Spg017605 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg017605
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold9: 33401568 .. 33402406 (-)
RNA-Seq ExpressionSpg017605
SyntenySpg017605
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCCGACCAGGAAAAATCAAGCTCCGACCTCAAGCGGCCAGACACACCAGCCAACAAGAAGTACGTCGAGAACGACGGTGTATCAAGGTTGGTCACATGGGGTGGAGTCTTCGATTTCGCTTGTTTACTTGTATCTTTTACGTTCAAGAGGAGCAAGAAGATCAAAACTCCTGACAGGAGTCGAGATGATGTTTCAGATCTCGACGCCGGTGGTTCGAGAGAAAGCATCGACTACACCGATGAAGCTCGGCAAGTGGAAGGACTGCAACTTCTTCTTCCGTCTTCATCAACAACTGATCTCATCGGTCGTTCATGGTTAGAACTGAGTTTCATATTTTCGTTTCTTATGAAATATGTTTGATTCCCTTTTCATACTTTTTGGTGTTGGAAGAAATGTATTAGATAATTAATCTTCTCGTCTCTATTTTATTTAATTAATAATTTTTTTAGTTCAACCCATATGCGTGGGGAGATTTAAACTTTAATTACTTTTTTGTACCAATTATATTATTTAGGATTTTTCTAAAAAAATTATGATCCTTTTATAAATCAATAAATAGCCGTTGGTTAGAGCACATCATAGCTGGTTTGATTCCTACCTTATCATTGTTGAACTAAAAAAATTCATTATATTGGTACTAATGATTCATTTCTATTGTTACTTGTGTGCGATTGTTTTGTAGCTACACAATCTCAGAAATGTTGGTGAAATATGCTTCAATAGAAGACTCCAACTCAGACGAAAATCGAACTCTAACGACGAAACCCTTCTCAGAAACAAATGACGACGAAAATACTGTGGTTATTATTTATGAAGAAGAGTACCCAGATTAA

mRNA sequence

ATGTCGTCCGACCAGGAAAAATCAAGCTCCGACCTCAAGCGGCCAGACACACCAGCCAACAAGAAGTACGTCGAGAACGACGGTGTATCAAGGTTGGTCACATGGGGTGGAGTCTTCGATTTCGCTTGTTTACTTGTATCTTTTACGTTCAAGAGGAGCAAGAAGATCAAAACTCCTGACAGGAGTCGAGATGATGTTTCAGATCTCGACGCCGGTGGTTCGAGAGAAAGCATCGACTACACCGATGAAGCTCGGCAAGTGGAAGGACTGCAACTTCTTCTTCCGTCTTCATCAACAACTGATCTCATCGGTCGTTCATGCTACACAATCTCAGAAATGTTGGTGAAATATGCTTCAATAGAAGACTCCAACTCAGACGAAAATCGAACTCTAACGACGAAACCCTTCTCAGAAACAAATGACGACGAAAATACTGTGGTTATTATTTATGAAGAAGAGTACCCAGATTAA

Coding sequence (CDS)

ATGTCGTCCGACCAGGAAAAATCAAGCTCCGACCTCAAGCGGCCAGACACACCAGCCAACAAGAAGTACGTCGAGAACGACGGTGTATCAAGGTTGGTCACATGGGGTGGAGTCTTCGATTTCGCTTGTTTACTTGTATCTTTTACGTTCAAGAGGAGCAAGAAGATCAAAACTCCTGACAGGAGTCGAGATGATGTTTCAGATCTCGACGCCGGTGGTTCGAGAGAAAGCATCGACTACACCGATGAAGCTCGGCAAGTGGAAGGACTGCAACTTCTTCTTCCGTCTTCATCAACAACTGATCTCATCGGTCGTTCATGCTACACAATCTCAGAAATGTTGGTGAAATATGCTTCAATAGAAGACTCCAACTCAGACGAAAATCGAACTCTAACGACGAAACCCTTCTCAGAAACAAATGACGACGAAAATACTGTGGTTATTATTTATGAAGAAGAGTACCCAGATTAA

Protein sequence

MSSDQEKSSSDLKRPDTPANKKYVENDGVSRLVTWGGVFDFACLLVSFTFKRSKKIKTPDRSRDDVSDLDAGGSRESIDYTDEARQVEGLQLLLPSSSTTDLIGRSCYTISEMLVKYASIEDSNSDENRTLTTKPFSETNDDENTVVIIYEEEYPD
Homology
BLAST of Spg017605 vs. NCBI nr
Match: XP_038899634.1 (uncharacterized G-patch domain protein DDB_G0278987-like [Benincasa hispida])

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-28
Identity = 93/164 (56.71%), Postives = 111/164 (67.68%), Query Frame = 0

Query: 1   MSSDQEKSSSDLKRPDTPANKKY-----VENDGVSRLVTWGGVFDFAC-LLVSFTFKRSK 60
           MSSDQEKSS   K P T  NKK+     +ENDGV R+  WGG F FAC L+++ TFKRSK
Sbjct: 1   MSSDQEKSSFHPKIPAT--NKKHIITRIIENDGVPRMAAWGGAFAFACSLVLASTFKRSK 60

Query: 61  KIKTPDR-SRDDVSDLDAGGSRESIDYTDEARQVEGLQLLLPSSSTTDLIGRSCYTISEM 120
           KI +P R S+D  SDLD G         D+AR++EGLQLLL SSS TD+I RSC+T S M
Sbjct: 61  KIISPKRPSQDGDSDLDVGDD-------DKARRMEGLQLLLQSSS-TDIINRSCHTTSNM 120

Query: 121 LVKYASIEDSNSDENRTLTTKPFSETNDDENTVVIIYEE-EYPD 157
            VKY SIEDS  +ENR L T+   E   +EN VV+IYEE EYP+
Sbjct: 121 SVKYTSIEDS-KEENRPLMTEHILEKKKEENIVVVIYEEGEYPN 153

BLAST of Spg017605 vs. NCBI nr
Match: XP_031744420.1 (putative uncharacterized protein DDB_G0281733 [Cucumis sativus] >KAE8646347.1 hypothetical protein Csa_016596 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 7.0e-27
Identity = 84/155 (54.19%), Postives = 106/155 (68.39%), Query Frame = 0

Query: 7   KSSSDLKRPDTPANKK-----YVENDGVSRLVTWGGVFDFACLLVSFTFKRSKKIKTPDR 66
           KSS  L+RPD PANKK      VEN GV RLV WGG F F CLL++ TFK+SKK  +P  
Sbjct: 8   KSSFHLERPDKPANKKNVELGTVENTGVLRLVMWGGAFVFGCLLIASTFKKSKKSISPKT 67

Query: 67  SRDDVSDLDA-GGSRESI--DYTDEARQVEGLQLLLPSSSTTDLIGRSCYTISEMLVKYA 126
            R+ VS+LD  GG +ES   D  D+AR++EGL+L+L  SS+TD+I   C+T S+M     
Sbjct: 68  CREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLIL--SSSTDIISHPCHTSSKMSTN-- 127

Query: 127 SIEDSNSDENRTLTTKPFSETNDDENTVVIIYEEE 154
           SIEDS  DEN TLTT+P  E  +++N V+IIYEEE
Sbjct: 128 SIEDS-VDENLTLTTEPILEKKEEDNIVIIIYEEE 157

BLAST of Spg017605 vs. NCBI nr
Match: XP_008451548.1 (PREDICTED: uncharacterized protein LOC103492795 [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-23
Identity = 83/160 (51.88%), Postives = 104/160 (65.00%), Query Frame = 0

Query: 1   MSSDQEKSSSDLKRPDTPANKK-----YVENDGVSRLVTWGGVFDFACLLVSFTFKRSKK 60
           M  D EKSS  L+RP+ P NKK      VEN+GV RLV WGG F F CLL++ TFK+SKK
Sbjct: 5   MPPDHEKSSFHLERPNKPTNKKNVELGTVENNGVLRLVMWGGAFVFGCLLIASTFKKSKK 64

Query: 61  IKT-PDRSRDDVSDLDAGGSRESIDYTDEARQVEGLQLLLPSSSTTDLIGRSCYTISEML 120
           I T P RSR+  SDLD       +   D+A+++EGL+L+L  SS+TD+I   C+T S+ML
Sbjct: 65  ITTSPKRSREGDSDLD-------VIADDKAQEMEGLRLVL--SSSTDIISHLCHTSSKML 124

Query: 121 VKYASIEDSNSDENRTLTTKPFSETND-DENTVVIIYEEE 154
               SIEDS   EN  +TT+   E  D +EN VVIIYEEE
Sbjct: 125 TN--SIEDSEY-ENLPITTESILEKKDQEENIVVIIYEEE 152

BLAST of Spg017605 vs. NCBI nr
Match: XP_022991241.1 (uncharacterized protein LOC111487956 [Cucurbita maxima])

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-22
Identity = 73/135 (54.07%), Postives = 85/135 (62.96%), Query Frame = 0

Query: 21  KKYVENDGVSRLVTW-GGVFDFACLLVSFTFKRSKKIKT-PDRSRDDVSDLDAGGSRESI 80
           K  + +D +SR VTW GGVF FACLLV  TFK SKKI T P   RDD S+LD     ES 
Sbjct: 7   KLSLRSDKLSRWVTWGGGVFVFACLLVVSTFKMSKKIITSPKTGRDDDSNLDVDSFGEST 66

Query: 81  DYTDEARQVEGLQLLLPSSSTTDLIGRSCYTISEMLVKYASIEDSNSDENRTLTTKPFSE 140
              DE  + E  +     SS+TDLI  SCY  S+MLVKY+ +EDS  DE +TLTTK   E
Sbjct: 67  RCVDEETRQEDERQWFRQSSSTDLISHSCYPTSQMLVKYSLLEDSVIDETQTLTTKSIPE 126

Query: 141 TNDDENTVVIIYEEE 154
            ND+EN VV  YEEE
Sbjct: 127 KNDEENIVVNNYEEE 141

BLAST of Spg017605 vs. NCBI nr
Match: XP_022953717.1 (uncharacterized protein LOC111456164 [Cucurbita moschata])

HSP 1 Score: 115.2 bits (287), Expect = 5.2e-22
Identity = 73/136 (53.68%), Postives = 89/136 (65.44%), Query Frame = 0

Query: 21  KKYVENDGVSRLVTW-GGVFDFACLLVSFTFKRSKKIKTPDRS-RDDVSDLDAGGSRESI 80
           K  + +D +SR VTW GG F F CLL   TFK SKKI TP ++ +DD S+L+  G RES 
Sbjct: 10  KLSLSSDSLSRWVTWGGGAFVFGCLLAISTFKMSKKIITPSKTGQDDDSNLNVDGFREST 69

Query: 81  DYTDE-ARQVEGLQLLLPSSSTTDLIGRSCYTISEMLVKYASIEDSNSDENRTLTTKPFS 140
              DE  RQ + LQ    SSS TDLI  SC+T S+MLVKY+ +EDS  DE +TLTTK   
Sbjct: 70  RCVDEGTRQKDELQPFRQSSS-TDLISHSCHTTSQMLVKYSPLEDSVIDETQTLTTKSIP 129

Query: 141 ETNDDENTVVIIYEEE 154
           + ND+EN VV  YEEE
Sbjct: 130 KKNDEENVVVNNYEEE 144

BLAST of Spg017605 vs. ExPASy TrEMBL
Match: A0A0A0K656 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398200 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.4e-27
Identity = 84/155 (54.19%), Postives = 106/155 (68.39%), Query Frame = 0

Query: 7   KSSSDLKRPDTPANKK-----YVENDGVSRLVTWGGVFDFACLLVSFTFKRSKKIKTPDR 66
           KSS  L+RPD PANKK      VEN GV RLV WGG F F CLL++ TFK+SKK  +P  
Sbjct: 8   KSSFHLERPDKPANKKNVELGTVENTGVLRLVMWGGAFVFGCLLIASTFKKSKKSISPKT 67

Query: 67  SRDDVSDLDA-GGSRESI--DYTDEARQVEGLQLLLPSSSTTDLIGRSCYTISEMLVKYA 126
            R+ VS+LD  GG +ES   D  D+AR++EGL+L+L  SS+TD+I   C+T S+M     
Sbjct: 68  CREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLIL--SSSTDIISHPCHTSSKMSTN-- 127

Query: 127 SIEDSNSDENRTLTTKPFSETNDDENTVVIIYEEE 154
           SIEDS  DEN TLTT+P  E  +++N V+IIYEEE
Sbjct: 128 SIEDS-VDENLTLTTEPILEKKEEDNIVIIIYEEE 157

BLAST of Spg017605 vs. ExPASy TrEMBL
Match: A0A1S3BRP4 (uncharacterized protein LOC103492795 OS=Cucumis melo OX=3656 GN=LOC103492795 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 6.0e-24
Identity = 83/160 (51.88%), Postives = 104/160 (65.00%), Query Frame = 0

Query: 1   MSSDQEKSSSDLKRPDTPANKK-----YVENDGVSRLVTWGGVFDFACLLVSFTFKRSKK 60
           M  D EKSS  L+RP+ P NKK      VEN+GV RLV WGG F F CLL++ TFK+SKK
Sbjct: 5   MPPDHEKSSFHLERPNKPTNKKNVELGTVENNGVLRLVMWGGAFVFGCLLIASTFKKSKK 64

Query: 61  IKT-PDRSRDDVSDLDAGGSRESIDYTDEARQVEGLQLLLPSSSTTDLIGRSCYTISEML 120
           I T P RSR+  SDLD       +   D+A+++EGL+L+L  SS+TD+I   C+T S+ML
Sbjct: 65  ITTSPKRSREGDSDLD-------VIADDKAQEMEGLRLVL--SSSTDIISHLCHTSSKML 124

Query: 121 VKYASIEDSNSDENRTLTTKPFSETND-DENTVVIIYEEE 154
               SIEDS   EN  +TT+   E  D +EN VVIIYEEE
Sbjct: 125 TN--SIEDSEY-ENLPITTESILEKKDQEENIVVIIYEEE 152

BLAST of Spg017605 vs. ExPASy TrEMBL
Match: A0A6J1JQ73 (uncharacterized protein LOC111487956 OS=Cucurbita maxima OX=3661 GN=LOC111487956 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 6.7e-23
Identity = 73/135 (54.07%), Postives = 85/135 (62.96%), Query Frame = 0

Query: 21  KKYVENDGVSRLVTW-GGVFDFACLLVSFTFKRSKKIKT-PDRSRDDVSDLDAGGSRESI 80
           K  + +D +SR VTW GGVF FACLLV  TFK SKKI T P   RDD S+LD     ES 
Sbjct: 7   KLSLRSDKLSRWVTWGGGVFVFACLLVVSTFKMSKKIITSPKTGRDDDSNLDVDSFGEST 66

Query: 81  DYTDEARQVEGLQLLLPSSSTTDLIGRSCYTISEMLVKYASIEDSNSDENRTLTTKPFSE 140
              DE  + E  +     SS+TDLI  SCY  S+MLVKY+ +EDS  DE +TLTTK   E
Sbjct: 67  RCVDEETRQEDERQWFRQSSSTDLISHSCYPTSQMLVKYSLLEDSVIDETQTLTTKSIPE 126

Query: 141 TNDDENTVVIIYEEE 154
            ND+EN VV  YEEE
Sbjct: 127 KNDEENIVVNNYEEE 141

BLAST of Spg017605 vs. ExPASy TrEMBL
Match: A0A6J1GP08 (uncharacterized protein LOC111456164 OS=Cucurbita moschata OX=3662 GN=LOC111456164 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.5e-22
Identity = 73/136 (53.68%), Postives = 89/136 (65.44%), Query Frame = 0

Query: 21  KKYVENDGVSRLVTW-GGVFDFACLLVSFTFKRSKKIKTPDRS-RDDVSDLDAGGSRESI 80
           K  + +D +SR VTW GG F F CLL   TFK SKKI TP ++ +DD S+L+  G RES 
Sbjct: 10  KLSLSSDSLSRWVTWGGGAFVFGCLLAISTFKMSKKIITPSKTGQDDDSNLNVDGFREST 69

Query: 81  DYTDE-ARQVEGLQLLLPSSSTTDLIGRSCYTISEMLVKYASIEDSNSDENRTLTTKPFS 140
              DE  RQ + LQ    SSS TDLI  SC+T S+MLVKY+ +EDS  DE +TLTTK   
Sbjct: 70  RCVDEGTRQKDELQPFRQSSS-TDLISHSCHTTSQMLVKYSPLEDSVIDETQTLTTKSIP 129

Query: 141 ETNDDENTVVIIYEEE 154
           + ND+EN VV  YEEE
Sbjct: 130 KKNDEENVVVNNYEEE 144

BLAST of Spg017605 vs. ExPASy TrEMBL
Match: A0A5A7VKM4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00810 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.7e-16
Identity = 59/113 (52.21%), Postives = 74/113 (65.49%), Query Frame = 0

Query: 1   MSSDQEKSSSDLKRPDTPANKK-----YVENDGVSRLVTWGGVFDFACLLVSFTFKRSKK 60
           M  D EKSS  L+RP+ P NKK      VEN+GV RLV WGG F F CLL++ TFK+SKK
Sbjct: 5   MPPDHEKSSFHLERPNKPTNKKDVELGTVENNGVLRLVMWGGAFVFGCLLIASTFKKSKK 64

Query: 61  IKT-PDRSRDDVSDLDAGGSRESIDYTDEARQVEGLQLLLPSSSTTDLIGRSC 108
           I T P RSR+  SDLD       +   D+A+++EGL+LLL  SS+TD+I   C
Sbjct: 65  ITTSPKRSREGDSDLD-------VIADDKAQEMEGLRLLL--SSSTDIISHLC 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038899634.11.3e-2856.71uncharacterized G-patch domain protein DDB_G0278987-like [Benincasa hispida][more]
XP_031744420.17.0e-2754.19putative uncharacterized protein DDB_G0281733 [Cucumis sativus] >KAE8646347.1 hy... [more]
XP_008451548.11.2e-2351.88PREDICTED: uncharacterized protein LOC103492795 [Cucumis melo][more]
XP_022991241.11.4e-2254.07uncharacterized protein LOC111487956 [Cucurbita maxima][more]
XP_022953717.15.2e-2253.68uncharacterized protein LOC111456164 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K6563.4e-2754.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398200 PE=4 SV=1[more]
A0A1S3BRP46.0e-2451.88uncharacterized protein LOC103492795 OS=Cucumis melo OX=3656 GN=LOC103492795 PE=... [more]
A0A6J1JQ736.7e-2354.07uncharacterized protein LOC111487956 OS=Cucurbita maxima OX=3661 GN=LOC111487956... [more]
A0A6J1GP082.5e-2253.68uncharacterized protein LOC111456164 OS=Cucurbita moschata OX=3662 GN=LOC1114561... [more]
A0A5A7VKM42.7e-1652.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg017605.1Spg017605.1mRNA