCAGATGGATCATTCATGAATATAGCATGTGCTTGCAAGACCCGACAAACCCTGGCAAAGATATATGCTATAACTACGGAGATAAGGAGCCAAGCATTGT

mRNA sequence

GCTTGGACAAGGCTACTCGTTCAAGTTCAGACCCAACCTCGTGGGAACGACATTGTTTTTCTGCAGCTTCACATGGACTGGACAACACCAAATCTACTGGTTCAATATCTTTGACGACAAAAGGGATGCAGGGAAATGCACCACATGCAGATGGATCATTCATGAATATAGCATGTGCTTGCAAGACCCGACAAACCCTGGCAAAGATATATGCTATAACTACGGAGATAAGGAGCCAAGCATTGT

Coding sequence (CDS)

CTTGGACAAGGCTACTCGTTCAAGTTCAGACCCAACCTCGTGGGAACGACATTGTTTTTCTGCAGCTTCACATGGACTGGACAACACCAAATCTACTGGTTCAATATCTTTGACGACAAAAGGGATGCAGGGAAATGCACCACATGCAGATGGATCATTCATGAATATAGCATGTGCTTGCAAGACCCGACAAACCCTGGCAAAGATATATGCTATAACTACGGAGATAAGGAGCCAAGCATT

Protein sequence

LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCLQDPTNPGKDICYNYGDKEPSI

Homology

[Close]

BLAST of MELO3C027819 vs. NCBI nr
Match: TYK14097.1 (self-incompatibility protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 191.4 bits (485), Expect = 3.0e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1   LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL 60
           LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL
Sbjct: 64  LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL 123

Query: 61  QDPTNPGKDICYNYGDKEPSI 82
           QDPTNPGKDICYNYGDKEPSI
Sbjct: 124 QDPTNPGKDICYNYGDKEPSI 144

[Close]

BLAST of MELO3C027819 vs. NCBI nr
Match: KAA0059510.1 (self-incompatibility protein 1 [Cucumis melo var. makuwa] >KAA0059511.1 self-incompatibility protein 1 [Cucumis melo var. makuwa] >TYK14096.1 self-incompatibility protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 189.9 bits (481), Expect = 8.7e-45
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1   LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL 60
           LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRD GKCTTCRWIIHEYSMCL
Sbjct: 64  LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDVGKCTTCRWIIHEYSMCL 123

Query: 61  QDPTNPGKDICYNYGDKEPSI 82
           QDPTNPGKDICYNYGDKEPSI
Sbjct: 124 QDPTNPGKDICYNYGDKEPSI 144

[Close]

BLAST of MELO3C027819 vs. NCBI nr
Match: KAA0050672.1 (self-incompatibility protein 1 [Cucumis melo var. makuwa] >TYK07760.1 self-incompatibility protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 189.9 bits (481), Expect = 8.7e-45
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1   LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL 60
           LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL
Sbjct: 64  LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL 123

Query: 61  QDPTNPGKDICYNYGDKEPSI 82
           +DPTNPGKDICYNYGDKEPSI
Sbjct: 124 RDPTNPGKDICYNYGDKEPSI 144

[Close]

BLAST of MELO3C027819 vs. NCBI nr
Match: KAA0063208.1 (self-incompatibility protein 1 [Cucumis melo var. makuwa] >TYK13715.1 self-incompatibility protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 189.1 bits (479), Expect = 1.5e-44
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1   LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL 60
           LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL
Sbjct: 64  LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL 123

Query: 61  QDPTNPGKDICYNYGDKEPSI 82
           QDP NPGKDICYNYGDKEPSI
Sbjct: 124 QDPKNPGKDICYNYGDKEPSI 144

[Close]

BLAST of MELO3C027819 vs. NCBI nr
Match: KAA0050677.1 (self-incompatibility protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 189.1 bits (479), Expect = 1.5e-44
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1   LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL 60
           LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIH YSMCL
Sbjct: 64  LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHAYSMCL 123

Query: 61  QDPTNPGKDICYNYGDKEPSI 82
           QDPTNPGKDICYNYGDKEPSI
Sbjct: 124 QDPTNPGKDICYNYGDKEPSI 144

[Close]

BLAST of MELO3C027819 vs. ExPASy Swiss-Prot
Match: Q9FMQ4 (S-protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=SPH3 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-10
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 5   YSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGK----CTTCRWIIHEYSMCL 64
           +SFKFR ++VGTTLF+C FTW GQ +   F+I+DD RD  +    C  C W I     C+
Sbjct: 73  WSFKFRTSIVGTTLFYCHFTWPGQSK--RFDIYDDDRDGVRSHISCINCIWDISIQGPCM 132

Query: 65  QDPTNPGKDICYNY 75
              ++   +ICY++
Sbjct: 133 FSESDHAFNICYDW 144

[Close]

BLAST of MELO3C027819 vs. ExPASy Swiss-Prot
Match: O23020 (S-protein homolog 5 OS=Arabidopsis thaliana OX=3702 GN=SPH5 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-09
Identity = 28/57 (49.12%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 3   QGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMC 60
           Q Y FKF+PNL  +TLFFCSF W  Q +   F+I+D +RD G C  C+W I     C
Sbjct: 62  QEYHFKFQPNLWKSTLFFCSFQWDSQFKS--FDIYDAQRDQGICDDCQWEIKPDGPC 116

[Close]

BLAST of MELO3C027819 vs. ExPASy Swiss-Prot
Match: F4JLQ5 (S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-06
Identity = 27/76 (35.53%), Postives = 40/76 (52.63%), Query Frame = 0


Query: 2   GQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAG---KCTT--CRWIIHEY 61
           G+ +SF F     G TL+FCSF+W   ++ + F+I+ D RD+G   KC +  C W I   
Sbjct: 81  GESWSFSFGRQFFGRTLYFCSFSW--PNESHSFDIYKDHRDSGGDNKCESDRCVWKIRRN 140

Query: 62  SMCLQDPTNPGKDICY 73
             C  +      D+CY
Sbjct: 141 GPCRFNDETKQFDLCY 154

[Close]

BLAST of MELO3C027819 vs. ExPASy TrEMBL
Match: A0A5D3CQA2 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1193G00110 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.4e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1   LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL 60
           LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL
Sbjct: 64  LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL 123

Query: 61  QDPTNPGKDICYNYGDKEPSI 82
           QDPTNPGKDICYNYGDKEPSI
Sbjct: 124 QDPTNPGKDICYNYGDKEPSI 144

[Close]

BLAST of MELO3C027819 vs. ExPASy TrEMBL
Match: A0A5D3CUL8 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1193G00100 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 4.2e-45
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1   LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL 60
           LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRD GKCTTCRWIIHEYSMCL
Sbjct: 64  LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDVGKCTTCRWIIHEYSMCL 123

Query: 61  QDPTNPGKDICYNYGDKEPSI 82
           QDPTNPGKDICYNYGDKEPSI
Sbjct: 124 QDPTNPGKDICYNYGDKEPSI 144

[Close]

BLAST of MELO3C027819 vs. ExPASy TrEMBL
Match: A0A5A7U4C4 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00340 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 4.2e-45
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1   LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL 60
           LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL
Sbjct: 64  LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL 123

Query: 61  QDPTNPGKDICYNYGDKEPSI 82
           +DPTNPGKDICYNYGDKEPSI
Sbjct: 124 RDPTNPGKDICYNYGDKEPSI 144

[Close]

BLAST of MELO3C027819 vs. ExPASy TrEMBL
Match: A0A5D3CQ97 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002410 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 7.2e-45
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1   LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL 60
           LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL
Sbjct: 64  LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL 123

Query: 61  QDPTNPGKDICYNYGDKEPSI 82
           QDP NPGKDICYNYGDKEPSI
Sbjct: 124 QDPKNPGKDICYNYGDKEPSI 144

[Close]

BLAST of MELO3C027819 vs. ExPASy TrEMBL
Match: A0A5A7V885 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G00150 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 7.2e-45
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1   LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL 60
           LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL
Sbjct: 177 LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMCL 236

Query: 61  QDPTNPGKDICYNYGDKEPSI 82
           QDP NPGKDICYNYGDKEPSI
Sbjct: 237 QDPKNPGKDICYNYGDKEPSI 257

[Close]

BLAST of MELO3C027819 vs. TAIR 10
Match: AT5G12060.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-11
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 5   YSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGK----CTTCRWIIHEYSMCL 64
           +SFKFR ++VGTTLF+C FTW GQ +   F+I+DD RD  +    C  C W I     C+
Sbjct: 73  WSFKFRTSIVGTTLFYCHFTWPGQSK--RFDIYDDDRDGVRSHISCINCIWDISIQGPCM 132

Query: 65  QDPTNPGKDICYNY 75
              ++   +ICY++
Sbjct: 133 FSESDHAFNICYDW 144

[Close]

BLAST of MELO3C027819 vs. TAIR 10
Match: AT1G04645.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 62.0 bits (149), Expect = 2.5e-10
Identity = 28/57 (49.12%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 3   QGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYSMC 60
           Q Y FKF+PNL  +TLFFCSF W  Q +   F+I+D +RD G C  C+W I     C
Sbjct: 62  QEYHFKFQPNLWKSTLFFCSFQWDSQFKS--FDIYDAQRDQGICDDCQWEIKPDGPC 116

[Close]

BLAST of MELO3C027819 vs. TAIR 10
Match: AT3G16970.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 57.0 bits (136), Expect = 8.2e-09
Identity = 25/71 (35.21%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 5   YSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAG----KCTTCRWIIHEYSMCL 64
           +SF+FRP++ G TLFFC F W    +++WF+I+   RD       C  C W I +   C 
Sbjct: 64  WSFEFRPSVFGGTLFFCGFIW--DKELHWFDIYKQSRDREFAEFGCRRCEWKIRKDGPCK 123

Query: 65  QDPTNPGKDIC 72
            +  +   D+C
Sbjct: 124 LNKNSNMFDVC 132

[Close]

BLAST of MELO3C027819 vs. TAIR 10
Match: AT4G16195.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 53.5 bits (127), Expect = 9.0e-08
Identity = 27/76 (35.53%), Postives = 40/76 (52.63%), Query Frame = 0


Query: 2   GQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAG---KCTT--CRWIIHEY 61
           G+ +SF F     G TL+FCSF+W   ++ + F+I+ D RD+G   KC +  C W I   
Sbjct: 81  GESWSFSFGRQFFGRTLYFCSFSW--PNESHSFDIYKDHRDSGGDNKCESDRCVWKIRRN 140

Query: 62  SMCLQDPTNPGKDICY 73
             C  +      D+CY
Sbjct: 141 GPCRFNDETKQFDLCY 154

[Close]

BLAST of MELO3C027819 vs. TAIR 10
Match: AT1G26799.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-07
Identity = 28/80 (35.00%), Postives = 41/80 (51.25%), Query Frame = 0


Query: 1   LGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRD------AGKCTTCRWIIH 60
           +G  + F+FR NL  TT + C+F W G   I  F+IF   RD       G C  C W I+
Sbjct: 73  IGASFDFRFRVNLRKTTTYNCTFEWPG--SIEKFDIFRADRDDNETSPIGICRECIWYIY 132

Query: 61  EYSMCLQDPTNPGKDICYNY 75
           E + C ++  + G  IC+ +
Sbjct: 133 EPAPC-REKRDGGHSICFTW 149

The following BLAST results are available for this feature:

BLAST of MELO3C027819 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK14097.1	3.0e-45	100.00	self-incompatibility protein 1 [Cucumis melo var. makuwa]	[more]
KAA0059510.1	8.7e-45	98.77	self-incompatibility protein 1 [Cucumis melo var. makuwa] >KAA0059511.1 self-inc...	[more]
KAA0050672.1	8.7e-45	98.77	self-incompatibility protein 1 [Cucumis melo var. makuwa] >TYK07760.1 self-incom...	[more]
KAA0063208.1	1.5e-44	98.77	self-incompatibility protein 1 [Cucumis melo var. makuwa] >TYK13715.1 self-incom...	[more]
KAA0050677.1	1.5e-44	98.77	self-incompatibility protein 1 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C027819 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMQ4	1.5e-10	41.89	S-protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=SPH3 PE=2 SV=1	[more]
O23020	3.6e-09	49.12	S-protein homolog 5 OS=Arabidopsis thaliana OX=3702 GN=SPH5 PE=2 SV=1	[more]
F4JLQ5	1.3e-06	35.53	S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1	[more]

BLAST of MELO3C027819 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CQA2	1.4e-45	100.00	S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1193G0...	[more]
A0A5D3CUL8	4.2e-45	98.77	S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1193G0...	[more]
A0A5A7U4C4	4.2e-45	98.77	S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G0...	[more]
A0A5D3CQ97	7.2e-45	98.77	S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00...	[more]
A0A5A7V885	7.2e-45	98.77	S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G00...	[more]

BLAST of MELO3C027819 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12060.1	1.0e-11	41.89	Plant self-incompatibility protein S1 family	[more]
AT1G04645.1	2.5e-10	49.12	Plant self-incompatibility protein S1 family	[more]
AT3G16970.1	8.2e-09	35.21	Plant self-incompatibility protein S1 family	[more]
AT4G16195.1	9.0e-08	35.53	Plant self-incompatibility protein S1 family	[more]
AT1G26799.1	2.6e-07	35.00	Plant self-incompatibility protein S1 family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 2..73 e-value: 2.8E-15 score: 56.7
IPR010264	Plant self-incompatibility S1	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 2..71
None	No IPR available	PANTHER	PTHR31232:SF43	S-PROTEIN HOMOLOG 18-RELATED	coord: 2..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027819.1	MELO3C027819.1	mRNA