Spg012291 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg012291
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	50S ribosomal protein L7/L12
Location	scaffold1: 5727963 .. 5730208 (-)
RNA-Seq Expression	Spg012291
Synteny	Spg012291

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAAAATCGAATTTCAGCATTGCTCTAGGAACCAAAACACAGTAGCCCACCGTGCTTCTCGCTTCGCAGCGAGGTTTTTTGTTTCGCGGAACCAGAGACTCTTCCCCTCGCGGGAAGAAGACAGTATTTTTTGGATATCTGATTTCCCAAGGTGGTTTAATGCCCTTCTTTATGAGGGTAGTTGTACTGAATTTTTGCCTCTTTAATGAATTTCTGTCTCTTTCAAAATAATAATAATAATAATAGGAAGGTTTTTTTTAGTTCAACAATATGTATGGGTGAATTATGCTCAAGTTGGGTCAAACGGGGAGGTTGAAATTTGAACCTACAACATTTAAATGAATCAAAATATATTGATGAATTGACTTTTTTTTTTTTTTGGTATAATGAATTGACCTGTTGAATACTAATATGAAATAGTAATGATTAAATTACAGGTTTAATCCTTTAAACTTAAGGTTTATGTCTATTTAATCTCTGGACTTTAAAAAATGTCTAGTAGTTCTTTAAACTTTCATTTGTGTTCAATAGTTTTGAACTTTAAAAATTGTTTAATAGTTCCTTAAACTTTTAATTTTGTATCCTAAAGCCCCTAAATTTTCAATTTTGTGTCAATAGGTCATTAATCTATTCAACAATTTTTAAAATTCACGAACCTACTAAACATGGAATTGAAAGTTTAGGTCTCTATTAGATATAAAATTCAATTTATATCAATTAATTTAAAAAATTTTGAATACGTAAGGATCTATTAGACATAAAATTGAAAGTTCAAGGACCTATCAAACATAAAATTGAAAATTCAGTGATCTATTAGATACCTTTTAAAGTTTAGGGACCTTTTAAACACAAACCTTCAAAGTTTAAGGACTAAATTTATAATTTAACTAATAATAAAAATAAGTTTGTAGTTTGATATTATTTAAAGGATGATAAACATAAATTATTTACTTTAACGAGATAGTGAAAAGACTATCAAAAATTACTTATATTTTTAGGAAACAGAAAGTATGAGAAAAAAAAGAAAAAAGAAGAAAAAAAAAACAATTTCTCTAAACTTAATCAATTTTCACCTGTAACTTTCAATTTCATCGTATTGCATCTTAAATTAAGTGTTGCAATCTTAACTTTGAACTTAAAATGTGTTTCAATTTTATCCCTCTAATAAGTTCTCACTTCACAAATATCTTTATAAAATTTTTCTTTTATGCGTTTAATTAATAATAAACCCTATTGTAAGATATGAAATTATTAAATTATAGAGAGAAATGAATATTAGAGCTAGATTCTTTGATTGAATTTTGAGAAATGGTTAATTTGTACTTTCTTATAAACTTATTTTTATAAAAAGCTTTTTTGCTATTGCAAAATGAGATGGACCGTTCGTTCACAGAGACAGCCCAATATTTTATGGACCTAACTGATTCCAAAGCCCAACTAAAAGAAGCCCGCCCCGCGAATTTACCATCTGCTTCATTCTCAACGGTAGGGTTTATGCCTCTCCCCGGAATCTGAACGACGGCCAACAATCTATATTCCAGTTCCAAACTCATTGACCATGAACGCACAGAGTTCATTGTCTCACTGTTCTTGCTGACTGAACAACATTCACGATTTACCATATATTTGAAAGATGAGACATTTGCGAATTATTTCCCCTCATTTCTCGAGGCTTCGCAGAACCTTCGCTCAAAGCCCTTGCTCTGATTCTCCGTCTACTCGTAACTTAAATCTTTTTGGATTGGAGAGTTTCGCATCTTCATCATCGCCGAACCATCGGAATTATACCACTGCTTCACCAGAATCAAGGCCAGCCCCATCAGAGAGAGTTACGGCCATTGTGGATGAGATCTCCGGTCTCACGCTACTCGAGGTTGCGGACCTTACGGAGGTTCTACGAGAAAAATTGGATGTGAAGGATATGCCGGTAATGGCAGTGATGATGCCTGGTATGGGGTTCGGCGGCTTGCACGGTGGCGGCAAGGGTGGTCCTGGGGCGAAAGGCGCTGAGGAGAAGAAGGCAGAGAAGACGGCGTTTGATGTGAAGCTTGAAGCTTTTGACGCTGCGTCGAAGATCAAGGTCATTAAGGAAGTGCGAACGTTTACGAATTTGGGGTTGAAGGAAGCTAAGGATTTGGTGGAGAAGGCGCCAACGCTTCTGAAGAAGGGAGTGACGAAAGAGGAAGCTGATACGATTATTGCCAAGATGAAGGAGATTGGCGCCAAAGTTTCAATGGAGTGA

mRNA sequence

ATGGGCAAAATCGAATTTCAGCATTGCTCTAGGAACCAAAACACAGTAGCCCACCGTGCTTCTCGCTTCGCAGCGAGAACCTTCGCTCAAAGCCCTTGCTCTGATTCTCCGTCTACTCGTAACTTAAATCTTTTTGGATTGGAGAGTTTCGCATCTTCATCATCGCCGAACCATCGGAATTATACCACTGCTTCACCAGAATCAAGGCCAGCCCCATCAGAGAGAGTTACGGCCATTGTGGATGAGATCTCCGGTCTCACGCTACTCGAGGTTGCGGACCTTACGGAGGTTCTACGAGAAAAATTGGATGTGAAGGATATGCCGGTAATGGCAGTGATGATGCCTGGTATGGGGTTCGGCGGCTTGCACGGTGGCGGCAAGGGTGGTCCTGGGGCGAAAGGCGCTGAGGAGAAGAAGGCAGAGAAGACGGCGTTTGATGTGAAGCTTGAAGCTTTTGACGCTGCGTCGAAGATCAAGGTCATTAAGGAAGTGCGAACGTTTACGAATTTGGGGTTGAAGGAAGCTAAGGATTTGGTGGAGAAGGCGCCAACGCTTCTGAAGAAGGGAGTGACGAAAGAGGAAGCTGATACGATTATTGCCAAGATGAAGGAGATTGGCGCCAAAGTTTCAATGGAGTGA

Coding sequence (CDS)

ATGGGCAAAATCGAATTTCAGCATTGCTCTAGGAACCAAAACACAGTAGCCCACCGTGCTTCTCGCTTCGCAGCGAGAACCTTCGCTCAAAGCCCTTGCTCTGATTCTCCGTCTACTCGTAACTTAAATCTTTTTGGATTGGAGAGTTTCGCATCTTCATCATCGCCGAACCATCGGAATTATACCACTGCTTCACCAGAATCAAGGCCAGCCCCATCAGAGAGAGTTACGGCCATTGTGGATGAGATCTCCGGTCTCACGCTACTCGAGGTTGCGGACCTTACGGAGGTTCTACGAGAAAAATTGGATGTGAAGGATATGCCGGTAATGGCAGTGATGATGCCTGGTATGGGGTTCGGCGGCTTGCACGGTGGCGGCAAGGGTGGTCCTGGGGCGAAAGGCGCTGAGGAGAAGAAGGCAGAGAAGACGGCGTTTGATGTGAAGCTTGAAGCTTTTGACGCTGCGTCGAAGATCAAGGTCATTAAGGAAGTGCGAACGTTTACGAATTTGGGGTTGAAGGAAGCTAAGGATTTGGTGGAGAAGGCGCCAACGCTTCTGAAGAAGGGAGTGACGAAAGAGGAAGCTGATACGATTATTGCCAAGATGAAGGAGATTGGCGCCAAAGTTTCAATGGAGTGA

Protein sequence

MGKIEFQHCSRNQNTVAHRASRFAARTFAQSPCSDSPSTRNLNLFGLESFASSSSPNHRNYTTASPESRPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLHGGGKGGPGAKGAEEKKAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKEIGAKVSME

Homology

[Close]

BLAST of Spg012291 vs. NCBI nr
Match: XP_038881033.1 (50S ribosomal protein L7/L12 [Benincasa hispida])

HSP 1 Score: 317.8 bits (813), Expect = 7.2e-83
Identity = 170/187 (90.91%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 26  RTFAQSPCSDSPSTRNLNLFGLESFASSSSPNHRNYTTASPESRPAPSERVTAIVDEISG 85
           RTFAQ+PCSDSPST N +L GLES+ASSSS NHRN+TTASPESRPAPSE+V+AIVDEISG
Sbjct: 16  RTFAQNPCSDSPSTLNFDLLGLESYASSSSLNHRNFTTASPESRPAPSEKVSAIVDEISG 75

Query: 86  LTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLHGGGKGGPGAKGAEEKKAEKTAF 145
           LTLLEVADLTEVLR+KLDVK+MPVMAVMMPGMGFGGL G GKGGPGAKG EEKKAEKTAF
Sbjct: 76  LTLLEVADLTEVLRQKLDVKEMPVMAVMMPGMGFGGLQGAGKGGPGAKGGEEKKAEKTAF 135

Query: 146 DVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKEI 205
           DVKLEAFDAASKIK+IKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKE+
Sbjct: 136 DVKLEAFDAASKIKIIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKEV 195

Query: 206 GAKVSME 213
           GAKVSME
Sbjct: 196 GAKVSME 202

[Close]

BLAST of Spg012291 vs. NCBI nr
Match: XP_022132430.1 (uncharacterized protein LOC111005287 [Momordica charantia])

HSP 1 Score: 314.7 bits (805), Expect = 6.1e-82
Identity = 172/187 (91.98%), Postives = 176/187 (94.12%), Query Frame = 0


Query: 26  RTFAQSPCSDSPSTRNLNLFGLESFASSSSPNHRNYTTASPESRPAPSERVTAIVDEISG 85
           RTFAQ+PC DS ST +LNL GL S ASSS  NHRNYTTASPESRPAPSERV+AIVDEISG
Sbjct: 16  RTFAQTPCCDSSSTHSLNLLGLGSLASSSLLNHRNYTTASPESRPAPSERVSAIVDEISG 75

Query: 86  LTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLHGGGKGGPGAKGAEEKKAEKTAF 145
           LTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGL G GKGGPGAKG EEKKAEKTAF
Sbjct: 76  LTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAGKGGPGAKGGEEKKAEKTAF 135

Query: 146 DVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKEI 205
           DVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKE+
Sbjct: 136 DVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKEV 195

Query: 206 GAKVSME 213
           GAKVSME
Sbjct: 196 GAKVSME 202

[Close]

BLAST of Spg012291 vs. NCBI nr
Match: XP_004149984.1 (uncharacterized protein LOC101204400 [Cucumis sativus] >KGN48876.1 hypothetical protein Csa_002925 [Cucumis sativus])

HSP 1 Score: 306.6 bits (784), Expect = 1.7e-79
Identity = 168/202 (83.17%), Postives = 182/202 (90.10%), Query Frame = 0


Query: 11  RNQNTVAHRASRFAARTFAQSPCSDSPSTRNLNLFGLESFASSSSPNHRNYTTASPESRP 70
           RN   ++   SR   +TFAQ+P SDSPSTR++N  GLE+FAS SS NHRNYTTASPESRP
Sbjct: 2   RNLRILSPHFSRI-RKTFAQNPSSDSPSTRHINFPGLETFASPSSVNHRNYTTASPESRP 61

Query: 71  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLHGGGKGGP 130
           APSERV+AIVDEISGLTLLEVADLTEVLREKLDVK+MPVM +MMPGMGFGG  G GKGGP
Sbjct: 62  APSERVSAIVDEISGLTLLEVADLTEVLREKLDVKEMPVMTMMMPGMGFGGFRGAGKGGP 121

Query: 131 GAKGAEEKKAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGV 190
           GAKG EEKK EKTAFDVKL+AFDAASKIK+IKEVRTFTNLGLKEAKDLVEKAPTLLKKGV
Sbjct: 122 GAKGVEEKKEEKTAFDVKLDAFDAASKIKIIKEVRTFTNLGLKEAKDLVEKAPTLLKKGV 181

Query: 191 TKEEADTIIAKMKEIGAKVSME 213
           TKEEA+TIIAKMKE+GAKVSME
Sbjct: 182 TKEEAETIIAKMKEVGAKVSME 202

[Close]

BLAST of Spg012291 vs. NCBI nr
Match: XP_008440773.1 (PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo])

HSP 1 Score: 305.8 bits (782), Expect = 2.8e-79
Identity = 165/187 (88.24%), Postives = 177/187 (94.65%), Query Frame = 0


Query: 26  RTFAQSPCSDSPSTRNLNLFGLESFASSSSPNHRNYTTASPESRPAPSERVTAIVDEISG 85
           RTFAQ+P S SPSTR++NL GLE+FASSSS NHRNYTTASPESRPAPSERV+AIVDEISG
Sbjct: 16  RTFAQNPSSVSPSTRHINLPGLETFASSSSVNHRNYTTASPESRPAPSERVSAIVDEISG 75

Query: 86  LTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLHGGGKGGPGAKGAEEKKAEKTAF 145
           LTLLEVADLTEVLREKLDVK+MPVM +MMPG GFGG+ G GKGGPGAKG EEKK EKTAF
Sbjct: 76  LTLLEVADLTEVLREKLDVKEMPVMTIMMPGTGFGGVQGAGKGGPGAKGGEEKKEEKTAF 135

Query: 146 DVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKEI 205
           DVKLEAFDAASKIK+IKEVRTFT+LGLKEAKDLVEKAPTLLKKGVTKEEA+TIIAKMKE+
Sbjct: 136 DVKLEAFDAASKIKIIKEVRTFTSLGLKEAKDLVEKAPTLLKKGVTKEEAETIIAKMKEV 195

Query: 206 GAKVSME 213
           GAKVSME
Sbjct: 196 GAKVSME 202

[Close]

BLAST of Spg012291 vs. NCBI nr
Match: KAA0025711.1 (50S ribosomal protein L7/L12 [Cucumis melo var. makuwa] >TYK12586.1 50S ribosomal protein L7/L12 [Cucumis melo var. makuwa])

HSP 1 Score: 305.8 bits (782), Expect = 2.8e-79
Identity = 165/187 (88.24%), Postives = 177/187 (94.65%), Query Frame = 0


Query: 26  RTFAQSPCSDSPSTRNLNLFGLESFASSSSPNHRNYTTASPESRPAPSERVTAIVDEISG 85
           RTFAQ+P S SPSTR++NL GLE+FASSSS NHRNYTTASPESRPAPSERV+AIVDEISG
Sbjct: 16  RTFAQNPSSVSPSTRHINLPGLETFASSSSVNHRNYTTASPESRPAPSERVSAIVDEISG 75

Query: 86  LTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLHGGGKGGPGAKGAEEKKAEKTAF 145
           LTLLEVADLTEVLREKLDVK+MPVM +MMPG GFGG+ G GKGGPGAKG EEKK EKTAF
Sbjct: 76  LTLLEVADLTEVLREKLDVKEMPVMTIMMPGTGFGGVQGAGKGGPGAKGGEEKKEEKTAF 135

Query: 146 DVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKEI 205
           DVKLEAFDAASKIK+IKEVRTFT+LGLKEAKDLVEKAPTLLKKGVTKEEA+TIIAKMKE+
Sbjct: 136 DVKLEAFDAASKIKIIKEVRTFTSLGLKEAKDLVEKAPTLLKKGVTKEEAETIIAKMKEV 195

Query: 206 GAKVSME 213
           GAKVSME
Sbjct: 196 GAKVSME 202

[Close]

BLAST of Spg012291 vs. ExPASy Swiss-Prot
Match: Q9USJ9 (54S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl12 PE=3 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 7.6e-19
Identity = 66/177 (37.29%), Postives = 104/177 (58.76%), Query Frame = 0


Query: 36  SPSTRNLNLFGLESFASSSSPNHRNYTTASPESRPAPSERVTAIVDEISGLTLLEVADLT 95
           S  TRNL         + S  N R++  A+  S    + ++  +VD+IS L+LLE ++L 
Sbjct: 6   SRQTRNLRALSSSKNWARSLVNTRSFRAAA--SVQNNNAQIGEMVDKISSLSLLETSELV 65

Query: 96  EVLREKLDVKDMPVMAVMMPGMGFGGLHGGGKGGPGAKGAEEKKAEKTAFDVKLEAFDAA 155
           + L+EKL++ ++  MA + P +               K  EEKK EKT +++KLE+FDA 
Sbjct: 66  KQLKEKLNIAEIAPMAAVAPAV-------ASAAPSEEKAPEEKKEEKTTWNLKLESFDAG 125

Query: 156 SKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKEIGAKVSME 213
           SK KVIKEV++   L L +AK  VE AP +LK+ + KE+A+ I +K++++  KV +E
Sbjct: 126 SKAKVIKEVKSLLGLSLVDAKKFVESAPKVLKENILKEDAEAIKSKLEKLSCKVVLE 173

[Close]

BLAST of Spg012291 vs. ExPASy Swiss-Prot
Match: A9BDG4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=93059 GN=rplL PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.9e-18
Identity = 58/140 (41.43%), Postives = 84/140 (60.00%), Query Frame = 0


Query: 73  SERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLHGGGKGGPGA 132
           S++   I+D +  L+LLE ++L + + E   V       V+M   G GG         GA
Sbjct: 2   SKKTDEILDSLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAGG---------GA 61

Query: 133 KGAEEKKAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTK 192
             A E   EKT FDV LE+FDAA+KIKV+KEVR  T LGL EAK +VE AP  +K+G +K
Sbjct: 62  SAAGEAAEEKTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMVEAAPKTIKEGASK 121

Query: 193 EEADTIIAKMKEIGAKVSME 213
           E+A+ +   ++ +G KV+++
Sbjct: 122 EDAEALKKAIEAVGGKVTLK 132

[Close]

BLAST of Spg012291 vs. ExPASy Swiss-Prot
Match: B0CAD2 (50S ribosomal protein L7/L12 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplL PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-17
Identity = 56/134 (41.79%), Postives = 77/134 (57.46%), Query Frame = 0


Query: 79  IVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLHGGGKGGPGAKGAEEK 138
           I++++  LTLLE ADL + + E   V   P   VMM   G GG  GG           E+
Sbjct: 7   ILEKLKSLTLLEAADLVKQIEETFGVSAAPAAGVMMAAPGAGGAAGG-----------EE 66

Query: 139 KAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTI 198
             EKT FDV LE   +  KI V+K VRT T LGLKEAK++VE  P  +K+GV+KE+A+  
Sbjct: 67  AEEKTEFDVVLEEVPSDKKIAVLKVVRTLTGLGLKEAKEMVESTPKSIKEGVSKEDAEEA 126

Query: 199 IAKMKEIGAKVSME 213
              +++ G K S++
Sbjct: 127 KKSLEDAGGKASLK 129

[Close]

BLAST of Spg012291 vs. ExPASy Swiss-Prot
Match: Q6N4R8 (50S ribosomal protein L7/L12 OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) OX=258594 GN=rplL PE=1 SV=3)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-17
Identity = 63/134 (47.01%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 79  IVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLHGGGKGGPGAKGAEEK 138
           IVD++S LT+LE A+L ++L EK  V     +AV                 PGA GA   
Sbjct: 7   IVDDLSSLTVLEAAELAKLLEEKWGVSAAAAVAV--------------AAAPGAGGAAAP 66

Query: 139 KAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTI 198
             EKT F V L A     KI+VIKEVR  T LGLKEAKDLVE AP  LK+GV KEEA+ +
Sbjct: 67  AEEKTEFTVVL-ASAGDKKIEVIKEVRAITGLGLKEAKDLVEGAPKPLKEGVNKEEAEKV 125

Query: 199 IAKMKEIGAKVSME 213
            A++++ GAKV ++
Sbjct: 127 KAQLEKAGAKVELK 125

[Close]

BLAST of Spg012291 vs. ExPASy Swiss-Prot
Match: B3QC01 (50S ribosomal protein L7/L12 OS=Rhodopseudomonas palustris (strain TIE-1) OX=395960 GN=rplL PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-17
Identity = 63/134 (47.01%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 79  IVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLHGGGKGGPGAKGAEEK 138
           IVD++S LT+LE A+L ++L EK  V     +AV                 PGA GA   
Sbjct: 7   IVDDLSSLTVLEAAELAKLLEEKWGVSAAAAVAV--------------AAAPGAGGAAAP 66

Query: 139 KAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTI 198
             EKT F V L A     KI+VIKEVR  T LGLKEAKDLVE AP  LK+GV KEEA+ +
Sbjct: 67  AEEKTEFTVVL-ASAGDKKIEVIKEVRAITGLGLKEAKDLVEGAPKPLKEGVNKEEAEKV 125

Query: 199 IAKMKEIGAKVSME 213
            A++++ GAKV ++
Sbjct: 127 KAQLEKAGAKVELK 125

[Close]

BLAST of Spg012291 vs. ExPASy TrEMBL
Match: A0A6J1BSG1 (uncharacterized protein LOC111005287 OS=Momordica charantia OX=3673 GN=LOC111005287 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 3.0e-82
Identity = 172/187 (91.98%), Postives = 176/187 (94.12%), Query Frame = 0


Query: 26  RTFAQSPCSDSPSTRNLNLFGLESFASSSSPNHRNYTTASPESRPAPSERVTAIVDEISG 85
           RTFAQ+PC DS ST +LNL GL S ASSS  NHRNYTTASPESRPAPSERV+AIVDEISG
Sbjct: 16  RTFAQTPCCDSSSTHSLNLLGLGSLASSSLLNHRNYTTASPESRPAPSERVSAIVDEISG 75

Query: 86  LTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLHGGGKGGPGAKGAEEKKAEKTAF 145
           LTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGL G GKGGPGAKG EEKKAEKTAF
Sbjct: 76  LTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAGKGGPGAKGGEEKKAEKTAF 135

Query: 146 DVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKEI 205
           DVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKE+
Sbjct: 136 DVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKEV 195

Query: 206 GAKVSME 213
           GAKVSME
Sbjct: 196 GAKVSME 202

[Close]

BLAST of Spg012291 vs. ExPASy TrEMBL
Match: A0A0A0KMA8 (50S ribosomal protein L7/L12 OS=Cucumis sativus OX=3659 GN=Csa_6G504570 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 8.0e-80
Identity = 168/202 (83.17%), Postives = 182/202 (90.10%), Query Frame = 0


Query: 11  RNQNTVAHRASRFAARTFAQSPCSDSPSTRNLNLFGLESFASSSSPNHRNYTTASPESRP 70
           RN   ++   SR   +TFAQ+P SDSPSTR++N  GLE+FAS SS NHRNYTTASPESRP
Sbjct: 2   RNLRILSPHFSRI-RKTFAQNPSSDSPSTRHINFPGLETFASPSSVNHRNYTTASPESRP 61

Query: 71  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLHGGGKGGP 130
           APSERV+AIVDEISGLTLLEVADLTEVLREKLDVK+MPVM +MMPGMGFGG  G GKGGP
Sbjct: 62  APSERVSAIVDEISGLTLLEVADLTEVLREKLDVKEMPVMTMMMPGMGFGGFRGAGKGGP 121

Query: 131 GAKGAEEKKAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGV 190
           GAKG EEKK EKTAFDVKL+AFDAASKIK+IKEVRTFTNLGLKEAKDLVEKAPTLLKKGV
Sbjct: 122 GAKGVEEKKEEKTAFDVKLDAFDAASKIKIIKEVRTFTNLGLKEAKDLVEKAPTLLKKGV 181

Query: 191 TKEEADTIIAKMKEIGAKVSME 213
           TKEEA+TIIAKMKE+GAKVSME
Sbjct: 182 TKEEAETIIAKMKEVGAKVSME 202

[Close]

BLAST of Spg012291 vs. ExPASy TrEMBL
Match: A0A5A7SN88 (50S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001680 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.4e-79
Identity = 165/187 (88.24%), Postives = 177/187 (94.65%), Query Frame = 0


Query: 26  RTFAQSPCSDSPSTRNLNLFGLESFASSSSPNHRNYTTASPESRPAPSERVTAIVDEISG 85
           RTFAQ+P S SPSTR++NL GLE+FASSSS NHRNYTTASPESRPAPSERV+AIVDEISG
Sbjct: 16  RTFAQNPSSVSPSTRHINLPGLETFASSSSVNHRNYTTASPESRPAPSERVSAIVDEISG 75

Query: 86  LTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLHGGGKGGPGAKGAEEKKAEKTAF 145
           LTLLEVADLTEVLREKLDVK+MPVM +MMPG GFGG+ G GKGGPGAKG EEKK EKTAF
Sbjct: 76  LTLLEVADLTEVLREKLDVKEMPVMTIMMPGTGFGGVQGAGKGGPGAKGGEEKKEEKTAF 135

Query: 146 DVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKEI 205
           DVKLEAFDAASKIK+IKEVRTFT+LGLKEAKDLVEKAPTLLKKGVTKEEA+TIIAKMKE+
Sbjct: 136 DVKLEAFDAASKIKIIKEVRTFTSLGLKEAKDLVEKAPTLLKKGVTKEEAETIIAKMKEV 195

Query: 206 GAKVSME 213
           GAKVSME
Sbjct: 196 GAKVSME 202

[Close]

BLAST of Spg012291 vs. ExPASy TrEMBL
Match: A0A1S3B1Y6 (50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103485090 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.4e-79
Identity = 165/187 (88.24%), Postives = 177/187 (94.65%), Query Frame = 0


Query: 26  RTFAQSPCSDSPSTRNLNLFGLESFASSSSPNHRNYTTASPESRPAPSERVTAIVDEISG 85
           RTFAQ+P S SPSTR++NL GLE+FASSSS NHRNYTTASPESRPAPSERV+AIVDEISG
Sbjct: 16  RTFAQNPSSVSPSTRHINLPGLETFASSSSVNHRNYTTASPESRPAPSERVSAIVDEISG 75

Query: 86  LTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLHGGGKGGPGAKGAEEKKAEKTAF 145
           LTLLEVADLTEVLREKLDVK+MPVM +MMPG GFGG+ G GKGGPGAKG EEKK EKTAF
Sbjct: 76  LTLLEVADLTEVLREKLDVKEMPVMTIMMPGTGFGGVQGAGKGGPGAKGGEEKKEEKTAF 135

Query: 146 DVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKEI 205
           DVKLEAFDAASKIK+IKEVRTFT+LGLKEAKDLVEKAPTLLKKGVTKEEA+TIIAKMKE+
Sbjct: 136 DVKLEAFDAASKIKIIKEVRTFTSLGLKEAKDLVEKAPTLLKKGVTKEEAETIIAKMKEV 195

Query: 206 GAKVSME 213
           GAKVSME
Sbjct: 196 GAKVSME 202

[Close]

BLAST of Spg012291 vs. ExPASy TrEMBL
Match: A0A6J1KN90 (uncharacterized protein LOC111497194 OS=Cucurbita maxima OX=3661 GN=LOC111497194 PE=3 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.8e-79
Identity = 172/202 (85.15%), Postives = 179/202 (88.61%), Query Frame = 0


Query: 11  RNQNTVAHRASRFAARTFAQSPCSDSPSTRNLNLFGLESFASSSSPNHRNYTTASPESRP 70
           R+  +++   SR   RTFAQ+  SDSPST NLNL GLE   SSS  NHRNYT ASPES+P
Sbjct: 2   RHLRSISSHLSR-VRRTFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTIASPESKP 61

Query: 71  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLHGGGKGGP 130
           APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGL   GKGG 
Sbjct: 62  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQNTGKGGS 121

Query: 131 GAKGAEEKKAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGV 190
           GAKG EEKKAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGV
Sbjct: 122 GAKGGEEKKAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGV 181

Query: 191 TKEEADTIIAKMKEIGAKVSME 213
           TKEEADTIIAKMKE+GAKVSME
Sbjct: 182 TKEEADTIIAKMKEVGAKVSME 202

[Close]

BLAST of Spg012291 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 163.7 bits (413), Expect = 1.6e-40
Identity = 98/160 (61.25%), Postives = 117/160 (73.12%), Query Frame = 0


Query: 53  SSSPNHRNYTTASPESRPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAV 112
           SSS       + S  S    SE V+ IV+E+S LTLLE  DLTE+LR+KL++ ++PVMA 
Sbjct: 22  SSSVQLFTIQSRSYSSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAA 81

Query: 113 MMPGMGFGGLHGGGKGGPGAKGAEEKKAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGL 172
           MMPGM   G   G     G +G E+KK  KTAFDV L+A+DA SKIKVIKEVRT T LGL
Sbjct: 82  MMPGMSLPG--SGASKSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGL 141

Query: 173 KEAKDLVEKAPTLLKKGVTKEEADTIIAKMKEIGAKVSME 213
           KEAKDLVEKAPTLLKKGV+KEEA+ II K+K +GAKV+ME
Sbjct: 142 KEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGAKVAME 179

[Close]

BLAST of Spg012291 vs. TAIR 10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 137.9 bits (346), Expect = 9.5e-33
Identity = 82/167 (49.10%), Postives = 115/167 (68.86%), Query Frame = 0


Query: 48  ESFASSSSPNHRNYTTASP-ESRPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKD 107
           E F     P   +  T  P E R  P++RV  +VDEIS LTLLE+++L  ++ +K  + +
Sbjct: 42  EEFDQRKLPTDYDPATFDPTEHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTE 101

Query: 108 MPVMAVMMPGMGFGGLHGGGKGGPGAKG-AEEKKAEKTAFDVKLEAFDAASKIKVIKEVR 167
           +P +AVM PG G G   GGG G     G +EE K EKT F++KLE+F+A++KIK+IKE+R
Sbjct: 102 LPTVAVMKPGAGGGVGVGGGGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELR 161

Query: 168 TFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKEIGAKVSME 213
           +FT+LGLKEAK LVEK P +LK G++KEE + I+ K+K +GAKV +E
Sbjct: 162 SFTDLGLKEAKALVEKTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208

[Close]

BLAST of Spg012291 vs. TAIR 10
Match: AT1G70190.2 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 137.9 bits (346), Expect = 9.5e-33
Identity = 82/167 (49.10%), Postives = 115/167 (68.86%), Query Frame = 0


Query: 48  ESFASSSSPNHRNYTTASP-ESRPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKD 107
           E F     P   +  T  P E R  P++RV  +VDEIS LTLLE+++L  ++ +K  + +
Sbjct: 42  EEFDQRKLPTDYDPATFDPTEHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTE 101

Query: 108 MPVMAVMMPGMGFGGLHGGGKGGPGAKG-AEEKKAEKTAFDVKLEAFDAASKIKVIKEVR 167
           +P +AVM PG G G   GGG G     G +EE K EKT F++KLE+F+A++KIK+IKE+R
Sbjct: 102 LPTVAVMKPGAGGGVGVGGGGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELR 161

Query: 168 TFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKEIGAKVSME 213
           +FT+LGLKEAK LVEK P +LK G++KEE + I+ K+K +GAKV +E
Sbjct: 162 SFTDLGLKEAKALVEKTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208

[Close]

BLAST of Spg012291 vs. TAIR 10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 109.4 bits (272), Expect = 3.6e-24
Identity = 72/144 (50.00%), Postives = 93/144 (64.58%), Query Frame = 0


Query: 69  RPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLHGGGKG 128
           RP PS ++  + + I+ L+  E   +   L E L +    +++         G+  G K 
Sbjct: 53  RPQPSSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMIS-------SDGI--GAKQ 112

Query: 129 GPGAKGAEEKKAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK 188
             GA   EEKK EKTAFDVKLE F+A+ KIKVIKEVRTFT+LGLKEAK+LVEK P +LK+
Sbjct: 113 DTGAGNVEEKK-EKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQ 172

Query: 189 GVTKEEADTIIAKMKEIGAKVSME 213
           GVTKEEA+ IIAK+K +G    ME
Sbjct: 173 GVTKEEANEIIAKIKAVGGIAVME 186

[Close]

BLAST of Spg012291 vs. TAIR 10
Match: AT3G06040.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 109.4 bits (272), Expect = 3.6e-24
Identity = 72/144 (50.00%), Postives = 93/144 (64.58%), Query Frame = 0


Query: 69  RPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLHGGGKG 128
           RP PS ++  + + I+ L+  E   +   L E L +    +++         G+  G K 
Sbjct: 53  RPQPSSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMIS-------SDGI--GAKQ 112

Query: 129 GPGAKGAEEKKAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK 188
             GA   EEKK EKTAFDVKLE F+A+ KIKVIKEVRTFT+LGLKEAK+LVEK P +LK+
Sbjct: 113 DTGAGNVEEKK-EKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQ 172

Query: 189 GVTKEEADTIIAKMKEIGAKVSME 213
           GVTKEEA+ IIAK+K +G    ME
Sbjct: 173 GVTKEEANEIIAKIKAVGGIAVME 186

The following BLAST results are available for this feature:

BLAST of Spg012291 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881033.1	7.2e-83	90.91	50S ribosomal protein L7/L12 [Benincasa hispida]	[more]
XP_022132430.1	6.1e-82	91.98	uncharacterized protein LOC111005287 [Momordica charantia]	[more]
XP_004149984.1	1.7e-79	83.17	uncharacterized protein LOC101204400 [Cucumis sativus] >KGN48876.1 hypothetical ...	[more]
XP_008440773.1	2.8e-79	88.24	PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo]	[more]
KAA0025711.1	2.8e-79	88.24	50S ribosomal protein L7/L12 [Cucumis melo var. makuwa] >TYK12586.1 50S ribosoma...	[more]

BLAST of Spg012291 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9USJ9	7.6e-19	37.29	54S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
A9BDG4	2.9e-18	41.43	50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=930...	[more]
B0CAD2	1.4e-17	41.79	50S ribosomal protein L7/L12 OS=Acaryochloris marina (strain MBIC 11017) OX=3297...	[more]
Q6N4R8	1.4e-17	47.01	50S ribosomal protein L7/L12 OS=Rhodopseudomonas palustris (strain ATCC BAA-98 /...	[more]
B3QC01	1.4e-17	47.01	50S ribosomal protein L7/L12 OS=Rhodopseudomonas palustris (strain TIE-1) OX=395...	[more]

BLAST of Spg012291 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BSG1	3.0e-82	91.98	uncharacterized protein LOC111005287 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A0A0KMA8	8.0e-80	83.17	50S ribosomal protein L7/L12 OS=Cucumis sativus OX=3659 GN=Csa_6G504570 PE=3 SV=...	[more]
A0A5A7SN88	1.4e-79	88.24	50S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3B1Y6	1.4e-79	88.24	50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103485090 PE=3 SV=1	[more]
A0A6J1KN90	1.8e-79	85.15	uncharacterized protein LOC111497194 OS=Cucurbita maxima OX=3661 GN=LOC111497194...	[more]

BLAST of Spg012291 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G36420.1	1.6e-40	61.25	Ribosomal protein L12 family protein	[more]
AT1G70190.1	9.5e-33	49.10	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]
AT1G70190.2	9.5e-33	49.10	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]
AT3G06040.1	3.6e-24	50.00	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT3G06040.2	3.6e-24	50.00	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 141..211 e-value: 3.9E-24 score: 86.5
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 141..211
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 145..211 e-value: 3.2E-24 score: 85.1
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	GENE3D	1.20.5.710	Single helix bin	coord: 75..140 e-value: 1.7E-7 score: 33.1
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 76..147
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 76..116 e-value: 1.2E-11 score: 44.2
IPR000206	Ribosomal protein L7/L12	TIGRFAM	TIGR00855	TIGR00855	coord: 77..211 e-value: 3.2E-25 score: 86.9
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 49..212
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 73..212 score: 18.646812
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 74..211 e-value: 1.47454E-46 score: 148.072
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg012291.1	Spg012291.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome