Spg010880 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg010880
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationscaffold10: 5186801 .. 5190050 (-)
RNA-Seq ExpressionSpg010880
SyntenySpg010880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATGGACCCAGATGGCAGAGCCAAATCAAGGCGGAATGGTCATCCAAGAAAATCCTTTATTTGGCTATTCTACTTCATCTTCTGAGCAGGCAAAGGAGACATCAGATCCTGACGTGATGTCTGTAATGATGGCTTACATAGGCACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAGGTCAACATGCTGATGAAGGCGGTTGAAGAGAGAGATTGTGAAATTGCCTCTCTAAAAAATCACATTGAAAGTCGTGATATCGCTGAATCAAGCCAAACATCCGCTGCAAAGAATAATGACAAAGGGAAGGCTGTCATGCAAGAAAACCAGCCTCAGCATTCCACTTCAATTGCTTCGCTGTCCGTTCAGCAACTCCAAGATATGATTATGAGCTCAATTAGAGCTCAATATGGTGGACCTACTCAAAATTCTCTTATGTATTCCAAACCATACACTAAGAGAATTGACAACTTGAGGATGCCTACCGGGTTTCAACCTCCAAAATTTCAACAACTTGATGGAAAGGGGAACCCTAAGCAGCATATTGCTCACTTTGTTGAGACATGCGAGAATGCTGGGACTCGTGGAGATCTCCTAGTTAAACAATTTGTCCGAACCTTAAAAGGAAATGCCTTTGATTGGTATACTGATTTAGAGCCAGAGATGATCGATAGTTGGGAACAATTCGAAAGAGAGTTCCTAAATCGCTTTTATAGCACAAGGCGAACTGTCAGCATGACAGAACTCACAAATACAAAACAACGGAAAGGTGAGCCTGTCATTGATTACATTAATCGTTGGAGAGCTCTGAGTCTTGATTGCAAAGACCGACTCACCGAATTATCTGCTGTGGAAATGTGTATGCAAGGAATGCACTGGGAACTTCTTTATATATTGCAGGGCATAAAACCCCGCACCTTTGAAGAATTAGCAACTCGCACTCATGACATGGAGCTAAGTATTACTACTAGAGGGAATAAGGAATTTCCAGTCCCCGATGTAAAGAAGGAGAAGAAAGAAATGAAGAGCACCGGGAAAACCTCGAAGGGTGCTACAAGAGAATCCATGGTCGTCAATACGACCCCTCTGAAGTTTACTTCTAACAAGAGAGAAAATAAAATAGAGAAGCGTCAAAATGAAGGCGAGAAACAGCGCTTGACTTTGAAAGAAAGACAAGAAAAAATCTATCCTTTTCCAGACACTGACATCCCAGATATGTTAGAACAACTGTTGGACAACAAACTTATTGAACTCCCTGAAAGCAAACGACCCGAAGAGAGGGGAAAAGTAAATGATCCCAACTACTGTAAATATCACCGAGTCGTCAGTCATCCAGTGGAGAAATGTTTTGTGTTAAAGGAGCTAATCTTGAAGTTAGCTCGAGAAAAGAAAATCGAGCTAGATCTTGATGAAGTAGCTCAGGCAAATCACGCTGCCATAGTAACTCATCCTAGTGTCCAGTCACCCATAAGTTTACTTTATGATCAGAGAGGAAGCTTAATCCAATTTGGCACCTTTGAACCTATTATCGTTTGGTCTCAACCAAAGGCCCCAGAAAATGACTTCCCAGAAAGGGCTCTCTACGATGAGGATATTCAAGAAAAGATTAAGCAAATTGAAGACAAAGATGGAGGTTGGACACTTGTAACCCGACGGAAGAACCGAAAGCAAAATTGGGTTCAAAAGGAATCTCGTTTGTTTCAAGAACGCAAAAGAAAAGGCAGACCTCGAAGGAAAAACGGGAAGAAGTATGTGAGAAGGCTCAAGCCTATCTTAGAGGGAAGTGAGGAGCATATCCAACCTCCACATTCGATAACGCTAAAAGAATTTTTCCCAAGAACTTTTCTTTCAGTAATCAATCAAACTGTTACATGTCACGTCGTTAATGTGACAGAAGATGATAATTCTACATCAACCACGTCAGAAGTAGTCACGAAACTGGAAGACCTACCATCCTTCAATATAGATGATTTACTGTCACTTCCTCAAGAGGCCAAAAATACTCTTATTGAGGTGTTAAAGGATTGTAAACCATCTACTTCTCAGACAAGATCTACTACTTGGGTCGAAGCCTCATAATAGGCCTTTGTTTGTCTCAGGCTACATCAGAGAGCAAAAAGTTAGCCGAATTCTCATTGATGATGGTTCTGCCGTTAACATAATGCCCAAGTCTACCATGAACCAACTTGGCATTCTGATGCAAGAATTATCAAATAGTAAGTTGGTAATTCAAGGATTTAACCAAGGCGGGCAACGTGCGATTGGCATGATTCGCCTAGAGCTCATTATTGGAGATTTAAAGGCCAACACCCTATTTCATGTTATAGACTCTAGGACCACCTACAAGTTGTTACTAGGTCGCCCCTGGATTCATGAAAATGGAGTAGTTACTTCCACGCTGCACCAATGCTTTAAATTCTATCAAGATGGTATCAAGAAGGTTGATGCTGATACCAACCCCTTTTCAGAGGCTGAGTCTCATTATGCAGATGCGAAGTTTTATATGAAGAATGACAGTGTAGGGGAAGCTATGCCGTTAGAAGTTCCTCTGATAAGAAGTAATGACAAATCAGAGCGACAGACAAGCACGGGAAAAGAGCTGAATGAAAAATCAAGTGCTTCTAATAATCAGGAAAGCAAGGTATCTCCTAGCCAAACAAAAGCTAAAGTGGCGATAAGTGAGAAGATACTATGTTCAAAAGAGAAGAAGACAAATGCTCCTGTCTTACGCTATGTTCCCTTATCTCGACGCAAGAAGGGTGATTCGCCATTTGCAAAATGCTCCAATAATTTAAGAGTTGGCGACATTGAAATTTTGAAAGAGAGTTTCATTGCACCTCTTACAAAGATATCTAAACAAGAGGTTAAAGACAAACAAATAGAAGCAACTCTGCCTGAAAGACGAACAGAAGAGGGTTTTGATCCTAAAGCATACAAACTCTTGGCAAAGGTAGGTTATGATTTCACAGCGCATACTGAGTTTAAAAGTTTACGGATCTTTGACCAAAGGCCTGAACTTTCCTCAACACAGAAGAAACTTCAAAAGGAGGGTCATGTTATACCCACCTCAAGAGCTGGCCTTGGATATAAATCCCCTGAGCCGGTTCGAATCACAAGGAAAGGGAAAGCGAAAGTTGCAGATACGCTTCATATTACAGTGGAAGAAATCGATGATTCCGAACAGGCTAAAGAAAACATAGATCATAGAACTTCTGCATTTGATCGCATTGGACCGTTTGTTACATGA

mRNA sequence

ATGATATGGACCCAGATGGCAGAGCCAAATCAAGGCGGAATGGTCATCCAAGAAAATCCTTTATTTGGCTATTCTACTTCATCTTCTGAGCAGGCAAAGGAGACATCAGATCCTGACGTGATGTCTGTAATGATGGCTTACATAGGCACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAGGTCAACATGCTGATGAAGGCGGCCCCAGAAAATGACTTCCCAGAAAGGGCTCTCTACGATGAGGATATTCAAGAAAAGATTAAGCAAATTGAAGACAAAGATGGAGGTTGGACACTTAAGAAACTTCAAAAGGAGGGTCATGTTATACCCACCTCAAGAGCTGGCCTTGGATATAAATCCCCTGAGCCGGTTCGAATCACAAGGAAAGGGAAAGCGAAAGTTGCAGATACGCTTCATATTACAGTGGAAGAAATCGATGATTCCGAACAGGCTAAAGAAAACATAGATCATAGAACTTCTGCATTTGATCGCATTGGACCGTTTGTTACATGA

Coding sequence (CDS)

ATGATATGGACCCAGATGGCAGAGCCAAATCAAGGCGGAATGGTCATCCAAGAAAATCCTTTATTTGGCTATTCTACTTCATCTTCTGAGCAGGCAAAGGAGACATCAGATCCTGACGTGATGTCTGTAATGATGGCTTACATAGGCACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAGGTCAACATGCTGATGAAGGCGGCCCCAGAAAATGACTTCCCAGAAAGGGCTCTCTACGATGAGGATATTCAAGAAAAGATTAAGCAAATTGAAGACAAAGATGGAGGTTGGACACTTAAGAAACTTCAAAAGGAGGGTCATGTTATACCCACCTCAAGAGCTGGCCTTGGATATAAATCCCCTGAGCCGGTTCGAATCACAAGGAAAGGGAAAGCGAAAGTTGCAGATACGCTTCATATTACAGTGGAAGAAATCGATGATTCCGAACAGGCTAAAGAAAACATAGATCATAGAACTTCTGCATTTGATCGCATTGGACCGTTTGTTACATGA

Protein sequence

MIWTQMAEPNQGGMVIQENPLFGYSTSSSEQAKETSDPDVMSVMMAYIGTGEERMAELERKVNMLMKAAPENDFPERALYDEDIQEKIKQIEDKDGGWTLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFVT
Homology
[Close]
BLAST of Spg010880 vs. NCBI nr
Match: TYK28162.1 (uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-16
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 0 

Query: 99  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDH 158
           T KKL +EGHVIP SR GLGYKSPEP+RITRKGK KV D+ HITV+E+D  E+ KE  + 
Sbjct: 266 TQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEE-KEGDNQ 325

Query: 159 RTSAFDRIGPFV 171
           RTS FDRI P V
Sbjct: 326 RTSTFDRISPHV 336

[Close]
BLAST of Spg010880 vs. NCBI nr
Match: KAA0054152.1 (uncharacterized protein E6C27_scaffold131G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-16
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 0 

Query: 99  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDH 158
           T KKL +EGH IP SR GLGYKSPEP+RITRKGK KV D+ HITV+E+D  E+ KE+   
Sbjct: 281 TQKKLLQEGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEE-KEDDSQ 340

Query: 159 RTSAFDRIGPFV 171
           RTSAFDRI P V
Sbjct: 341 RTSAFDRISPHV 351

[Close]
BLAST of Spg010880 vs. NCBI nr
Match: KAA0055957.1 (uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-16
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 0 

Query: 99  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDH 158
           T KKL +EGHVIP SR GLGYKSPEP+RITRKGK KV D  HITV+E+D  E+ KE  + 
Sbjct: 292 TQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEE-KEGDNQ 351

Query: 159 RTSAFDRIGPFV 171
           RTS FDRI P V
Sbjct: 352 RTSTFDRISPHV 362

[Close]
BLAST of Spg010880 vs. NCBI nr
Match: KAA0033244.1 (uncharacterized protein E6C27_scaffold845G00390 [Cucumis melo var. makuwa] >TYK19597.1 uncharacterized protein E5676_scaffold9G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-16
Identity = 49/72 (68.06%), Postives = 54/72 (75.00%), Query Frame = 0 

Query: 99  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDH 158
           T KKL +EGH IP SR GLGYKSPEP+RITRKGK KV D  HITV+E+D  E+ KE    
Sbjct: 28  TQKKLLREGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDNNHITVKEVDSMEE-KEGDSQ 87

Query: 159 RTSAFDRIGPFV 171
           RTSAFDRI P V
Sbjct: 88  RTSAFDRISPHV 98

[Close]
BLAST of Spg010880 vs. NCBI nr
Match: TYK25790.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-16
Identity = 50/72 (69.44%), Postives = 54/72 (75.00%), Query Frame = 0 

Query: 99  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDH 158
           T KKL +EGHVIP SR GLGYKSPEP+RITRKGK KV D  HITVEE+ DS + KE    
Sbjct: 782 TKKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDNNHITVEEV-DSMKEKEGDSQ 841

Query: 159 RTSAFDRIGPFV 171
           R SAFDRI P V
Sbjct: 842 RISAFDRISPHV 852

[Close]
BLAST of Spg010880 vs. ExPASy TrEMBL
Match: A0A5D3DXC7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00760 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.0e-17
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 0 

Query: 99  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDH 158
           T KKL +EGHVIP SR GLGYKSPEP+RITRKGK KV D+ HITV+E+D  E+ KE  + 
Sbjct: 266 TQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEE-KEGDNQ 325

Query: 159 RTSAFDRIGPFV 171
           RTS FDRI P V
Sbjct: 326 RTSTFDRISPHV 336

[Close]
BLAST of Spg010880 vs. ExPASy TrEMBL
Match: A0A5A7UMY2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00830 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.8e-17
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 0 

Query: 99  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDH 158
           T KKL +EGHVIP SR GLGYKSPEP+RITRKGK KV D  HITV+E+D  E+ KE  + 
Sbjct: 292 TQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEE-KEGDNQ 351

Query: 159 RTSAFDRIGPFV 171
           RTS FDRI P V
Sbjct: 352 RTSTFDRISPHV 362

[Close]
BLAST of Spg010880 vs. ExPASy TrEMBL
Match: A0A5A7UEC9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00760 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.8e-17
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 0 

Query: 99  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDH 158
           T KKL +EGH IP SR GLGYKSPEP+RITRKGK KV D+ HITV+E+D  E+ KE+   
Sbjct: 281 TQKKLLQEGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEE-KEDDSQ 340

Query: 159 RTSAFDRIGPFV 171
           RTSAFDRI P V
Sbjct: 341 RTSAFDRISPHV 351

[Close]
BLAST of Spg010880 vs. ExPASy TrEMBL
Match: A0A5A7SPV8 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9G00010 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.0e-16
Identity = 49/72 (68.06%), Postives = 54/72 (75.00%), Query Frame = 0 

Query: 99  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDH 158
           T KKL +EGH IP SR GLGYKSPEP+RITRKGK KV D  HITV+E+D  E+ KE    
Sbjct: 28  TQKKLLREGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDNNHITVKEVDSMEE-KEGDSQ 87

Query: 159 RTSAFDRIGPFV 171
           RTSAFDRI P V
Sbjct: 88  RTSAFDRISPHV 98

[Close]
BLAST of Spg010880 vs. ExPASy TrEMBL
Match: A0A5D3DR73 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold640G00350 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-16
Identity = 50/72 (69.44%), Postives = 54/72 (75.00%), Query Frame = 0 

Query: 99  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDH 158
           T KKL +EGHVIP SR GLGYKSPEP+RITRKGK KV D  HITVEE+ DS + KE    
Sbjct: 782 TKKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDNNHITVEEV-DSMKEKEGDSQ 841

Query: 159 RTSAFDRIGPFV 171
           R SAFDRI P V
Sbjct: 842 RISAFDRISPHV 852

The following BLAST results are available for this feature:
BLAST of Spg010880 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK28162.11.2e-1668.06uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa][more]
KAA0054152.11.6e-1668.06uncharacterized protein E6C27_scaffold131G00760 [Cucumis melo var. makuwa][more]
KAA0055957.11.6e-1668.06uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa][more]
KAA0033244.12.1e-1668.06uncharacterized protein E6C27_scaffold845G00390 [Cucumis melo var. makuwa] >TYK1... [more]
TYK25790.12.8e-1669.44ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Spg010880 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg010880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DXC76.0e-1768.06Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5A7UMY27.8e-1768.06Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5A7UEC97.8e-1768.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SPV81.0e-1668.06Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9G00010 P... [more]
A0A5D3DR731.3e-1669.44Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of Spg010880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg010880.1Spg010880.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0140640 catalytic activity, acting on a nucleic acid
molecular_function GO:0003676 nucleic acid binding