Spg025684 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg025684
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNA-binding protein 48
Location	scaffold13: 29327932 .. 29329047 (+)
RNA-Seq Expression	Spg025684
Synteny	Spg025684

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCAAACTCACGGTTTACCAAGTATTTTAGTTCATCTATTCTACGAGAGACCATGCTATATGCCTGTATATTTTTCTTATTCACACACTAATATAGTAGCAGCTGCAGTTATGTTCAGTATACCTCCATTTTCAGTTTCAGGTTATTAACAATTGCCTTTCTTCCTTTTCCTCTTTTTCCTAAAATAAATCAGTCTTGTTAAGACGAGGAATCTTTGTCTGTGGGACCTCTTGGCATGGTTTAGTAAAATTTCTCTTTTTCTTCCTTCTTTGTCTAGTCTTAATTCCCTTTGACAAGTTGTAGAACCATGTAGTCTTTGGTTATCTTTAGTGAATTTTGTCCTATTGATTTTTGAATGATGTACACGTCTAAATGATGTTGGTTGGACCATCATCACGGTTGGGTCAAGCTAGTGAAGGTTTAGGGGTCATTCTTGATAATGGGTTTTGAATCTTTTGTTTCTGGGTGAAGATATGGATTGAATATTTGTGTACGTTATTCTTTTTTATTTTTTATTTTTTATTTTTTATTTTTTTATTCTTGTCCTTGTTGCGTGGTCATTTTCTCATGGCTAAAAATGTAACTTTTTTTTTTTCTTGAGTACAGGATTACTTCGCATCTGAATCTATGAATCAAACTGTGCGTCTCGTCAGGGAAAAGCTTGATAAGGTTATAAAATTTACGTCTTATGGTTTATTTTCTACATTTGAGCTCATTGTAATATTAAACATTGCTTATTACCCTTTGTGATTTTAGATTCAATCAACCAGCGAACATCTGCAAGCTGGACCTGTGAGCAAGAAATCACGTGTGGACAATAGAAGAAGAATCTAATGCTTGCCGACCCTTTATAGAGAATGGCTAATGAGTGTCTCTACGTTGTATCAAAAGCTATTTTGACACATCACACACACACATATATACATATGCAGACATGCAGTGTACATATATCTATCAGTGGACACCTTTTATTACAATGGTGATTCGGTGAAAGTGGAATAGAGCATACACCAAAGTTCTGTAGGGAGAGTTTTACTGTCGCTTGCTCATTTCTTCTCTCTTATATGGATCACGATTGCAAATTTATATTTATAGTTAGTTTAAAAGCGCA

mRNA sequence

ATGGATGCAAACTCACGGTTTACCAAGTATTTTAGTTCATCTATTCTACGAGAGACCATGCTATATGCCTTACAGGATTACTTCGCATCTGAATCTATGAATCAAACTGTGCGTCTCGTCAGGGAAAAGCTTGATAAGATTCAATCAACCAGCGAACATCTGCAAGCTGGACCTGTGAGCAAGAAATCACGTGTGGACAATAGAAGAAGAATCTAA

Coding sequence (CDS)

ATGGATGCAAACTCACGGTTTACCAAGTATTTTAGTTCATCTATTCTACGAGAGACCATGCTATATGCCTTACAGGATTACTTCGCATCTGAATCTATGAATCAAACTGTGCGTCTCGTCAGGGAAAAGCTTGATAAGATTCAATCAACCAGCGAACATCTGCAAGCTGGACCTGTGAGCAAGAAATCACGTGTGGACAATAGAAGAAGAATCTAA

Protein sequence

MDANSRFTKYFSSSILRETMLYALQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI

Homology

[Close]

BLAST of Spg025684 vs. NCBI nr
Match: XP_022132316.1 (RNA-binding protein 48-like [Momordica charantia])

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-13
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 25  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI 72
           QDYFASESMNQTV LVREKLD+IQS+SEHLQAGPVSKKSRVDNRRRI
Sbjct: 180 QDYFASESMNQTVHLVREKLDQIQSSSEHLQAGPVSKKSRVDNRRRI 226

[Close]

BLAST of Spg025684 vs. NCBI nr
Match: XP_038884635.1 (RNA-binding protein 48 isoform X1 [Benincasa hispida])

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-13
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 25  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI 72
           QDYFASESMNQTV LVREKLDKIQS+SEHLQAGP SKKSR+DNRRRI
Sbjct: 180 QDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 226

[Close]

BLAST of Spg025684 vs. NCBI nr
Match: XP_004142975.1 (RNA-binding protein 48 isoform X2 [Cucumis sativus] >KGN62296.1 hypothetical protein Csa_018618 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-13
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 25  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI 72
           QDYFASESMNQTV LVREKLDKIQS+SEHLQAGP SKKSR+DNRRRI
Sbjct: 212 QDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 258

[Close]

BLAST of Spg025684 vs. NCBI nr
Match: XP_008444344.1 (PREDICTED: RNA-binding protein 48 isoform X2 [Cucumis melo] >XP_008444345.1 PREDICTED: RNA-binding protein 48 isoform X2 [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-13
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 12  SSSILRETMLYALQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI 71
           S  + + T + + QDYFASESMNQTV LVREKLDKIQS+SEHLQAGP SKKSR+DNRRRI
Sbjct: 115 SPHVSQMTRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 174

[Close]

BLAST of Spg025684 vs. NCBI nr
Match: XP_011649485.1 (RNA-binding protein 48 isoform X1 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-13
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 25  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI 72
           QDYFASESMNQTV LVREKLDKIQS+SEHLQAGP SKKSR+DNRRRI
Sbjct: 213 QDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 259

[Close]

BLAST of Spg025684 vs. ExPASy TrEMBL
Match: A0A6J1BRX6 (RNA-binding protein 48 OS=Momordica charantia OX=3673 GN=LOC111005197 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.7e-14
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 25  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI 72
           QDYFASESMNQTV LVREKLD+IQS+SEHLQAGPVSKKSRVDNRRRI
Sbjct: 180 QDYFASESMNQTVHLVREKLDQIQSSSEHLQAGPVSKKSRVDNRRRI 226

[Close]

BLAST of Spg025684 vs. ExPASy TrEMBL
Match: A0A1S3BAX9 (RNA-binding protein 48 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487697 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 12  SSSILRETMLYALQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI 71
           S  + + T + + QDYFASESMNQTV LVREKLDKIQS+SEHLQAGP SKKSR+DNRRRI
Sbjct: 115 SPHVSQMTRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 174

[Close]

BLAST of Spg025684 vs. ExPASy TrEMBL
Match: A0A5A7V5K4 (RNA-binding protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002210 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 12  SSSILRETMLYALQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI 71
           S  + + T + + QDYFASESMNQTV LVREKLDKIQS+SEHLQAGP SKKSR+DNRRRI
Sbjct: 167 SPHVSQMTRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 226

[Close]

BLAST of Spg025684 vs. ExPASy TrEMBL
Match: A0A0A0LQL2 (RNA-binding protein 48 OS=Cucumis sativus OX=3659 GN=Csa_2G348830 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 25  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI 72
           QDYFASESMNQTV LVREKLDKIQS+SEHLQAGP SKKSR+DNRRRI
Sbjct: 212 QDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 258

[Close]

BLAST of Spg025684 vs. ExPASy TrEMBL
Match: A0A1S3BA34 (RNA-binding protein 48 OS=Cucumis melo OX=3656 GN=LOC103487697 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 12  SSSILRETMLYALQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVSKKSRVDNRRRI 71
           S  + + T + + QDYFASESMNQTV LVREKLDKIQS+SEHLQAGP SKKSR+DNRRRI
Sbjct: 167 SPHVSQMTRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 226

[Close]

BLAST of Spg025684 vs. TAIR 10
Match: AT5G27300.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 50.4 bits (119), Expect = 6.7e-07
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 19  TMLYALQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVS------KKSRVDNRRRI 72
           T + + Q+YFAS SMNQ V+ VREKL+KI+ +    +  P S      K++RVDNRRRI
Sbjct: 517 TRVSSYQEYFASSSMNQMVKTVREKLNKIEESGNQKRLQPSSQTQPDFKRTRVDNRRRI 575

[Close]

BLAST of Spg025684 vs. TAIR 10
Match: AT5G27300.2 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 50.4 bits (119), Expect = 6.7e-07
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 19  TMLYALQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVS------KKSRVDNRRRI 72
           T + + Q+YFAS SMNQ V+ VREKL+KI+ +    +  P S      K++RVDNRRRI
Sbjct: 492 TRVSSYQEYFASSSMNQMVKTVREKLNKIEESGNQKRLQPSSQTQPDFKRTRVDNRRRI 550

[Close]

BLAST of Spg025684 vs. TAIR 10
Match: AT2G27790.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 45.4 bits (106), Expect = 2.2e-05
Identity = 29/70 (41.43%), Postives = 37/70 (52.86%), Query Frame = 0


Query: 25  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVS-----------------------K 72
           Q+YFAS SMNQTV+ VREKL+KI+ +    +  P S                       K
Sbjct: 171 QEYFASSSMNQTVKTVREKLNKIEESGNQKRLQPSSQTQPEESGNQKRLQPSSQIQPDLK 230

[Close]

BLAST of Spg025684 vs. TAIR 10
Match: AT2G27790.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 45.4 bits (106), Expect = 2.2e-05
Identity = 29/70 (41.43%), Postives = 37/70 (52.86%), Query Frame = 0


Query: 25  QDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVS-----------------------K 72
           Q+YFAS SMNQTV+ VREKL+KI+ +    +  P S                       K
Sbjct: 171 QEYFASSSMNQTVKTVREKLNKIEESGNQKRLQPSSQTQPEESGNQKRLQPSSQIQPDLK 230

The following BLAST results are available for this feature:

BLAST of Spg025684 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132316.1	1.2e-13	93.62	RNA-binding protein 48-like [Momordica charantia]	[more]
XP_038884635.1	2.6e-13	91.49	RNA-binding protein 48 isoform X1 [Benincasa hispida]	[more]
XP_004142975.1	2.6e-13	91.49	RNA-binding protein 48 isoform X2 [Cucumis sativus] >KGN62296.1 hypothetical pro...	[more]
XP_008444344.1	2.6e-13	75.00	PREDICTED: RNA-binding protein 48 isoform X2 [Cucumis melo] >XP_008444345.1 PRED...	[more]
XP_011649485.1	2.6e-13	91.49	RNA-binding protein 48 isoform X1 [Cucumis sativus]	[more]

BLAST of Spg025684 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg025684 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRX6	5.7e-14	93.62	RNA-binding protein 48 OS=Momordica charantia OX=3673 GN=LOC111005197 PE=3 SV=1	[more]
A0A1S3BAX9	1.3e-13	75.00	RNA-binding protein 48 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487697 PE=4 S...	[more]
A0A5A7V5K4	1.3e-13	75.00	RNA-binding protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold5...	[more]
A0A0A0LQL2	1.3e-13	91.49	RNA-binding protein 48 OS=Cucumis sativus OX=3659 GN=Csa_2G348830 PE=3 SV=1	[more]
A0A1S3BA34	1.3e-13	75.00	RNA-binding protein 48 OS=Cucumis melo OX=3656 GN=LOC103487697 PE=3 SV=1	[more]

BLAST of Spg025684 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27300.1	6.7e-07	49.15	pentatricopeptide (PPR) repeat-containing protein	[more]
AT5G27300.2	6.7e-07	49.15	pentatricopeptide (PPR) repeat-containing protein	[more]
AT2G27790.1	2.2e-05	41.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G27790.2	2.2e-05	41.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..71
None	No IPR available	PANTHER	PTHR20957:SF3	SUBFAMILY NOT NAMED	coord: 24..71
IPR039599	RNA-binding protein 48	PANTHER	PTHR20957	UNCHARACTERIZED	coord: 24..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg025684.1	Spg025684.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0003723	RNA binding