Spg037461 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg037461
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein SIEL
Location	scaffold11: 31426763 .. 31429712 (-)
RNA-Seq Expression	Spg037461
Synteny	Spg037461

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGTGCTTACTGCTTACCGCCGCCATCGATGCTCGCCTGTAGCCTCTCCTAGTCTCCTCTTGTGCTCGTGCTTACCACCGCTGTGGGTACTTGCCGTTCTTGTTCTTGTCGGAGTTTAAGTTGCCGTCGGGTAAGTTTGCCTCTCTGATTTTTTTCATTCTTTTCATTCTCGTCGAGTTTAAGTCGCCACCGTCGGGTATTTCTTTTTTTGGTCGGGTTTTCTGGGCTCTGTTCTGGAGTGTGGATTAGGGTTGTCGTTCTATGTTCTGGAGTGTGGATTAAAGTTTTCTGGATTTATTTGGTAATGGGTGAAAGTCTGGATTCTGGGTTTATTTTTTTTGTGTGTTTTTTTTTATGTATGTGTGTTCATTGGTTTTCTATTTTGCGTTTGGGTTTTTGTTGTGATGTTTATGGTGTTTGTTTCAGTGGTTCTTGGTTCCAGGATGTTGTTTATGGTGTTTGTTTCGGTGGTTCTATTTCATGAATTTGGTTTTTATATTGAATGGTTAAGGATTATGTTGTGTGATTTGGTTAAGAATTTGGTTTTTCTGGGTTTATTTGGTATGGTTAAGAATTTGGTTAAGAATGGTTAAGGATTATGTTGTGTATAAGTTTTGCTAGTTCTTTGAAGCATCATTCCTTTGAAATAACTCGGTAACTGAGGAAGGAGGCAACGTCATACCTAAGGAATCAAAAGAACATTGGTAAGATTCCTTAATTCAATGGCAAAAATCATGAAGTTTTAACCAAAACAGATCATGCCAGTAACAGAGCTTGCTGAAAGCAGAATAATTTGCTTCTTATAGCATCAATGGCTTTTCTGTAAACCATTAAGTTGATACTTGAAGAGACAGACCTTTAATAAAATCTTCTAATAAGAGATAATATATATGATAGGTCCATAATCTATGCCATATACCATATATCAACTAAAGTAGTAGATACATCTCAATGACGATACTGATTGAAAATAGAGCAAGATAACTAAACATAAACATTATGGGTTAGTTGAAGCAGGAAATAAGCCGAAAACACTTGTACCTAAGTTACCATTTAAATATCATTGCAGTCAAATTTCAACTATCTTTTCAACTTTGTTTCTAACTCTGGAGCTACATAACCTACATCCTGAATGACATCAAGTAATAAATGTCAGGGAAGTTAGCATTCCTTATACGTAGAATTGTCTTCCACTAGTTTTTCCAAGGGTGAAATGAAAACAAGCTCAAGGCACTTGTATAATGCTAGGATTATGGGTAGCTAAACTCGAGGCACTACATCTCACTAGGGACTTATCATCTACCTGATGTATTCTAATGGATTCAAGATGTCAATTACAGTTTATATTCTAATGGACTTATCATCAAATAGACTTATCCTCCTTCCTCCTTCCTCATTTTTCAATATGACTAATTATTCCAACAAAAAAGAAAGGATAAAAAGAAGACTAATTATTATAAATCTGTTGGTTGCTACTCAGTTGCTTTCATTTGCTCTCTTTTGGTCCTTTTACTTTGATTTTTTTTTGATTTGTTCCCTAACCTTTCATAATTTGGTCCTCGTTTGATAAGCATTGATAAACATTTGGTCCTCGTTTGATAACCATATGGTTTTTTAGATTATTTGGTCCTCGTCTAATGGAATAACTACTACAATGTATAATGTAAAATTCTCCATCTATATCATTTCAGCCAAATTTATGAACAATGGGTTGTTTAACTTTGAGTTATGTGAGTTGTTTTTGGTGAGTGAGTTTATTGGTTGGTAAGAGTTGTTTAGAGTATAAAAAGGAAGTTTCAATTAATCTAGGTTTATGTAGGTTTTAAGATTTGTAAATTTCTAGTTTGGGAATCAAGCAAGCAACAATTACGATGATTTGGGCATTTGTTTGACTCGAATGTTTGTCTTAAACATCTGTGTGTTGGTATATATAGTGTTACCACATGCTGTTCATATGAAGCATACTCTCAATTGATCTATTATTCACATATAGATGATTATTATTGGTTTACTGACTTTTCTGTCCCACCGAACAAGTTTTTGGTCTTTTACATACTCTCATATTGCATCTTTCCTCTTTTTCACTAATGATCTTCTGTATTAGGAAAGTTAACTTGTGAAGGTCAATGGATTATGATGGTTCTGTTAACTCTCTTGAACTTGTCCTTTGCTTCAGATAGACCCAACATCTGAAGGCAAACTTGGATTTGATAATGTGAAGGTGCTTGCATACATTGTTCTCGCTATTTTAGCTCCTGTTTTGGCCACTAACATAATCAGGATTTTTGCATGAAGTTTTAAGGACTTTGAGGTTTGTAAATCAGTTTTTTCTTTAACTACTTTTGAGGCTATACATTAAATGAATTGTTCTTTATCTATGGAAATAGTATGAAGTTTTTCTTAGTACAAGATTAGTTGTCTGTTCTGTTAAAGAAAAACATTCTTTAAAAAAAATATATAAAATAATGTGATTCCCCTGAAATTTTTGAGTATGCAACTATTGTAGCAAAAAGGTTCAAAATGTTTGTCTGAGAGTTCAAATAAATCCAAAACTGTTGACAGAATATGATTATAAGGCAAGCCCATCATACTTCTAGACCAAAGTTTGGTGACATTCTGCACTTTAGGTTCATTTGCAAGTTGTTCTCTTATGGTTAACTAACAGAACTGGCCCTCTACTGCATTTGAATTTCATGGAATTGTCTAACGCTTCGTGTGCTTCTTGTTACAGCCTAGAAAAGCACAAGACAAATAGTAACATTTTGCCACAATTAAGCAATTGATCAAATTACTGATGGATTTGAAAGAGAGGAAGTGCACACTGTCCTCACAACAATAGAATCAATTTCTGTGTAGTAGAAGAGCTGATTCTGGATGTTTTTGCATTCTAAATTTCTTAGGAATGTAATGTTTGCTAGTCTTCTTGTCTTCTTTGATGTGAAAGAA

mRNA sequence

ATGCTCGTGCTTACTGCTTACCGCCGCCATCGATGCTCGCCTGTAGCCTCTCCTAGTCTCCTCTTGTGCTCGTGCTTACCACCGCTGTGGGTACTTGCCGTTCTTGTTCTTATAGACCCAACATCTGAAGGCAAACTTGGATTTGATAATGTGAAGGTGCTTGCATACATTGTTCTCGCTATTTTAGCTCCTGTTTTGGCCACTAACATAATCAGGATTTTTGCATGA

Coding sequence (CDS)

ATGCTCGTGCTTACTGCTTACCGCCGCCATCGATGCTCGCCTGTAGCCTCTCCTAGTCTCCTCTTGTGCTCGTGCTTACCACCGCTGTGGGTACTTGCCGTTCTTGTTCTTATAGACCCAACATCTGAAGGCAAACTTGGATTTGATAATGTGAAGGTGCTTGCATACATTGTTCTCGCTATTTTAGCTCCTGTTTTGGCCACTAACATAATCAGGATTTTTGCATGA

Protein sequence

MLVLTAYRRHRCSPVASPSLLLCSCLPPLWVLAVLVLIDPTSEGKLGFDNVKVLAYIVLAILAPVLATNIIRIFA

Homology

[Close]

BLAST of Spg037461 vs. NCBI nr
Match: XP_022982770.1 (protein SIEL [Cucurbita maxima] >XP_022982771.1 protein SIEL [Cucurbita maxima])

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-04
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 38  IDPTSEGKLGFDNVKVLAYIVLAILAPVLATNIIRI 74
           IDP SEGKLGFD+VKV+AYIVLAI APVL T+ +RI
Sbjct: 357 IDPASEGKLGFDSVKVMAYIVLAISAPVLDTHSLRI 392

[Close]

BLAST of Spg037461 vs. NCBI nr
Match: KAG7017202.1 (Protein SIEL [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-04
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 38  IDPTSEGKLGFDNVKVLAYIVLAILAPVLATNIIRI 74
           IDP SEGKLGFD+VKV+AYIVLAI APVL T+ +RI
Sbjct: 357 IDPASEGKLGFDSVKVIAYIVLAISAPVLDTHSLRI 392

[Close]

BLAST of Spg037461 vs. NCBI nr
Match: KAG6580448.1 (Protein SIEL, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-04
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 38  IDPTSEGKLGFDNVKVLAYIVLAILAPVLATNIIRI 74
           IDP SEGKLGFD+VKV+AYIVLAI APVL T+ +RI
Sbjct: 213 IDPASEGKLGFDSVKVIAYIVLAISAPVLDTHSLRI 248

[Close]

BLAST of Spg037461 vs. NCBI nr
Match: XP_022934308.1 (protein SIEL [Cucurbita moschata] >XP_022934309.1 protein SIEL [Cucurbita moschata])

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-04
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 38  IDPTSEGKLGFDNVKVLAYIVLAILAPVLATNIIRI 74
           IDP SEGKLGFD+VKV+AYIVLAI APVL T+ +RI
Sbjct: 357 IDPASEGKLGFDSVKVIAYIVLAISAPVLDTHSLRI 392

[Close]

BLAST of Spg037461 vs. ExPASy TrEMBL
Match: A0A6J1J0A1 (protein SIEL OS=Cucurbita maxima OX=3661 GN=LOC111481532 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.0e-04
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 38  IDPTSEGKLGFDNVKVLAYIVLAILAPVLATNIIRI 74
           IDP SEGKLGFD+VKV+AYIVLAI APVL T+ +RI
Sbjct: 357 IDPASEGKLGFDSVKVMAYIVLAISAPVLDTHSLRI 392

[Close]

BLAST of Spg037461 vs. ExPASy TrEMBL
Match: A0A6J1F7A9 (protein SIEL OS=Cucurbita moschata OX=3662 GN=LOC111441512 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.0e-04
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 38  IDPTSEGKLGFDNVKVLAYIVLAILAPVLATNIIRI 74
           IDP SEGKLGFD+VKV+AYIVLAI APVL T+ +RI
Sbjct: 357 IDPASEGKLGFDSVKVIAYIVLAISAPVLDTHSLRI 392

The following BLAST results are available for this feature:

BLAST of Spg037461 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022982770.1	4.0e-04	77.78	protein SIEL [Cucurbita maxima] >XP_022982771.1 protein SIEL [Cucurbita maxima]	[more]
KAG7017202.1	4.0e-04	77.78	Protein SIEL [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6580448.1	4.0e-04	77.78	Protein SIEL, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022934308.1	4.0e-04	77.78	protein SIEL [Cucurbita moschata] >XP_022934309.1 protein SIEL [Cucurbita moscha...	[more]

BLAST of Spg037461 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg037461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J0A1	2.0e-04	77.78	protein SIEL OS=Cucurbita maxima OX=3661 GN=LOC111481532 PE=4 SV=1	[more]
A0A6J1F7A9	2.0e-04	77.78	protein SIEL OS=Cucurbita moschata OX=3662 GN=LOC111441512 PE=4 SV=1	[more]

BLAST of Spg037461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg037461.1	Spg037461.1	mRNA