Spg036311 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg036311
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	NADH-ubiquinone reductase complex 1 MLRQ subunit
Location	scaffold5: 45481902 .. 45483368 (-)
RNA-Seq Expression	Spg036311
Synteny	Spg036311

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCCCCTTCCCCCACAACTCTCCGATTCAGTCGCGTCTCAGTCTCCTCGATCCGCTTCCTCCGCCGAAATTCATCGATGGCTCCTTCCACCATTAGTCGATGGCTGAGGCCTGAGGTATCACGCAGATCTGCCGTTTAATTAATCTTCTGATCCTCTTTCTTAATTGATTGATGTCCGTTTCCATGCCGTCTAACAATCTGAATTCGTTTTAGGTTTACCCGCTATTCGCGGCGGTAGGAGTGGCCGTCGGAATCTGTGGATTTCAGTTAGTCCGTAACATCTGCATCAATCCTGAAGTCAGGTCTCTCCGAGTTTTCTCTATCTCTAACTTTCCTTTTGTGTTTTAACTTTGATATTATTTTGTGGTTTAATTTGGATATTCTCATGGTATATGACGATACTGGATTTGAAGATGAATAATAATAAGTTTTGAGCTTAAACCTACCTTTGGCCCTTTGCTATCGCTGCGATTTGTTCGAATAGGATGCGTGTGCGGAATTTTTCAGATTATGATGCATGTAGAATAATGTATAATCTAGTACAGAAACGAATTTAACGTGTTGAAAGAGGATTGTTTTTTGCATTTGTTGTTGATTGCTGCGGCTTAAATGTAAAGGAATATTAGGCTTTTCTTTTAGCAGTTATCTGCGACATAGATAGTAGACCTGACCCAGATGATATGTCCAGGTGTAAATTGTTATGCAATTAGTTTCAATTCCCTAACGAGATAAACTGAAACTGACAAGATTTGCAAATTGAATTTAACAAGAAATTCGAAGTGATCAGTCTTTCCCCTATACTTGTTTGTTTGTTTGAATATTTCATGGGTTCTATCTGTATACCCTTGTGAAGAAGGCCAATGGGGTGTAAATACAATTTCTCTATATGTTGAAGTATGGCTTCATCGAAATAGATTGTTTTCTGTTCTTAATTAAGAGTTTTATAACCTCGTTAGTACATTGTTTGTGATCCTATGAAAATCAGAGTGAGCAAGGAGAATAGAGCCGCTGGAGTCCTAGATAACTTTGCTGAGGGAGAGAAGTATGCCGAGCATTTCCTGAGGAAATTCGTCCGCAACAAGTCCCCAGAAATTATGCCATCGATCAACAACTTCTTCACCGACCCAAGTCGAAACTAAGATGCTATTTGAATGAACTACACATTAGTTTGGATATAGATTCAAATTTCGATTGTTGGTGCTGGTGGGTTGGTGGCTGTAAACTATGCTGCTGTTACGTTTGCTTTTATTTTTGATCTGAGAAAGTTTGAAAACAATGGTTTGCTGAAATAAACTGTACTGAACGCAAATTTGATTTCAGTTATTGTGGAATTCTGATGCTGGTCAAGCACTTCCAATGATTTATGTTGATGGATATGTGAATTAACTGATTTTCTCTTGGTTGAAAGTGTATACTTTAACCAATTAAACTTACTCATTGACAATTTATCTCGGTTAACTCCTCAT

mRNA sequence

ATGGCTCCTTCCACCATTAGTCGATGGCTGAGGCCTGAGGTTTACCCGCTATTCGCGGCGGTAGGAGTGGCCGTCGGAATCTGTGGATTTCAGTTAGTCCGTAACATCTGCATCAATCCTGAAGTCAGAGTGAGCAAGGAGAATAGAGCCGCTGGAGTCCTAGATAACTTTGCTGAGGGAGAGAAGTATGCCGAGCATTTCCTGAGGAAATTCGTCCGCAACAAGTCCCCAGAAATTATGCCATCGATCAACAACTTCTTCACCGACCCAAGTCGAAACTAA

Coding sequence (CDS)

ATGGCTCCTTCCACCATTAGTCGATGGCTGAGGCCTGAGGTTTACCCGCTATTCGCGGCGGTAGGAGTGGCCGTCGGAATCTGTGGATTTCAGTTAGTCCGTAACATCTGCATCAATCCTGAAGTCAGAGTGAGCAAGGAGAATAGAGCCGCTGGAGTCCTAGATAACTTTGCTGAGGGAGAGAAGTATGCCGAGCATTTCCTGAGGAAATTCGTCCGCAACAAGTCCCCAGAAATTATGCCATCGATCAACAACTTCTTCACCGACCCAAGTCGAAACTAA

Protein sequence

MAPSTISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN

Homology

[Close]

BLAST of Spg036311 vs. NCBI nr
Match: XP_022137737.1 (uncharacterized protein LOC111009092 [Momordica charantia])

HSP 1 Score: 191.8 bits (486), Expect = 2.6e-45
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MAPSTISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRAAGVLDNFAEG 60
          MAPST+SRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENR+AGVLDNFAEG
Sbjct: 1  MAPSTVSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRSAGVLDNFAEG 60

Query: 61 EKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94
          EKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 EKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 93

[Close]

BLAST of Spg036311 vs. NCBI nr
Match: XP_022924187.1 (uncharacterized protein LOC111431708 [Cucurbita moschata] >XP_023519445.1 uncharacterized protein LOC111782858 [Cucurbita pepo subsp. pepo] >KAG6584243.1 hypothetical protein SDJN03_20175, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019839.1 hypothetical protein SDJN02_18803, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189.1 bits (479), Expect = 1.7e-44
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MAPSTISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRAAGVLDNFAEG 60
          MAPST++RWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRV+KENRAAGVLDNFAEG
Sbjct: 1  MAPSTVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAEG 60

Query: 61 EKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94
          EKY EHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 93

[Close]

BLAST of Spg036311 vs. NCBI nr
Match: XP_023000853.1 (uncharacterized protein LOC111495175 [Cucurbita maxima])

HSP 1 Score: 186.8 bits (473), Expect = 8.4e-44
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MAPSTISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRAAGVLDNFAEG 60
          MAPST++RWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRV+KENRAAGVLDNF EG
Sbjct: 1  MAPSTVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFDEG 60

Query: 61 EKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94
          EKY EHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 93

[Close]

BLAST of Spg036311 vs. NCBI nr
Match: XP_038893556.1 (uncharacterized protein LOC120082448 [Benincasa hispida])

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MAPST-ISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRAAGVLDNFAE 60
          MAPS+ +SRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRAAGVLDNFAE
Sbjct: 1  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRAAGVLDNFAE 60

Query: 61 GEKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94
          GEKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 GEKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94

[Close]

BLAST of Spg036311 vs. NCBI nr
Match: XP_008437938.1 (PREDICTED: uncharacterized protein LOC103483212 [Cucumis melo] >KAA0055200.1 uncharacterized protein E6C27_scaffold80G00410 [Cucumis melo var. makuwa] >TYJ99130.1 uncharacterized protein E5676_scaffold248G003360 [Cucumis melo var. makuwa])

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 90/94 (95.74%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MAP-STISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRAAGVLDNFAE 60
          MAP ST+SRWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEVRVSKENRAAGVLDNFAE
Sbjct: 1  MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE 60

Query: 61 GEKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94
          GEKY+EHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94

[Close]

BLAST of Spg036311 vs. ExPASy TrEMBL
Match: A0A6J1C941 (uncharacterized protein LOC111009092 OS=Momordica charantia OX=3673 GN=LOC111009092 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.3e-45
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MAPSTISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRAAGVLDNFAEG 60
          MAPST+SRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENR+AGVLDNFAEG
Sbjct: 1  MAPSTVSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRSAGVLDNFAEG 60

Query: 61 EKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94
          EKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 EKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 93

[Close]

BLAST of Spg036311 vs. ExPASy TrEMBL
Match: A0A6J1E888 (uncharacterized protein LOC111431708 OS=Cucurbita moschata OX=3662 GN=LOC111431708 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 8.2e-45
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MAPSTISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRAAGVLDNFAEG 60
          MAPST++RWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRV+KENRAAGVLDNFAEG
Sbjct: 1  MAPSTVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAEG 60

Query: 61 EKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94
          EKY EHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 93

[Close]

BLAST of Spg036311 vs. ExPASy TrEMBL
Match: A0A6J1KNV1 (uncharacterized protein LOC111495175 OS=Cucurbita maxima OX=3661 GN=LOC111495175 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.1e-44
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MAPSTISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRAAGVLDNFAEG 60
          MAPST++RWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRV+KENRAAGVLDNF EG
Sbjct: 1  MAPSTVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFDEG 60

Query: 61 EKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94
          EKY EHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 EKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 93

[Close]

BLAST of Spg036311 vs. ExPASy TrEMBL
Match: A0A5A7UIX5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003360 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.3e-44
Identity = 90/94 (95.74%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MAP-STISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRAAGVLDNFAE 60
          MAP ST+SRWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEVRVSKENRAAGVLDNFAE
Sbjct: 1  MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE 60

Query: 61 GEKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94
          GEKY+EHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94

[Close]

BLAST of Spg036311 vs. ExPASy TrEMBL
Match: A0A1S3AVT0 (uncharacterized protein LOC103483212 OS=Cucumis melo OX=3656 GN=LOC103483212 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.3e-44
Identity = 90/94 (95.74%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MAP-STISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRAAGVLDNFAE 60
          MAP ST+SRWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEVRVSKENRAAGVLDNFAE
Sbjct: 1  MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE 60

Query: 61 GEKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94
          GEKY+EHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94

[Close]

BLAST of Spg036311 vs. TAIR 10
Match: AT3G48140.1 (B12D protein )

HSP 1 Score: 147.1 bits (370), Expect = 6.9e-36
Identity = 68/85 (80.00%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 7  SRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRAAGVLDNFAEGEKYAEH 66
          SRWLRPEVYPLFAA GVAVGIC F L+RNI  NPEVR +KENRAAG+LDN AEGEKY E+
Sbjct: 3  SRWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKEN 62

Query: 67 FLRKFVRNKSPEIMPSINNFFTDPS 92
          FLRKFVRNK PEIMP +N FFTDP+
Sbjct: 63 FLRKFVRNKKPEIMPGLNKFFTDPT 87

[Close]

BLAST of Spg036311 vs. TAIR 10
Match: AT3G29970.1 (B12D protein )

HSP 1 Score: 102.4 bits (254), Expect = 1.9e-22
Identity = 42/83 (50.60%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 6  ISRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRAAGVLDNFAEGEKYAE 65
          + RW+RPEVYPL  A+G    +  FQL RN  +NP+ R++KE+R  G+L+N  EGEKYA+
Sbjct: 1  MGRWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQ 60

Query: 66 HFLRKFVRNKSPEIMPSINNFFT 89
          H  RK++R + P++MPS+N FF+
Sbjct: 61 HNFRKYLRTRQPQVMPSLNRFFS 83

The following BLAST results are available for this feature:

BLAST of Spg036311 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137737.1	2.6e-45	97.85	uncharacterized protein LOC111009092 [Momordica charantia]	[more]
XP_022924187.1	1.7e-44	95.70	uncharacterized protein LOC111431708 [Cucurbita moschata] >XP_023519445.1 unchar...	[more]
XP_023000853.1	8.4e-44	94.62	uncharacterized protein LOC111495175 [Cucurbita maxima]	[more]
XP_038893556.1	1.1e-43	96.81	uncharacterized protein LOC120082448 [Benincasa hispida]	[more]
XP_008437938.1	1.1e-43	95.74	PREDICTED: uncharacterized protein LOC103483212 [Cucumis melo] >KAA0055200.1 unc...	[more]

BLAST of Spg036311 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg036311 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C941	1.3e-45	97.85	uncharacterized protein LOC111009092 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1E888	8.2e-45	95.70	uncharacterized protein LOC111431708 OS=Cucurbita moschata OX=3662 GN=LOC1114317...	[more]
A0A6J1KNV1	4.1e-44	94.62	uncharacterized protein LOC111495175 OS=Cucurbita maxima OX=3661 GN=LOC111495175...	[more]
A0A5A7UIX5	5.3e-44	95.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AVT0	5.3e-44	95.74	uncharacterized protein LOC103483212 OS=Cucumis melo OX=3656 GN=LOC103483212 PE=...	[more]

BLAST of Spg036311 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48140.1	6.9e-36	80.00	B12D protein	[more]
AT3G29970.1	1.9e-22	50.60	B12D protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010530	NADH-ubiquinone reductase complex 1 MLRQ subunit	PFAM	PF06522	B12D	coord: 11..78 e-value: 1.1E-25 score: 89.2
None	No IPR available	PANTHER	PTHR33417:SF13	OS07G0274700 PROTEIN	coord: 4..92
None	No IPR available	PANTHER	PTHR33417	G-BOX BINDING PROTEIN	coord: 4..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg036311.1	Spg036311.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000380	alternative mRNA splicing, via spliceosome
cellular_component	GO:0016021	integral component of membrane