Spg030926 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg030926
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationscaffold11: 28315252 .. 28318896 (-)
RNA-Seq ExpressionSpg030926
SyntenySpg030926
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGATCCGCCTAGGGTGAGGTTCGAGCTTGATCCAGAAATCGAGAGGACATTCAGGATAAGAAGGAGAGAGCAGCGTAGACAGCAAAATCAAATGGCTGACGTGCCGCATCTACCGCAGGGTCCTGAAGGTTTAGCGAACCCCCAGCAGAATCGTGTGCTGCAGCAAAACCCGCCGCTGGAGCAAAATGAGCAGCAAAATAATCAGGCTGAGAATCCTATCTTGGTAGTGAACGATAGGACCAGAGCCATTCGAGCTTATGCTTTTCCAATGTTTGATGAGTTGAATCCAGGGATTGCACGTCCTCAAATTCAAGCAGCAAATTTTGAAATGAAACCGGTAATGTTTCAGATGTTGCAAACTGTGGGGCAGTTCCATGGTTTGGCATCTGAAGACCCTCATTTACATCTTAAGTCTTTTCTAGGAGTTAGTGATTCTTTTGTAATTCAAGGAGTGCCTTGAGATGCTCTTAGATTAACTTTGTTCCCGTATTCTTTGAGGGATGGAGCGAAGGCAGGGTTAAATTCTTTTGCTCCAGGATCAATTAGGACATGGGATGAGTTAGCTGAAAAATTTTTGAGTAAATATTTTCCACCTAATAGAAATGCTAAATTAAGGAGTGAAATAGTAGGGTTTAGGCAACTTGAAGATGAGACTTTTAGTGAGGCTTGGGAGAGGTTTAAGGAGCTTTTGCGAAAGTGTCCCCACCATGGCTTACCACATTGTATCCAAATGCAAACATTTTACAATGGATTAAACGCGGTAACTCAAGGTATGGTTGATGCTTCGGCTGGAGGGGCCCTTTTGGCAAAAACTTTTAACGAAGCCTATGAAATTTTAGAAAGAATATCTACTAATAGTTGTCAGTGGTCGGATGTTAGAGGCACAAATAAAAAGGTTAAGAGTGTATTAGAAGTTGATGGTGTGTCCACCATTAGGGCTGATCTTGCAATGATTGCTAACGCTCTTAAGAATGTGACAGTGATTAGTCATCAACAGCCGCCAGTTGTGGAGCCTGCTGCAGTGGTGAACCAAGTTGCAGAGGAAGCTTGTGTCTATTGTGGTGAAGATCACAACTACGAGTTTTGCCCCAGCAATCCAGCTTCTGTGTTTTTTGTAGGTAATCAGAGGAATAACCCTTATTCTAACTTTTATAATCCAGGTTGGCGCAACCACCCCAACTTCGCGTGGGGAGGACAAGGGAGTAATGTGCAAGCACAGCAAAAGGTGAACCAGCCGGAATTTGCTAAAGCGCAGGTATTGCCCCAGCAAAATAAGCAGGCTTTGCCCCAGCAGAATTCGGGGAATTCTCTCGAGGCAATGATGAAAGAATTTATGGCTCGTACAGACGCCGCAATTCAAAGTAATCAAGCTTCAATGAGAGCCCTTGAATTGCAAGTGGGACAGCTAGCCAATGAGCTGAAGGCAAGGCCTCAAGGGAAACTTCTTTCAGATACTGAACACCCAAGAAGGGAAGGTAAGGAGCAGGTAAAGGCAGTGACTCTTAGGAGTGGTAAGCCACTAGAAGAAAGAAAAGGGCCTAGTAAAACCCAGGATACAGATGGTAATTGTGATAGAAATGTTGTTGTTGAGAAAGAGTTGGAGTCTGGTCAGGGTGCTGGAGGCAGCAATAAAGATGCTGGAGCATCTGGTTCTGTTCCAGATGTGGAACCACCTTATGTGCCGCCCCCACCTTATGTACCACCTCTACCTTTTCCACAAAGGCAAAAGCCTAAGAATCAGGATGGTCAATTTAAAAAGTTTTTAGAGATTCTTAAGCAATTGCATATAAATATCCCTTTAGTAGAAGCTATTGAGCAAATGCCTAATTATGCTAAATTTCTTAAGGATATTTTAACTAAAAAGAAGAGGTTAGGTGAGTTTGAAATTGTATCCCTCACTGAGGAATGTAGTGCTATTCTTAAGAATGGGCTACCACCCAAGGCTAAGGATCCAGGATCATTTACTATACATGTGTCTATAGGTGGAAAAGAGTTAGGTAGAGCACTCTGTGATTTAGGTGCAAGCATTAACCTTATGCCTCTTTCGGTCTATCGGAAGTTAGGTATTGGTGAAGCTAGACCTACCACAGTTACACTCCAATTAGCTGATAGGTCTATCACATATCCTGAGGGGAAAATTGAGGATGTCTTAGTAAAGGTAGATAAATTCATATTTCCTGTTGATTTTATTATCTTAGACTATGAGGCTGATAAAGATGTCCCAATTATTCTAGGTCGTCCATTTTTGGCTACTGGTAGGGCATTGATAGATGTTCAAAAAGGGGAATTAACAATGAGGGTTTGTAATGAGGAAGTAAAATTTAATGTGTTTAAGGCCATGAAATATCCAGACAAAATGGAAGATTGCTCTTTCATTAGGATTCTGGAGAACACAATTGTTGAGACAGCAATGGAGGATTTGGCAAATAAGCATTTGGAGAATCATGGAGAGGTTAGTGTAGAGGATTTAGAAGTTTGTTCGTTAGAAAGAAAAAATGAAAAAGAAGTGTTTAGGTGTGAGGATGTTTTTGAGTCTTTGGATTTGGATGAAAGGAAAGCTCCTCCTATTAAACCATCCCTGATTGAGGCACCTACTTTAGATTTGAAACCCTTGCCGGATCATCTAAAGTATGTGTATCTTGGGGAGGGTGAGACGTTGCCCATTATTGTGGCATCAGATTTAATGCCGGAGGATGAAGAAGCTTTAATAAAGTTGCCTTTGTGTATTCTTCTCAAATCAGTGTTCCAAGTGTGCTTCATTGATGAACGGTTATTTACAGTAGCTCATATTAAGGCAGTGAAAGCACCTTGGTATGATGACATTTCCAATAACCTTGATTTTGGAAATTTGTCTCCTGGTTTATCAAAAGAACAGATGAAAGAATTTTTCCATGGGGTGAAGTTTTATTTATCAAATGATGCATCTGTGGTTAGACAATGTGTTGATGATGGCTGTGAGTTTGAAGAAGGGCAGCGAATAGAGCATTACTGGAGGGAGGAGTTTCGTTCGAAATATCTCTCTCTGAAGTTGCTGGCAAATTAGGGGAGCACAGGTTTTGCGGGAGCAGTTCTTATTGCAATATTTTTAGCTCCCAGAATTTGTTGCGATTTTATCTTGTGGATTTTATCTGATTCTGATTTGAATTATTTTAAAATTGGATTTTATTGATTTAAATTTTATCTGATTCATTGGAATATTTTCGTAGATTTTATTTTCAGTTTATTTAATTGTATTTATCGTTAATTTAATTGATTTAATCGGATTAGTTTAGATTAGATTTTAGGTTGTATTTTCGTTATTTGATATTTATGTTTAGTTTAGATTTAATAACGAGTTTCTCTAATTTATTCGGCTGCAATTGAAAATAAAAGATTAGATTTGATCGATTCAATTTAAATTTGAATTTAAAAAGATTTGATTTTCCTGTTTTTAAATTTGAATTCTGTATCCACGTTTCTTCAGGTAATCTTTTGTCCAGAAGGATGTTACGGCAAAGTTATGGCTGAAGCAAATCTTTCGACCGAATAGGAAGGGTTTTGTTGAAGATTAATTTCTTTTTACCGTTTGAATTTTAAATTTCCGTGTGCAGGAAATTGCATGAGGAATTACGATGCTGCCACGTGTCACGCAGAGGCTTAA

mRNA sequence

ATGAGCGATCCGCCTAGGGTGAGGTTCGAGCTTGATCCAGAAATCGAGAGGACATTCAGGATAAGAAGGAGAGAGCAGCGTAGACAGCAAAATCAAATGGCTGACGTGCCGCATCTACCGCAGGGTCCTGAAGGGTTTAGGCAACTTGAAGATGAGACTTTTAGTGAGGCTTGGGAGAGGTTTAAGGAGCTTTTGCGAAAGTGTCCCCACCATGGCTTACCACATTGTATCCAAATGCAAACATTTTACAATGGATTAAACGCGGTAACTCAAGGTATGGTTGATGCTTCGGCTGGAGGGGCCCTTTTGGCAAAAACTTTTAACGAAGCCTATGAAATTTTAGAAAGAATATCTACTAATAGTTGTCAGTGGTCGGATGTTAGAGGCACAAATAAAAAGGTTAAGAGTGTATTAGAAGTTGATGGTGTGTCCACCATTAGGGCTGATCTTGCAATGATTGCTAACGCTCTTAAGAATGTGACAGTGATTAGTCATCAACAGCCGCCAGTTGTGGAGCCTGCTGCAGTGGTATTGCCCCAGCAAAATAAGCAGGCTTTGCCCCAGCAGAATTCGGGGAATTCTCTCGAGGCAATGATGAAAGAATTTATGGCTCGTACAGACGCCGCAATTCAAAGTAATCAAGCTTCAATGAGAGCCCTTGAATTGCAAGTGGGACAGCTAGCCAATGAGCTGAAGGCAAGGCCTCAAGGGAAACTTCTTTCAGATACTGAACACCCAAGAAGGGAAGGTAAGGAGCAGGTAAAGGCAGTGACTCTTAGGAGTGGTAAGCCACTAGAAGAAAGAAAAGGGCCTAGTAAAACCCAGGATACAGATGGTAATTGTGATAGAAATGTTGTTGTTGAGAAAGAGTTGGAGTCTGGTCAGGGTGCTGGAGGCAGCAATAAAGATGCTGGAGCATCTGGAAATTGCATGAGGAATTACGATGCTGCCACGTGTCACGCAGAGGCTTAA

Coding sequence (CDS)

ATGAGCGATCCGCCTAGGGTGAGGTTCGAGCTTGATCCAGAAATCGAGAGGACATTCAGGATAAGAAGGAGAGAGCAGCGTAGACAGCAAAATCAAATGGCTGACGTGCCGCATCTACCGCAGGGTCCTGAAGGGTTTAGGCAACTTGAAGATGAGACTTTTAGTGAGGCTTGGGAGAGGTTTAAGGAGCTTTTGCGAAAGTGTCCCCACCATGGCTTACCACATTGTATCCAAATGCAAACATTTTACAATGGATTAAACGCGGTAACTCAAGGTATGGTTGATGCTTCGGCTGGAGGGGCCCTTTTGGCAAAAACTTTTAACGAAGCCTATGAAATTTTAGAAAGAATATCTACTAATAGTTGTCAGTGGTCGGATGTTAGAGGCACAAATAAAAAGGTTAAGAGTGTATTAGAAGTTGATGGTGTGTCCACCATTAGGGCTGATCTTGCAATGATTGCTAACGCTCTTAAGAATGTGACAGTGATTAGTCATCAACAGCCGCCAGTTGTGGAGCCTGCTGCAGTGGTATTGCCCCAGCAAAATAAGCAGGCTTTGCCCCAGCAGAATTCGGGGAATTCTCTCGAGGCAATGATGAAAGAATTTATGGCTCGTACAGACGCCGCAATTCAAAGTAATCAAGCTTCAATGAGAGCCCTTGAATTGCAAGTGGGACAGCTAGCCAATGAGCTGAAGGCAAGGCCTCAAGGGAAACTTCTTTCAGATACTGAACACCCAAGAAGGGAAGGTAAGGAGCAGGTAAAGGCAGTGACTCTTAGGAGTGGTAAGCCACTAGAAGAAAGAAAAGGGCCTAGTAAAACCCAGGATACAGATGGTAATTGTGATAGAAATGTTGTTGTTGAGAAAGAGTTGGAGTCTGGTCAGGGTGCTGGAGGCAGCAATAAAGATGCTGGAGCATCTGGAAATTGCATGAGGAATTACGATGCTGCCACGTGTCACGCAGAGGCTTAA

Protein sequence

MSDPPRVRFELDPEIERTFRIRRREQRRQQNQMADVPHLPQGPEGFRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAKTFNEAYEILERISTNSCQWSDVRGTNKKVKSVLEVDGVSTIRADLAMIANALKNVTVISHQQPPVVEPAAVVLPQQNKQALPQQNSGNSLEAMMKEFMARTDAAIQSNQASMRALELQVGQLANELKARPQGKLLSDTEHPRREGKEQVKAVTLRSGKPLEERKGPSKTQDTDGNCDRNVVVEKELESGQGAGGSNKDAGASGNCMRNYDAATCHAEA
Homology
BLAST of Spg030926 vs. NCBI nr
Match: XP_030509265.1 (uncharacterized protein LOC115723943 [Cannabis sativa])

HSP 1 Score: 233.0 bits (593), Expect = 3.6e-57
Identity = 129/243 (53.09%), Postives = 171/243 (70.37%), Query Frame = 0

Query: 46  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAK 105
           F++LEDE+ S+AWERFKELLRKCPHHG+PHCIQM+TFYNGLNA ++ ++DASA GA+L+K
Sbjct: 54  FKELEDESTSDAWERFKELLRKCPHHGIPHCIQMETFYNGLNAASRMVLDASANGAILSK 113

Query: 106 TFNEAYEILERISTNSCQWSDVRG-TNKKVKSVLEVDGVSTIRADLAMIANALKNVTVIS 165
           ++NEA+EILE I++N+ QWS+ R  T++KV  VLEVD ++ + A +A + N   N++   
Sbjct: 114 SYNEAFEILETIASNNYQWSNTRAPTSRKVAGVLEVDAITALTAQMASMTNNHPNLSWGG 173

Query: 166 HQQPPVVEPAAVVLPQQNKQALP-------------QQNSGNSLEAMMKEFMARTDAAIQ 225
                   PA      Q +QA P             Q    +SLE++M+++MA+ DA IQ
Sbjct: 174 QGASSSTAPA------QGRQAYPPGFSQQPRHSQHAQNAQPSSLESLMRDYMAKNDAVIQ 233

Query: 226 SNQASMRALELQVGQLANELKARPQGKLLSDTEHPRREGKEQVKAVTLRSGKPL----EE 271
           S  AS+R LELQ+G LANELKARPQG L SDTE+PRR+GKEQ K++ LRSGK L    EE
Sbjct: 234 SQAASLRNLELQLGHLANELKARPQGSLPSDTENPRRDGKEQCKSIHLRSGKHLKNSEEE 290

BLAST of Spg030926 vs. NCBI nr
Match: XP_030494802.1 (uncharacterized protein LOC115710583 [Cannabis sativa])

HSP 1 Score: 226.9 bits (577), Expect = 2.6e-55
Identity = 130/281 (46.26%), Postives = 179/281 (63.70%), Query Frame = 0

Query: 46  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAK 105
           F+Q EDET S+AWERFKE+LRKCPHHG+PHCIQ++TFYNGLNA ++ ++DASA GA+L+K
Sbjct: 85  FQQSEDETTSDAWERFKEVLRKCPHHGIPHCIQLETFYNGLNAASRMVLDASANGAILSK 144

Query: 106 TFNEAYEILERISTNSCQWSDVRG-TNKKVKSVLEVDGVSTIRADLAMIANALKNVTVIS 165
           ++NEA+EILERI++N+ QWS  R  T++KV  VLEVD ++ + A +A + N LKN+ +  
Sbjct: 145 SYNEAFEILERIASNNYQWSTNRAPTSRKVAGVLEVDALTALTAQMASMTNILKNMNMGG 204

Query: 166 HQQPPVV----------------------EPAAVVL------------------------ 225
             QP                          PA+V                          
Sbjct: 205 SVQPAATIQRAEISCVYCGDGHTFENCPSNPASVCYVGASSSGAEQAQGKQSFPPGFSQQ 264

Query: 226 --PQQNKQALPQQNSGNSLEAMMKEFMARTDAAIQSNQASMRALELQVGQLANELKARPQ 278
             PQQ  Q  PQ +  +SLE++M+++MA+ DA IQS  AS++ LE+Q+GQLAN+LK RPQ
Sbjct: 265 PRPQQPHQ--PQGSQTSSLESLMRDYMAKNDAVIQSQAASLQNLEIQLGQLANDLKNRPQ 324

BLAST of Spg030926 vs. NCBI nr
Match: XP_030503898.1 (uncharacterized protein LOC115719117 [Cannabis sativa])

HSP 1 Score: 223.8 bits (569), Expect = 2.2e-54
Identity = 132/295 (44.75%), Postives = 175/295 (59.32%), Query Frame = 0

Query: 46  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAK 105
           F+QLEDET S+AWERFKELLRKCPHHG+PHCIQ++TFYNGLNA ++ ++DASA GA+L+K
Sbjct: 136 FQQLEDETTSDAWERFKELLRKCPHHGIPHCIQLETFYNGLNAASRMVLDASANGAILSK 195

Query: 106 TFNEAYEILERISTNSCQWSDVRG-TNKKVKSVLEVDGVSTIRADLAMIANALKNVTVIS 165
           ++NEA+EILERI++N+ QWS  R  T++KV  VLEVD ++ + A +A + N LKN+ +  
Sbjct: 196 SYNEAFEILERIASNNYQWSTNRAPTSRKVAGVLEVDALTALTAQMASMTNILKNMNMGG 255

Query: 166 HQQP-------------------------------------------------------- 225
             QP                                                        
Sbjct: 256 SVQPARHSKGEISSFLCYVGNQNFNRNNNPYSNSYNPAWKHHPNFSWGGQGASSSGAQGQ 315

Query: 226 --PVVEPAAVVLPQQNKQALPQQNSGNSLEAMMKEFMARTDAAIQSNQASMRALELQVGQ 276
                 P     P+  +   PQ +  +SLE++M+++MA+ DA IQS  AS+R LE+Q+GQ
Sbjct: 316 GKQSFPPGFSQQPRPQQPHQPQGSQTSSLESLMRDYMAKNDAVIQSQAASLRNLEVQLGQ 375

BLAST of Spg030926 vs. NCBI nr
Match: XP_030505222.1 (uncharacterized protein LOC115720205 [Cannabis sativa])

HSP 1 Score: 219.5 bits (558), Expect = 4.1e-53
Identity = 127/270 (47.04%), Postives = 168/270 (62.22%), Query Frame = 0

Query: 46  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAK 105
           F+QLEDET S+AWERFKELLRKCPHHG+PHCIQ++TFYNGLNA ++ ++DASA GA+L+K
Sbjct: 3   FQQLEDETTSDAWERFKELLRKCPHHGIPHCIQLETFYNGLNAASRMVLDASANGAILSK 62

Query: 106 TFNEAYEILERISTNSCQWSDVRG-TNKKVKSVLEVDGVSTIRADLAMIANALKNVTVIS 165
           ++NEA+EILERI++N+ QWS  R  T++KV  VLEVD ++ + A +A + N LKN+ +  
Sbjct: 63  SYNEAFEILERIASNNYQWSTNRAPTSRKVAGVLEVDALTALTAQMASMTNILKNMNMGG 122

Query: 166 HQQPPVVEPAAVV----------------------------------------------- 225
             QP      A +                                               
Sbjct: 123 SVQPAAAIQRAEISCVYCGDGHTFENCPSNPNFLLLCGASSSGAQQAQGKQSFPPGFSQQ 182

Query: 226 -LPQQNKQALPQQNSGNSLEAMMKEFMARTDAAIQSNQASMRALELQVGQLANELKARPQ 267
             PQQ  Q  PQ +  +SLE++M+++MA+ DA IQS       LE+Q+GQLAN+LK RPQ
Sbjct: 183 PRPQQPHQ--PQGSQTSSLESLMRDYMAKNDAVIQSQAKISSNLEVQLGQLANDLKNRPQ 242

BLAST of Spg030926 vs. NCBI nr
Match: XP_030510138.1 (uncharacterized protein LOC115724905 [Cannabis sativa])

HSP 1 Score: 218.8 bits (556), Expect = 6.9e-53
Identity = 131/293 (44.71%), Postives = 174/293 (59.39%), Query Frame = 0

Query: 46  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAK 105
           F+QLEDET S+AWERFKELLRKCPHHG+PHCIQ++TFYNGLNA ++ ++DASA GA+L+K
Sbjct: 122 FQQLEDETTSDAWERFKELLRKCPHHGIPHCIQLETFYNGLNAASRMVLDASANGAILSK 181

Query: 106 TFNEAYEILERISTNSCQWSDVRG-TNKKVKSVLEVDGVSTIRADLAMIANALKNVTVIS 165
           ++NEA+EILERI++N+ QWS  R  T++KV  VLEVD ++ + A +A + N LKN+ +  
Sbjct: 182 SYNEAFEILERIASNNYQWSTNRAPTSRKVAGVLEVDALTALTAQMASMTNILKNMNMGG 241

Query: 166 HQQPPVV----------------------EPAAVV------------------------- 225
             QP                          PA+V                          
Sbjct: 242 SVQPAAAIQRAEISCVYCGDGHTFENCPSNPASVCYVGNQNFNRNNNPYSNSYNPAWKHH 301

Query: 226 --------------LPQQNKQAL----------PQQNSGNSLEAMMKEFMARTDAAIQSN 267
                            Q KQ+           PQ +  +SLE++M+++MA+ DA IQS 
Sbjct: 302 PNFSWGGQGASSSGAQGQGKQSFPPGFSQQPHQPQGSQTSSLESLMRDYMAKNDAVIQSQ 361

BLAST of Spg030926 vs. ExPASy TrEMBL
Match: A0A6J1G7Q6 (uncharacterized protein LOC111451598 OS=Cucurbita moschata OX=3662 GN=LOC111451598 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.4e-46
Identity = 128/302 (42.38%), Postives = 160/302 (52.98%), Query Frame = 0

Query: 46  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAK 105
           F++ E+ET SEAWERFKE LRKCPHHGLPHCIQ++TFYNGLN  T+ +VDASA G +L+K
Sbjct: 150 FQKFENETLSEAWERFKETLRKCPHHGLPHCIQIETFYNGLNTATKQVVDASANGDILSK 209

Query: 106 TFNEAYEILERISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRADLAMIANALKNV---- 165
           T+NEAYEILERI++N+CQW DVR    KK + VLEVD +S+I A LA + N L+N+    
Sbjct: 210 TYNEAYEILERIASNNCQWVDVRSNPGKKTREVLEVDALSSINAQLASMTNILQNLAFGQ 269

Query: 166 -----------TVI---------------------------------------------- 225
                      TV+                                              
Sbjct: 270 GSMIKAPAHTATVMIQTATESCVYCGEKHTFDQCPSNPASIFYVGNQASQGNPKTNPSSN 329

Query: 226 --------------------SHQQPPVVE-PAAVVLPQQ----NKQALPQQN-------- 253
                               + Q PP    P    L  Q    ++QA  Q          
Sbjct: 330 TYNPGWRNHPNFLCKGQGSYNQQMPPKANYPPGFGLQNQLTYDSQQATTQGEGTSQAQHI 389

BLAST of Spg030926 vs. ExPASy TrEMBL
Match: A0A5B6VWJ0 (Retroelement pol polyprotein-like OS=Gossypium australe OX=47621 GN=EPI10_024080 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 3.7e-44
Identity = 117/297 (39.39%), Postives = 161/297 (54.21%), Query Frame = 0

Query: 46  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAK 105
           F  ++DE+  EAWERFKELL+KCPHHG+PHCIQ++TFYNGL A T+ +VDASA GALL+K
Sbjct: 56  FHHMDDESLYEAWERFKELLQKCPHHGIPHCIQLETFYNGLKAHTRMVVDASANGALLSK 115

Query: 106 TFNEAYEILERISTNSCQWSDVR-GTNKKVKSVLEVDGVSTIRADLAMIANALKNVTVIS 165
           ++NEAYEI+ERI++N+ QW   R  + ++V  + EVD ++++ + ++ I++  KN+T   
Sbjct: 116 SYNEAYEIIERIASNNYQWPTSRAASGRRVAGIHEVDAITSLASQVSSISSMTKNLTTNG 175

Query: 166 HQ----QPP--------------------------------------------------- 225
                 QPP                                                   
Sbjct: 176 SNSFAAQPPNQFENIAYVYCGEGHLLEECPSNPESVYYMGNQNQNRGRQGLQSNFYNSSW 235

Query: 226 ------------------VVEPAAVVLPQ--QNKQALPQQNSGNSLEAMMKEFMARTDAA 267
                               +P    LP   Q  Q L Q  + NSLE+++K +MA+ DA 
Sbjct: 236 RNHLDFSWSNQGAGTSTVYTQPRPTQLPNFPQQVQKLVQAKASNSLESLLKTYMAKNDAL 295

BLAST of Spg030926 vs. ExPASy TrEMBL
Match: A0A6J1H7E4 (uncharacterized protein LOC111461168 OS=Cucurbita moschata OX=3662 GN=LOC111461168 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.3e-40
Identity = 80/116 (68.97%), Postives = 98/116 (84.48%), Query Frame = 0

Query: 46  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAK 105
           F+Q EDET SEAWERFKE+LRKCPHHGLPHCIQM+TFYNGLN  T+ +VDASA GA+L+K
Sbjct: 171 FQQFEDETLSEAWERFKEMLRKCPHHGLPHCIQMETFYNGLNIATKQVVDASANGAMLSK 230

Query: 106 TFNEAYEILERISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRADLAMIANALKNV 161
           T+NEAYEILERI++N+CQW+DVR    KK + VLEVD +S+I A LA + N L+N+
Sbjct: 231 TYNEAYEILERIASNNCQWADVRSNPGKKTRGVLEVDALSSINAQLASVTNILQNL 286

BLAST of Spg030926 vs. ExPASy TrEMBL
Match: A0A6J1EEI2 (uncharacterized protein LOC111433394 OS=Cucurbita moschata OX=3662 GN=LOC111433394 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.6e-39
Identity = 78/118 (66.10%), Postives = 99/118 (83.90%), Query Frame = 0

Query: 46  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAK 105
           F+Q ED+T SEAWERFKE+LRKCPHHGLPHCIQM+TFYNGLN  T+ +VDASA GA+L+K
Sbjct: 180 FQQFEDDTLSEAWERFKEMLRKCPHHGLPHCIQMETFYNGLNIATKQVVDASANGAILSK 239

Query: 106 TFNEAYEILERISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRADLAMIANALKNVTV 163
           T+NEAYEILERI++N+CQW+DVR    +K + VLEVD +S+I A LA + N L+N+ +
Sbjct: 240 TYNEAYEILERIASNNCQWADVRSNPGRKTRGVLEVDALSSINAQLASVTNILQNLAL 297

BLAST of Spg030926 vs. ExPASy TrEMBL
Match: A0A6J1EQ90 (uncharacterized protein LOC111436411 OS=Cucurbita moschata OX=3662 GN=LOC111436411 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.8e-38
Identity = 112/303 (36.96%), Postives = 149/303 (49.17%), Query Frame = 0

Query: 46  FRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMQTFYNGLNAVTQGMVDASAGGALLAK 105
           F+Q EDET SEA ERFKE+LRKCPHHGLPHCIQM+TFYNGLN VT+ +VDASA GA+L+K
Sbjct: 209 FQQFEDETLSEACERFKEMLRKCPHHGLPHCIQMETFYNGLNIVTKQVVDASANGAILSK 268

Query: 106 TFNEAYEILERISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRADLAMIANALKNV---- 165
           T+NEAYEILERI++N+CQW+DVR    +K + VLEVD +S+I A LA + N L+N+    
Sbjct: 269 TYNEAYEILERIASNNCQWADVRSNPGRKTRGVLEVDALSSINAQLASVTNILQNLALGQ 328

Query: 166 ------------------------------------------------------------ 225
                                                                       
Sbjct: 329 DSMIKAPVHTAAAINQTAAESCVYCGEEHTFDQCPSNPASIFYVGNQASQGNLKNNPFSN 388

Query: 226 -----------------TVISHQQPPVVE-PAAVVLPQQNKQALPQQN------------ 254
                            ++ + Q PP    P+   L  Q   +  Q N            
Sbjct: 389 TYNPGWRNHPNFSWKGQSLYNQQMPPKANYPSGFRLQNQLAYSSQQVNTQGKGTTQAQYT 448

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030509265.13.6e-5753.09uncharacterized protein LOC115723943 [Cannabis sativa][more]
XP_030494802.12.6e-5546.26uncharacterized protein LOC115710583 [Cannabis sativa][more]
XP_030503898.12.2e-5444.75uncharacterized protein LOC115719117 [Cannabis sativa][more]
XP_030505222.14.1e-5347.04uncharacterized protein LOC115720205 [Cannabis sativa][more]
XP_030510138.16.9e-5344.71uncharacterized protein LOC115724905 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1G7Q61.4e-4642.38uncharacterized protein LOC111451598 OS=Cucurbita moschata OX=3662 GN=LOC1114515... [more]
A0A5B6VWJ03.7e-4439.39Retroelement pol polyprotein-like OS=Gossypium australe OX=47621 GN=EPI10_024080... [more]
A0A6J1H7E47.3e-4068.97uncharacterized protein LOC111461168 OS=Cucurbita moschata OX=3662 GN=LOC1114611... [more]
A0A6J1EEI23.6e-3966.10uncharacterized protein LOC111433394 OS=Cucurbita moschata OX=3662 GN=LOC1114333... [more]
A0A6J1EQ901.8e-3836.96uncharacterized protein LOC111436411 OS=Cucurbita moschata OX=3662 GN=LOC1114364... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 45..87
e-value: 3.3E-6
score: 27.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 233..323
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 237..289
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..44
NoneNo IPR availablePANTHERPTHR24559:SF334SUBFAMILY NOT NAMEDcoord: 45..136
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 45..136

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg030926.1Spg030926.1mRNA