Spg032425.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg032425.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold2: 29607425 .. 29610708 (+)
Sequence length477
RNA-Seq ExpressionSpg032425.1
SyntenySpg032425.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGAAGCAGATGAGTGTTCCCTTAAGTGGTTACTCCGAGTCTTGAACAAAGGGCCCTACCCTCTCAATGGCACGAGAGGGTTTTCTGTTTGATGGTTGGACCACAAACAGGTTGTTCATTAGAGGAGAATTTGTACTTAAGGAAATAGAGGTAACCCAGGGGTAAAACGGTAATTTGACCCAGCTGGTGTTACGGACACTTGTGAAGGACTAACTAGTCGATATTGGTCTATATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGCAACTTTGAGTCTATAGTGGAATGAACACACAGTTAACGAATATTGATTAATGTGGTTAATGAGTTTGACCAATTAATCTCACATCGTTGGAGCTTCTGATCTGCAGGTCCATTAGGTCCCACTGGTAGCTCATAAAGTAATTTGAGGCAACTAAGTAATAAATGTAAATTGAAAATGTTCAATTTACTAAGGGAAACAAATATAATATATATTGATATATTATTATGAGAGAAATTAATATTTGAAGAAATTCAAATATAAATTTATGGAAGTTTGAAAGAGTTCAAATAATGAATTAATTAATTTAAGGCCTAAAATGTGTTTGGGCAAATTAATTAATTCTAGGCCGGAAATTAAATATGTGATATTTAATTGGTGGGAATTAATCAATTATGGAAATAATTAATCACTTAAGGAAGTGATTAATCATTTATGGAAATGATCTAATCACTTATGGAAGTAATTAGTCATTTGTGGAAAAGATTAATCAATTGTGGAATTGATTGATCATGATTGATTAATTAAGGAATAAGATTGAATCAATTTTGGAAAAGATTGATTTAATTGAATATTTTATTCATGGCCTCTCTTCTATAAATAGAACACTAGACCTAATTGGTCGAGGACACTTGACACTTTGCTCTTGCTCTTAGACTCTCAAGACAAGACCTAGAATTCTCTCTAGCCTCCCTCTTAGAGAAAGACTCCCACAAGTCTTTTGCCTCCTAGACCTAGAGTCATATCTGTGTAACCTCTGTGGTTATTGTGTCATTCAAGAAGAATTTTCCAGCGATCACAAGACAAAGGAGGCTGCTGCGTTTTGTTCGTTGGAGCATCGTTGGCGACGAACGGTCAAGTCTACAACGGAGGTTTGTAACGGTTCTTCCCCTTTTCTTTAGAAAAGCATGAAAATAAATTTAGATTTATTTTTAAGCATGTTTAAACTGATTTTCCAGCAACTTTAAAGAGTGTTTAAAGTTTGTTTGAGTTTTCGTAACGGTATTTTAATGTTAATTAATATACGGCGTAAGGTCCAATCGATGCGCTTCCGCTGCGTGGGGACTTTTATTCCCTTCAATTGAGTCGGCGAAAAGGCCACTCTCACCCGTACAAATCAAAGGACAATCCCTCATGGACAGGAGTCCATAATCCACTCAGGATTAAGGCCAAGTTGCCTAGGTCATCCTAGTGAAATAGAAACCGAGCTAACTAACGGTGTTACAGTTAGTGGTTAACTATTTCGCGGTCCAGTCTTTGTGCAAACTCATTGCACAGGATACCCCTACTCGCATGTCAACTACATGAACGCGTTGGATCACTACGTTTGTATCAATATACAAAGCGGGCTGTATCCATAGTGTCACCAGGACAAGGTACCCAGCCTTATCCCTATACTACAGACCCTTTAGGCTAAAACTTGAACATTGATCCCCGTATGTCCCTACATACTAGTTCAAGCCTCATTCTATTAGCCTTGGATGTTTAGTTTATTGGATTAGGGTTAATAAGGCAAGATATAATACAAACATTGAATAATACATTACTTTTATTAATGTTCGGTCAAATGTACATTTACTATCTACGAGTTTTAGGGCATAAAACCCAACAATATTATCGTTATCGGCGTCATAATAATATGGTGTTTAATAATTAGAATATGATTGTTATTTTTCCAACACCATAGAAGCATGTTATAGGGCTAATCATTAAATTTTTATAATAAATTATAAAATTGATTAGAAACCGTCAACCTATAACAAAGAGTTGCATGCAAACATAGGACCTTAGGTTAAAATGAATTAATTTTAAAATGTTTAAAATTAATTAGACCTAAGCTCATTATAATTCTAATAGGATTAGAATTATTTTCTTACTTAGAATTAAAAATAGTTTTAATTGACTAAGTAGGAAAAACATTACTATGATTATAAGGGAACTCCACCGGTTAAGTTCTGTCTAAGGCTGGGGGTACTTAAGATGACGGTTTACGGAACACCTCCTACCTGGAAACTAACCCGGAATACCGGAGTTGAATTAGTCATAGTTAAATGTTAGTATGCAATATCACTAGGTTTATTAAAAGAGTTTAATTCACCTAGATTTTTAGAGTAAAGAGTTTACTTTACTATGGTTATAAGGGAACTCTCCCGATGAAGTTCTGTCTAAGGCTGGAGGTACTTAAGATGACGGTTTACGGAACACCTGCTACCTGGGAACTGACTCGGAACTTGAGTTAAATTAACCATAGTTATGTTAGCATGCAATATCACTAGGTCAATTAAAAGAGTTTAGTTCACCTAGATCTTTAGAGTAAAGATTTATCATAACTATTGGTTATAAGGGAACTCTACTGGTAAAGTTCTGTCTATGGCTGGAGGTACTTAAGATGACGGTTTACGGAACACCTGCTACCTGGAAACTGAGCCGGAACATGAGTTGAATTAACCATAGTTATATTAGCATGCAATGTCTCTAGGTAATTAAAAGTGTTTAATCCACCTAGACATTAGAGAAAAGACCTATATATATAAAAGTTATATACAGGCATAGACTTAGATAGATTCACTTAGCCGGAATTTACCTAAGTAATAGACCCTATAATTATAAAAATACTTAGTGGGAGGAAATATATCAAAACAAGATTTTCATAAATCAAGTTTTGCTCTCACGTCCTCAAAAGTTCACAACGTGAGGTTCATGCTTGGCCTCGAGTCACCCTGGGAGTGACTCCCTACGGATGGTGTTTGCATGGATCAATATCAAGGTGAATGAGGGAGTATTTTATAGTAAGTGGGAGCAGGAACGTGTCAACGTATCCTACGGTCTCCTCCATTAGGTTGCACCGTGAGATCCCAATGATCTGCCTGCGAGTCGCCCTGGGAGCGATCACCCTACGGAGGGCTTGATCATGGGAGTCGAAACAACGCAAGCTCCAGAAATGGATAGGGTTTCTTAG

mRNA sequence

ATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGAAGCAGATGAGTGTCCATTAGGTCCCACTGAAGAATTTTCCAGCGATCACAAGACAAAGGAGGCTGCTGCGTTTTGTTCGTTGGAGCATCGTTGGCGACGAACGGTCAAGTCTACAACGGAGGGAACTCCACCGGTTAAGTTCTGTCTAAGGCTGGGGGTACTTAAGATGACGGTTTACGGAACACCTCCTACCTGGAAACTAACCCGGAATACCGGAGTTGAATTAGTCATAGTTAAATGGAACTCTCCCGATGAAGTTCTGTCTAAGGCTGGAGGGAACTCTACTGGTAAAGTTCTGTCTATGGCTGGAGATCCCAATGATCTGCCTGCGAGTCGCCCTGGGAGCGATCACCCTACGGAGGGCTTGATCATGGGAGTCGAAACAACGCAAGCTCCAGAAATGGATAGGGTTTCTTAG

Coding sequence (CDS)

ATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGAAGCAGATGAGTGTCCATTAGGTCCCACTGAAGAATTTTCCAGCGATCACAAGACAAAGGAGGCTGCTGCGTTTTGTTCGTTGGAGCATCGTTGGCGACGAACGGTCAAGTCTACAACGGAGGGAACTCCACCGGTTAAGTTCTGTCTAAGGCTGGGGGTACTTAAGATGACGGTTTACGGAACACCTCCTACCTGGAAACTAACCCGGAATACCGGAGTTGAATTAGTCATAGTTAAATGGAACTCTCCCGATGAAGTTCTGTCTAAGGCTGGAGGGAACTCTACTGGTAAAGTTCTGTCTATGGCTGGAGATCCCAATGATCTGCCTGCGAGTCGCCCTGGGAGCGATCACCCTACGGAGGGCTTGATCATGGGAGTCGAAACAACGCAAGCTCCAGAAATGGATAGGGTTTCTTAG

Protein sequence

MGSWEHNRTRWNSLLPDFREADECPLGPTEEFSSDHKTKEAAAFCSLEHRWRRTVKSTTEGTPPVKFCLRLGVLKMTVYGTPPTWKLTRNTGVELVIVKWNSPDEVLSKAGGNSTGKVLSMAGDPNDLPASRPGSDHPTEGLIMGVETTQAPEMDRVS
Homology
The following BLAST results are available for this feature:
BLAST of Spg032425.1 vs.
Match NameE-valueIdentityDescription
BLAST of Spg032425.1 vs.
Match NameE-valueIdentityDescription
BLAST of Spg032425.1 vs.
Match NameE-valueIdentityDescription
BLAST of Spg032425.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..158

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg032425Spg032425gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg032425.1-cdsSpg032425.1-cds-scaffold2:29607425..29607494CDS
Spg032425.1-cdsSpg032425.1-cds-scaffold2:29607859..29607876CDS
Spg032425.1-cdsSpg032425.1-cds-scaffold2:29608530..29608621CDS
Spg032425.1-cdsSpg032425.1-cds-scaffold2:29609685..29609802CDS
Spg032425.1-cdsSpg032425.1-cds-scaffold2:29609891..29609926CDS
Spg032425.1-cdsSpg032425.1-cds-scaffold2:29610094..29610129CDS
Spg032425.1-cdsSpg032425.1-cds-scaffold2:29610602..29610708CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg032425.1Spg032425.1-proteinpolypeptide