Spg014811 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg014811
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA-directed RNA polymerases II and IV subunit 5A-like
Location	scaffold3: 38517663 .. 38520278 (+)
RNA-Seq Expression	Spg014811
Synteny	Spg014811

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCTGTCAGAGGAGGAAATCACCAGGCTTTTCAGAATTCGAAAAACTGTGTTGCAAATGCTAAAAGACCGAAGCTATTTTGTTGGAGACTTTGAGATTGACATGTCAAGAGAGCAATTTAAGCATAAATATGGTGAAAACATGAAAAGAGAAGATATTGTTATCAATAAAGCCAGGAGAAATGATAGCTCTGATCAGGTATTGTCTCAGACAAGGGAATATATTTGATTAATATTTCTCATTGTTATTAAAGTTCAGTAACAGGAGCTACAAGTTTCTCATTAATTCCCCTATTTGTTTCCCTCCTCTTACAGTAACTCTTTTCTGTATAGATATACGTTTTCTTTCCAGAAGAACAGAAGGTTGGGGTCAAGACAATGAAAACGTATACCAATCGCATGAAATCAGAGAATGTTTTTAGAGCCATATTGGTCGTTCAACAAAATTTGACCCCTTTCGCTCGTACATGTATAAGTGAAATATCTTCCAAATTCCATTTGGAAGTTTTCCAGGTGAAAATATTTCTTCAAAATACTTCGAGTATTTGTATGCTTTATACTTAGTTTGAGAAAAACTTAAACACCAGTTGAAGTAAATTAGATTCATCATTGACCCTCCTACTCTGGCAACTAGAAATTATGTTATGCTCTTTTCTTTATTTCTTGTTCTGCAATATGAGAATGAAAAATATGGGGTTTGCTGGATTCTCTGCTCGAAGAATAATAGAATTGACCGAGGCTGTTGTTCAATTGTTCCTCTGGCTTGGTTTCTATATTCTTGCTAAGGCTTTTCTTAGTTCACTTTAATATGTAACCTTTTTATTCTTTTTCCTGTCTTCATTTGTTGATGCAGGAAGCAGAGTTGCTAGTTAATATCAAAGATCACGTTCTTGTTCCCGAGCACCAGTTACTTAACAATGAAGAGAAAAAGACACTATTGGAGAGATATACTGTGAAAGAAACACAGGTTAGCATTAGTTCTTCAGAAAATATAACATTGTGAAACTGCATCTTAAGATCTATATTCAAATGTGATCGATAGACCCGAACCAACAATTTTATTTAGCAACAAGGAACAATGGAGATTTGAGAGCTCCCAGCTCTCCCAAATTCTCTACAGAAAATGCACAAAAAAAGAAAAATACCCCCTACTCACCAACGTTTCTCCCTATAATAGATTCACCCCTTATGTGGCCCCACACTACCTTCACACCTGTCCCTGTTCTCACACGCTTACGTTTATAAACCTTTGTGATCGGGAGACTATCGGTGATATGCTCATGCTTTCCCGATATCACTTTGGTTCTCCTGTCTGTAGCAACAAAATAGGCATAAGATGAGTCCATCATCGGACTCCTCGAACCTTAACTCGACTATTGACTAATGACTCGATTTCTTCATTGCCTACTATGTTCAAATTGCTCAATCCTATTTACTGGAATTTTGCTGCCTCGGATTCCAGTAAATTACATAGCATGCCGTGACTTGCAAACCATATTTTAGTAGGTTGTCTTGTGCTCCATTAAGTTTTCTTAGCAACAAAGAATTCCTGATAATGTTTTATTTATCGAATTTGCCCTATTTACCACTTCTGCAGATTATTTTTAGGTTGCCTTTTTGCTTTTTAGTAATCGTGTTATTGGGCCCGTACTCGTTGTGTTCATGTCGATTCCCCCTAACTTTTAAGGAGAAGCTTCAACCCAAGATTAACGTCAAAAGGTTTTAAGTTAGGTTAAAAATCACTTTGGATCCTTGAACTTTCATGAAAGTCACGATTTAGTCTCTAAACTTTAATTTGTAACAATTTAGTACTCTCAAATCTGTAACTAGTTAGTTCCTGAGCTTTAGAACAATTTAGTCTCTCTATCTTAAAATTTGTAACAATCTAATCCCTACCGCGAAAATTTCCATCATAACTGAGAGTCAGCTCTAAAGTTTGAACCTAGAATCTTGGAGGGTATTTCCAAACATGCTAAGATCTTAGAGCATGGGGACATCCCTTGGGGACCAATAACAATGCAGACTGTACTGAGTCATTTGACGGGTCTTACTGTCTCGTCTTACGGTTGATCTATTGATGTGGAATGTGTTTGCATTTCTGTTGCACAATGAATGAGAATCTTATATGATTTTGCATATTTTGTTTTAGCTACCTCGCATACAGGTGACCGACCCGGTTGCAAGATATTACGGGCTAAAGCGTGGACAAGTTGTGAAGATCATCAGACCAAGTGAGACTGCAGGAAGATACGTAACTTACAGATATGTTGTCTGAGTATACTCATTATTTTCCAACTGAAGATGTGACATATGAATACACATTGAAAGTTATTTTTTTCGAGTCGTAATGAATGAAGGTTGTGATATCTAAGGTGAGTTGTAGAAGAATTTGGGAACTTCTGTATTTGGGATTTAGATGGGACCTTCATAGCATTGTGTACACTAGATTTTTATGAACATTATATTACCTTGGAAGATTAAATTAGTTCTATTGAAGGGTACTTTTTGTGAATTGTCCCTATGGAGTGTGCATTTTAGAAGTAGCCATCTTTGAAACACAATAATTTAAATATAGTTTGAGTAGTAAACTTGCTGTTATGGCACAATCTATTAT

mRNA sequence

ATGGTCCTGTCAGAGGAGGAAATCACCAGGCTTTTCAGAATTCGAAAAACTGTGTTGCAAATGCTAAAAGACCGAAGCTATTTTGTTGGAGACTTTGAGATTGACATGTCAAGAGAGCAATTTAAGCATAAATATGGTGAAAACATGAAAAGAGAAGATATTGTTATCAATAAAGCCAGGAGAAATGATAGCTCTGATCAGATATACGTTTTCTTTCCAGAAGAACAGAAGGTTGGGGTCAAGACAATGAAAACGTATACCAATCGCATGAAATCAGAGAATGTTTTTAGAGCCATATTGGTCGTTCAACAAAATTTGACCCCTTTCGCTCGTACATGTATAAGTGAAATATCTTCCAAATTCCATTTGGAAGTTTTCCAGGAAGCAGAGTTGCTAGTTAATATCAAAGATCACGTTCTTGTTCCCGAGCACCAGTTACTTAACAATGAAGAGAAAAAGACACTATTGGAGAGATATACTGTGAAAGAAACACAGCTACCTCGCATACAGGTGACCGACCCGGTTGCAAGATATTACGGGCTAAAGCGTGGACAAGTTGTGAAGATCATCAGACCAAGTGAGACTGCAGGAAGATACGTAACTTACAGATATGTTGTCTGA

Coding sequence (CDS)

ATGGTCCTGTCAGAGGAGGAAATCACCAGGCTTTTCAGAATTCGAAAAACTGTGTTGCAAATGCTAAAAGACCGAAGCTATTTTGTTGGAGACTTTGAGATTGACATGTCAAGAGAGCAATTTAAGCATAAATATGGTGAAAACATGAAAAGAGAAGATATTGTTATCAATAAAGCCAGGAGAAATGATAGCTCTGATCAGATATACGTTTTCTTTCCAGAAGAACAGAAGGTTGGGGTCAAGACAATGAAAACGTATACCAATCGCATGAAATCAGAGAATGTTTTTAGAGCCATATTGGTCGTTCAACAAAATTTGACCCCTTTCGCTCGTACATGTATAAGTGAAATATCTTCCAAATTCCATTTGGAAGTTTTCCAGGAAGCAGAGTTGCTAGTTAATATCAAAGATCACGTTCTTGTTCCCGAGCACCAGTTACTTAACAATGAAGAGAAAAAGACACTATTGGAGAGATATACTGTGAAAGAAACACAGCTACCTCGCATACAGGTGACCGACCCGGTTGCAAGATATTACGGGCTAAAGCGTGGACAAGTTGTGAAGATCATCAGACCAAGTGAGACTGCAGGAAGATACGTAACTTACAGATATGTTGTCTGA

Protein sequence

MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKARRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV

Homology

[Close]

BLAST of Spg014811 vs. NCBI nr
Match: XP_022143609.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Momordica charantia])

HSP 1 Score: 396.7 bits (1018), Expect = 1.2e-106
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60
           MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60

Query: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120
           RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVNIKDHVLVPEHQLL NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Spg014811 vs. NCBI nr
Match: XP_022991826.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023547519.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 390.6 bits (1002), Expect = 8.5e-105
Identity = 200/206 (97.09%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60
           MVLSEEEITRLFRIRKTVLQMLKDR YFVGDFEIDMSREQFKHKYGE+MKREDIVINKA+
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 60

Query: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120
           RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMK+ENVFRAILVVQQNLTPFARTCISEISSK
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVN+KDHVLVPEHQLL NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Spg014811 vs. NCBI nr
Match: XP_022953770.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata])

HSP 1 Score: 390.2 bits (1001), Expect = 1.1e-104
Identity = 199/206 (96.60%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60
           MVLSEEEITRLFRIRKTVLQMLKDR YFVGDFEIDMSREQFKHKYGE+MKRED+VINKA+
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDVVINKAK 60

Query: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120
           RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMK+ENVFRAILVVQQNLTPFARTCISEISSK
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVN+KDHVLVPEHQLL NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Spg014811 vs. NCBI nr
Match: XP_022959553.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_022959554.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_022959555.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_023004795.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023004796.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023004797.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023513561.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo] >XP_023513563.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384.0 bits (985), Expect = 8.0e-103
Identity = 195/206 (94.66%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60
           MVL+EEEITRLFR+RKTVLQMLKDR YFVGDFE+DMSREQFK+KYGE+MKREDIVINKA+
Sbjct: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60

Query: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120
           RNDSSDQIY+FFPEE KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEIS+K
Sbjct: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVNIKDHVLVPEHQLL+NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Spg014811 vs. NCBI nr
Match: XP_022142704.1 (DNA-directed RNA polymerases II and IV subunit 5A [Momordica charantia] >XP_022142705.1 DNA-directed RNA polymerases II and IV subunit 5A [Momordica charantia])

HSP 1 Score: 376.7 bits (966), Expect = 1.3e-100
Identity = 190/206 (92.23%), Postives = 201/206 (97.57%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60
           MVL++EEITRLFRIRKTVLQMLKDR YFVGDFEI MSREQF++KYGE+MKRED+VINKA+
Sbjct: 1   MVLADEEITRLFRIRKTVLQMLKDRGYFVGDFEIGMSREQFRNKYGESMKREDLVINKAK 60

Query: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120
           RNDSSDQIY+FFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI EISSK
Sbjct: 61  RNDSSDQIYIFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIGEISSK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAEL+VNIKDHVL+PEHQLL  EEKKTLLERYTVKETQLPRIQVTDP+ARYYG
Sbjct: 121 FHLEVFQEAELMVNIKDHVLIPEHQLLTTEEKKTLLERYTVKETQLPRIQVTDPIARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Spg014811 vs. ExPASy Swiss-Prot
Match: O81098 (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.1e-91
Identity = 166/205 (80.98%), Postives = 192/205 (93.66%), Query Frame = 0


Query: 2   VLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKARR 61
           +L+EEE+ RL+RI+KT++QML+DR YF+ D E+ M+++QF  K+G+NMKRED+V  KA+R
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 62  NDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 121
           ND+SDQ+Y+FFP+E KVGVKTMK YTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120

Query: 122 HLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYGL 181
           HLEVFQEAE+LVNIK+HVLVPEHQ+L  EEKKTLLERYTVKETQLPRIQVTDP+ARY+GL
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180

Query: 182 KRGQVVKIIRPSETAGRYVTYRYVV 207
           KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 KRGQVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of Spg014811 vs. ExPASy Swiss-Prot
Match: Q80UW8 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10090 GN=Polr2e PE=1 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 9.9e-56
Identity = 109/206 (52.91%), Postives = 151/206 (73.30%), Query Frame = 0


Query: 5   EEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGE-----NMKREDIVINKA 64
           EEE  RL++IRKT++Q+  DR Y V   E+D + E+FK ++G+       +R D+ +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  RRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISS 124
             +D +DQ++VFFPEE KVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYY 184
           K+ LE F + ELL+NI +H LVPEH ++  EE   LL RY ++E+QLPRIQ  DPVARY+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYF 183

Query: 185 GLKRGQVVKIIRPSETAGRYVTYRYV 206
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Spg014811 vs. ExPASy Swiss-Prot
Match: B0BNE2 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus OX=10116 GN=Polr2e PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 9.9e-56
Identity = 109/206 (52.91%), Postives = 151/206 (73.30%), Query Frame = 0


Query: 5   EEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGE-----NMKREDIVINKA 64
           EEE  RL++IRKT++Q+  DR Y V   E+D + E+FK ++G+       +R D+ +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  RRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISS 124
             +D +DQ++VFFPEE KVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYY 184
           K+ LE F + ELL+NI +H LVPEH ++  EE   LL RY ++E+QLPRIQ  DPVARY+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYF 183

Query: 185 GLKRGQVVKIIRPSETAGRYVTYRYV 206
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Spg014811 vs. ExPASy Swiss-Prot
Match: Q9N5K2 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans OX=6239 GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.2e-55
Identity = 115/211 (54.50%), Postives = 150/211 (71.09%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMK-----REDIV 60
           M   E E  RL+RIRKTVLQM+ DR Y V   E+D   E FK +YG+        R D+ 
Sbjct: 1   MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60

Query: 61  INKARRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIS 120
           I  A  +D +DQ++VFFPE+ K+G+KT+K    +M+ +N+ RAI+VVQ  +TP A+  I 
Sbjct: 61  ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120

Query: 121 EISSKFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPV 180
           +++ K+ LE F EAEL+VNI +H LVPEH ++  EEK  LL RY +K++QLPRIQ  DPV
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPV 180

Query: 181 ARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 207
           ARY+GL+RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 181 ARYFGLRRGQVVKIIRPSETAGRYITYRLVV 211

[Close]

BLAST of Spg014811 vs. ExPASy Swiss-Prot
Match: Q5R587 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=9601 GN=POLR2E PE=2 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.9e-55
Identity = 108/206 (52.43%), Postives = 150/206 (72.82%), Query Frame = 0


Query: 5   EEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGE-----NMKREDIVINKA 64
           EEE  RL++IRKT++Q+  DR Y V   E+D + E+F+ ++G+       +R D+ +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  RRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISS 124
             +D +DQ++VFFPEE KVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYY 184
           K+ LE F + ELL+NI +H LVPEH ++  EE   LL RY ++E QLPRIQ  DPVARY+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF 183

Query: 185 GLKRGQVVKIIRPSETAGRYVTYRYV 206
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Spg014811 vs. ExPASy TrEMBL
Match: A0A6J1CPU1 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Momordica charantia OX=3673 GN=LOC111013465 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 5.7e-107
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60
           MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60

Query: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120
           RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVNIKDHVLVPEHQLL NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Spg014811 vs. ExPASy TrEMBL
Match: A0A6J1JRV4 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111488357 PE=3 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 4.1e-105
Identity = 200/206 (97.09%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60
           MVLSEEEITRLFRIRKTVLQMLKDR YFVGDFEIDMSREQFKHKYGE+MKREDIVINKA+
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 60

Query: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120
           RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMK+ENVFRAILVVQQNLTPFARTCISEISSK
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVN+KDHVLVPEHQLL NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Spg014811 vs. ExPASy TrEMBL
Match: A0A6J1GQK9 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111456196 PE=3 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 5.4e-105
Identity = 199/206 (96.60%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60
           MVLSEEEITRLFRIRKTVLQMLKDR YFVGDFEIDMSREQFKHKYGE+MKRED+VINKA+
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDVVINKAK 60

Query: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120
           RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMK+ENVFRAILVVQQNLTPFARTCISEISSK
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVN+KDHVLVPEHQLL NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Spg014811 vs. ExPASy TrEMBL
Match: A0A6J1KT45 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111497988 PE=3 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 3.9e-103
Identity = 195/206 (94.66%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60
           MVL+EEEITRLFR+RKTVLQMLKDR YFVGDFE+DMSREQFK+KYGE+MKREDIVINKA+
Sbjct: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60

Query: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120
           RNDSSDQIY+FFPEE KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEIS+K
Sbjct: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVNIKDHVLVPEHQLL+NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Spg014811 vs. ExPASy TrEMBL
Match: A0A6J1H699 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111460591 PE=3 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 3.9e-103
Identity = 195/206 (94.66%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60
           MVL+EEEITRLFR+RKTVLQMLKDR YFVGDFE+DMSREQFK+KYGE+MKREDIVINKA+
Sbjct: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60

Query: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120
           RNDSSDQIY+FFPEE KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEIS+K
Sbjct: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVNIKDHVLVPEHQLL+NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Spg014811 vs. TAIR 10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 337.4 bits (864), Expect = 8.0e-93
Identity = 166/205 (80.98%), Postives = 192/205 (93.66%), Query Frame = 0


Query: 2   VLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKARR 61
           +L+EEE+ RL+RI+KT++QML+DR YF+ D E+ M+++QF  K+G+NMKRED+V  KA+R
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 62  NDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 121
           ND+SDQ+Y+FFP+E KVGVKTMK YTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120

Query: 122 HLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYGL 181
           HLEVFQEAE+LVNIK+HVLVPEHQ+L  EEKKTLLERYTVKETQLPRIQVTDP+ARY+GL
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180

Query: 182 KRGQVVKIIRPSETAGRYVTYRYVV 207
           KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 KRGQVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of Spg014811 vs. TAIR 10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C )

HSP 1 Score: 177.6 bits (449), Expect = 1.1e-44
Identity = 94/206 (45.63%), Postives = 144/206 (69.90%), Query Frame = 0


Query: 5   EEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENM---KREDIVINKARR 64
           ++EITR+F++R+TVLQML+DR Y + + ++++ RE+F  ++ + M    +E + ++  + 
Sbjct: 5   DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64

Query: 65  NDSSDQIYVFFPEEQKVGVKTM-KTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 124
            + +D+IYVF+PE  KVGV  + K    +M+ + V R I+VV   +T  AR  +SE++  
Sbjct: 65  PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKM 124

Query: 125 FHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 184
             +EVF+EAEL+ NI +H LV ++ +L+++ KK LL  YTV++TQLPRI VTDP+ARYYG
Sbjct: 125 LTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYYG 184

Query: 185 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKI R   T+  Y TYR+ V
Sbjct: 185 LKRGQVVKIRRSDATSLDYYTYRFAV 210

[Close]

BLAST of Spg014811 vs. TAIR 10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D )

HSP 1 Score: 136.0 bits (341), Expect = 3.5e-32
Identity = 79/203 (38.92%), Postives = 127/203 (62.56%), Query Frame = 0


Query: 4   SEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKARRND 63
           S  E  + +  R+T ++ML+DR Y V D +I++S +QF+  YGE+   + + I+   R D
Sbjct: 17  SSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFD 76

Query: 64  SSDQIYVFFPEEQKVGVKTMKTY-TNRMKSENVFRAILVVQQNLTPFARTCISEISSKFH 123
           SS +I V F     V V  M+    + +  EN+   ILV+Q ++T  A   +   S  F 
Sbjct: 77  SSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFS--FK 136

Query: 124 LEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLK 183
           +E+F+  +LLVN+  HVL P+HQ+LN++EK++LL++++++E QLPR+   DP+ RYYGL+
Sbjct: 137 VELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLE 196

Query: 184 RGQVVKIIRPSETAGRYVTYRYV 206
            GQV+K+    E +  +VTYR V
Sbjct: 197 TGQVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of Spg014811 vs. TAIR 10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 132.5 bits (332), Expect = 3.9e-31
Identity = 80/204 (39.22%), Postives = 122/204 (59.80%), Query Frame = 0


Query: 3   LSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKARRN 62
           LS EE  R +  R+  LQML+DR Y V D +I++S   F+  YGE    + + I+   R+
Sbjct: 20  LSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRS 79

Query: 63  DSSDQIYVFFPEEQKVGVKTMKT-YTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 122
           DS+ ++ + F     V V  +++   + +  E +   ILV+Q ++T  A   I   S  F
Sbjct: 80  DSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFS--F 139

Query: 123 HLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYGL 182
            +E+FQ  +LLVNI  H L P+HQ+LN+EEK TLL++++++E QLPRI   D + RYYGL
Sbjct: 140 KVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGL 199

Query: 183 KRGQVVKIIRPSETAGRYVTYRYV 206
           ++GQVVK+    E    +V +R V
Sbjct: 200 EKGQVVKVNYRGELTESHVAFRCV 221

[Close]

BLAST of Spg014811 vs. TAIR 10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E )

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-25
Identity = 68/201 (33.83%), Postives = 114/201 (56.72%), Query Frame = 0


Query: 7   EITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKARRNDSSD 66
           E  R +  R T  +ML+DR Y V + E+ ++  +F+  +GE  + E + I    R+D   
Sbjct: 35  ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94

Query: 67  QIYVFFPEEQKVGVKTMKTYTNRMKSE-NVFRAILVVQQNLTPFARTCISEISSKFHLEV 126
           +I V F   + + VK+++    ++ +   +   ILV+Q  +  FA+  ++  +  F +E 
Sbjct: 95  KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALT--TFPFTVET 154

Query: 127 FQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQ 186
           F   +LLVNI  H+  P+ ++LN EEK+ LL ++ +++ QLP +Q  D   RYYGLK+ Q
Sbjct: 155 FPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQ 214

Query: 187 VVKIIRPSETAGRYVTYRYVV 207
           VVKI    E  G +VTYR ++
Sbjct: 215 VVKITYSKEPVGDFVTYRCII 233

The following BLAST results are available for this feature:

BLAST of Spg014811 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143609.1	1.2e-106	99.51	DNA-directed RNA polymerases II and IV subunit 5A-like [Momordica charantia]	[more]
XP_022991826.1	8.5e-105	97.09	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_02...	[more]
XP_022953770.1	1.1e-104	96.60	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata]	[more]
XP_022959553.1	8.0e-103	94.66	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_...	[more]
XP_022142704.1	1.3e-100	92.23	DNA-directed RNA polymerases II and IV subunit 5A [Momordica charantia] >XP_0221...	[more]

BLAST of Spg014811 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81098	1.1e-91	80.98	DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=370...	[more]
Q80UW8	9.9e-56	52.91	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10...	[more]
B0BNE2	9.9e-56	52.91	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus ...	[more]
Q9N5K2	2.2e-55	54.50	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis ele...	[more]
Q5R587	2.9e-55	52.43	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=96...	[more]

BLAST of Spg014811 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CPU1	5.7e-107	99.51	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Momordica charantia OX...	[more]
A0A6J1JRV4	4.1e-105	97.09	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1GQK9	5.4e-105	96.60	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=...	[more]
A0A6J1KT45	3.9e-103	94.66	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1H699	3.9e-103	94.66	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=...	[more]

BLAST of Spg014811 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22320.1	8.0e-93	80.98	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT5G57980.1	1.1e-44	45.63	RNA polymerase II fifth largest subunit, C	[more]
AT2G41340.1	3.5e-32	38.92	RNA polymerase II fifth largest subunit, D	[more]
AT3G57080.1	3.9e-31	39.22	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT3G54490.1	1.1e-25	33.83	RNA polymerase II fifth largest subunit, E	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035913	RPB5-like RNA polymerase subunit superfamily	GENE3D	3.90.940.20		coord: 131..206 e-value: 1.1E-34 score: 119.9
IPR035913	RPB5-like RNA polymerase subunit superfamily	SUPERFAMILY	55287	RPB5-like RNA polymerase subunit	coord: 131..206
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 5..90 e-value: 1.1E-31 score: 109.3
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	GENE3D	3.40.1340.10		coord: 3..130 e-value: 3.1E-47 score: 162.1
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	SUPERFAMILY	53036	Eukaryotic RPB5 N-terminal domain	coord: 5..134
IPR014381	DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus	PIRSF	PIRSF000747	RPB5	coord: 1..206 e-value: 1.4E-90 score: 300.2
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 133..205 e-value: 1.0E-34 score: 118.2
None	No IPR available	PANTHER	PTHR10535:SF17	DNA-DIRECTED RNA POLYMERASES II AND IV SUBUNIT 5A-LIKE	coord: 1..206
IPR039531	DNA-directed RNA polymerase subunit Rpb5-like	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 1..206
IPR020608	RNA polymerase, subunit H/Rpb5, conserved site	PROSITE	PS01110	RNA_POL_H_23KD	coord: 138..151
IPR020609	Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit	HAMAP	MF_00025	RNApol_RpoH_RPB5	coord: 133..206 score: 22.768368

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg014811.1	Spg014811.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity