Spg005785 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg005785
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionsister chromatid cohesion protein SCC4
Locationscaffold11: 43418 .. 47866 (+)
RNA-Seq ExpressionSpg005785
SyntenySpg005785
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGGCGGTTGCGAGAGAGACGTCGACGATGGTAGGGATAGAGATGAAAAGGAGAAGGAGAAGTGAGAATGAGCGACGACCAAAAGCTTGAAAGAAAGGAGGAGAGAAAGAGATGAGAGATGGAAATAAAAAAAGAGAGGGAGTTGTAGAGGGAGAGAGAGAAGCCGTAAAGGGAGAGAAAGAGTGAAGGAGATGGATGGATTTTGGTTGTCCTTTGTTGGCTGATTGAGAGAAAGAGATTCAGAGAGAGAAAGTGATGTGACCTTTAGGGTTTGTAGGTAAAATTGGCTTTGGGCTTTTGAATATGGGCTTTGGGTCTATTATTAAAGGGTTGAAATAATTGTTTTTGTAGAGTTAATCAGTTCGGTTTTTTTAATTTTTTTAAAGGTTGAACCGCAGACCGAATCGAAAATCTCAATTTTTTTTTTATAATATTAAACCGAGAAACCTAATTTTTTATAAAATTAGACTGAACCAGTTGATTCGGTTCAGTTTTTGCACTCCTTTAATATATATATCTCTTATGTGAATGGAATAAAGCATTTTGATTCTCTCAAACCTTTGGCATTTACATGGTATCAGAGCGGGTCTAGGGCAATTAGGGTTTTGTCTCGTTAGAGATTTGTGAACCTTTTTAGGGTTTGATTTGGAACACCTATTAAGGGTTTTGTTTTGCCTTAAAAGTTTGTCGTCGCCAGAATCCGCCGCTGTCGTCGCCGCCAAGGTCTGTTGCCAGAGGAATTTTTCGTCACCGCCCAACCCAATAGGAAACCCACTCGCCAATCTACTGGTCCTCAAAATCCGAAGTAGAAATTCCCTGCGCGTGTGAGCGCGTGCACTGTCGGTTTTTTCTTCTTTTTTTTCGTGGATTGGCTCACTCTGGTCCCCACTTTCTAGTCGTGTGTTGCTTTGGGTCATATCGGGTTTGTTTGGTTGTGTTTGAAAGTCATAGTTTTTTTGGAATTTTAGGGTTTGTGTGATTCAGATTTCAACTCTATATCTTCTCACGACAGAGCAAATTGTTGATGTACTAACGAAGGGGCTTCCAAAGAAGCAATTGATAAACTAATTTGGCTCTTCTTGCTAAGTGGGGATTGGAGATATTCGAGAGATCCGGATTTGTTGTGGTGTTTAGTTGTTAAAAGCATTCATGGGCAGCATTGTTTTTTTTGGCTCTCTTCCGGTAAGGTTGGCTTGAGTTTTCGAAGTCCTTGGTTTAGCATTTCTAAGTGTTGGGGGAAGTTTATGTCTATTTTCAAGCTTCAATGGGTTTTTGATCAGTCATTCAAAGAAAACGTGCTGAATCTTTTAATTGGTCCAGTAATTCAGTCGGCTTCTATATTATTGTGGTTGATTGGTGTCAAAGCTGTTTTATCAGATTTTTGGTTTGAAAGGAATTTGTGGGTTTTTCATGGCTCTTCTCTTTCTTGGTTGGTTCGTTTTATCTTAGCTCGCCTCAAAGTTTCGTTATGGAGTTCGTTGTCCAAGCTTTATTCAACCTTCTCTATTCAGGATATTTGCCTTAATTGGGATGCTTTCATTTCTCCATCCTAAGTCTTCATTGTTCTTTTATGGGCTGTTTTTGTGTTCCTTTATAGCCGTGTGTTGATCTTTTATTGGTTGTTCTTATCATTATCTTGTTCTTTTATTGGCTGTATTTTCATTTCCTTTATTTTTCGTATCTTTGTATTTTGAGCATTAGTCTCTTTTCATTTCTTCAATGAAAAGTTTGTTTCCTTTTCAAAAGAAAAAAAAAATTGACAAGCTGGCTATGGAAGATATCTTTAAACCAGCTTGAGGGGGAGTGTTGGAATTTCTAGTCTTTAAAATTGTGTAAATATTATTTGTCAATATTTAGTCATTATTGTCTTTATTCTTTCCTTATATTGTAGTGGGTCTTTCTCCTATATAAGAAGACCTAGGTTGCACATATTTGAATAACGAAGAATTATCTTCTAAATTCAAGACATTTGGTTTCTTTTCATTAATCAATTAAAAGTTTGTTTCTTGTTAAAAAACCATTTGACAAAATTCAAAAGGAGAATACTGGATGTTTTCCTCCCTCTCAGTTGATAGTTGCCTCTTTCATCGATATACTTGTATTGTGTTATGTAGGCCTTGGTGCAGATGAAGAATTGGTTCTTGCGCTTTCCTACAATTTTACAGGCATGTGAGAGTATGATTGAGATGCTTAGAGGCCAGTATGCTCATTACGTTGGTTGTTACCATGAAGCAACCTTCCATTATATTGAAGCCGCGAAGGTGTCCATAGTTGCTTGCAATTCTAGTTTTCATGCTCTTGATACTACTTGAGAAGTCACACCGTGGTTATGGTTTGTTATTAGTGTCAAATTTTGTTAATTCAATCTCTTTCTTGATTATGTAGCTTACAGAGAGCAAATCAATTCAAGCAATGTGCCAAGTTTATGCGGCTGTCTCTTATATTTGTATTGGCGATGCGGAATCATCCACACAGGTAACTTGTTCTCCTACTTCAGAATTTATACACAAGATAAAATATGTGTCCACATTTGTTAGGTTCTTTTGTGGCTACTGTTAAAGAGATGAAAATACAAGAAAGACTATAAGAGTGCCTAAAGGCTAACAAAAAAACCTATAACATGCATAAATGATTGTTCAATGCAAGAATAATTAACACAAGAACTAGAAGAACTTCAAACAACTTTATACCTTCCATGCAAAATATGTCTTCATCCTCAAAGGTTATCTATTAGGTATCCAACCTCCTTAACCTGCAAGAAACTTAAGAAAACACACAAACAACACCAAAACAGCACGAAAATGGAGAGAAATAGACCCAACTCTGCTGTATTGAGGGGTTCTTCAATACACAGAGGGGTTATTAGCCGCTTGATATTGATAAACCAAAATAAGAACAAGAACAAGGATTCCCAGCATTCGAGAGGCTGGTTCTCTCCCTCTCAACCTAAGACAAAATGATTCCTGCCCTCCCAACATTCCCTGCATCCGTATACATCATTCCCTCACTCCCACACTCCCTGTGGTCCCCACAGCATCCTCTTCTAACTGTTTCTCTCTTTTCTCTATTTTACCCTTTTTCTTATAAACACGTGTGATAGGAGGCCTAACATTATCCTAATGTGTCCAAGCTCTGTAAAGGAATGTCTTCAAAAGTTAATCTACACTAAGGGAATGTAGCATGGGTTAGGGATTGTTTAGAGGCTATTGGCTCCTGTTTAGGGATGAGGTCCTTTTTTAGGAAGAAAAGGTGCCTATAAGCTTTAATCTAGGCTCGGTTGGTTGAGAAAGTTAGAGGAAGATGTTGTGTGGTTATGGTGGAATCGTTAAAAGGGAGGTGGTCCTCTTTGAACTTTCCAAAGGGAGGAGATAAGGGGTTGTTTTCAATGAGACTCTTTGATCATGCTCCTAGGAGGGTCAACGAAAGGTAGTGGCGAAGTGTCTAATTGCTTGAATCCCCTCAAGAGGCTGACGTCCTCCTTTGTTCAAATGCATTATTTGTTCAAATGGTAACAGGAGAAGGGAAAAAGTATGATGTATCAGAGATTAATGGCGAGGAAGAAAAGAATGTGCTGTTTGAAGTCTCGTATGTTTTACTAGTAAAGGAAAAGGCTAGTGATTTGTGGGTTAAGGTGGGGAAAGGAGTCAAAAGTCGGTTTGGGTTGCATATGTGTGAAACTGTTTTGTGGGAATATGGCAATGATTCCTTTCTTTGTGAGGATAGTCATCATAGGCAAAAAAATATTTGACTTTGGTGGAAGGGTGATTCTCGACTGTGCTTTGAGTTATTTGTGGTGGAATTCTGACAAGGTAGCAAAGGAAAGATGTTTATTGTTTATCAAGGGGTGGGTGAACTTCTTGGATATTCCTCCTCACTTATGGACAGTAGTGTCACTAGAAAGCTAGTTGATTTGTGTGATGGGATAGGAGAGTGAGAAGTGTCGATGTAGGGAGAAGGTTGGAAGGGGGAGATGAGAGGCTTTGTGAAGGGTAGGGAGGATGGTTTTACCCTAAGAGGTTGTTTTTTAAATTGGGAAGGGATTGATTTTCTAGTGGGGTTTGTTTTAGTGGACCTTTTCGGTGCCAAAAACAACTTTCGCTCGAAGAAGGAAGGTGTCATGTCGTTGTAGAGGACATACGATGATAGGCGGCACTGTTCAAAAGGTGACTTGGAGAAAACTCAGCCACACAATGTTATGTCAGGGTTTGGCAGCATTTCAAATTTTGGAGAGGGCTTAATTCAATTCCAGAGGCCCATTCCAGGGAAGTGTCGAAAGGGAAAAGGAGAGTGGACACTGGGCCACCTCAATTGATGGGCCTAAAAACCCTAGTGATAAGCAAAGGACTAGCATTAGTGGGTTGTTTGATGAAAAATCTAGTGGGTTTAGGAAAAGTGAAAAGCAGAGCATGGGGGGGGATATGGAGGAGGGGGTGATTTCGGGTTAG

mRNA sequence

ATGATAGGCGGTTGCGAGAGAGACGTCGACGATGGTAGGGATAGAGATGAAAAGGAGAAGGAGAATTTGTCGTCGCCAGAATCCGCCGCTGTCGTCGCCGCCAAGGCCTTGGTGCAGATGAAGAATTGGTTCTTGCGCTTTCCTACAATTTTACAGGCATGTGAGAGTATGATTGAGATGCTTAGAGGCCAGTATGCTCATTACGTTGGTTGTTACCATGAAGCAACCTTCCATTATATTGAAGCCGCGAAGCTTACAGAGAGCAAATCAATTCAAGCAATGTGCCAAGTTTATGCGGCTGTCTCTTATATTTGTATTGGCGATGCGGAATCATCCACACAGGCTGACGTCCTCCTTTGTTCAAATGCATTATTTGTTCAAATGGTAACAGGAGAAGGGAAAAAGTATGATGTATCAGAGATTAATGGCGAGGAAGAAAAGAATGTGCTGTTTGAAGTCTCGTATGTTTTACTAGTAAAGGAAAAGGCTAGTGATTTGTGGGTTAAGGGAAGTGTCGAAAGGGAAAAGGAGAGTGGACACTGGGCCACCTCAATTGATGGGCCTAAAAACCCTAGTGATAAGCAAAGGACTAGCATTAGTGGGTTGTTTGATGAAAAATCTAGTGGGTTTAGGAAAAGTGAAAAGCAGAGCATGGGGGGGGATATGGAGGAGGGGGTGATTTCGGGTTAG

Coding sequence (CDS)

ATGATAGGCGGTTGCGAGAGAGACGTCGACGATGGTAGGGATAGAGATGAAAAGGAGAAGGAGAATTTGTCGTCGCCAGAATCCGCCGCTGTCGTCGCCGCCAAGGCCTTGGTGCAGATGAAGAATTGGTTCTTGCGCTTTCCTACAATTTTACAGGCATGTGAGAGTATGATTGAGATGCTTAGAGGCCAGTATGCTCATTACGTTGGTTGTTACCATGAAGCAACCTTCCATTATATTGAAGCCGCGAAGCTTACAGAGAGCAAATCAATTCAAGCAATGTGCCAAGTTTATGCGGCTGTCTCTTATATTTGTATTGGCGATGCGGAATCATCCACACAGGCTGACGTCCTCCTTTGTTCAAATGCATTATTTGTTCAAATGGTAACAGGAGAAGGGAAAAAGTATGATGTATCAGAGATTAATGGCGAGGAAGAAAAGAATGTGCTGTTTGAAGTCTCGTATGTTTTACTAGTAAAGGAAAAGGCTAGTGATTTGTGGGTTAAGGGAAGTGTCGAAAGGGAAAAGGAGAGTGGACACTGGGCCACCTCAATTGATGGGCCTAAAAACCCTAGTGATAAGCAAAGGACTAGCATTAGTGGGTTGTTTGATGAAAAATCTAGTGGGTTTAGGAAAAGTGAAAAGCAGAGCATGGGGGGGGATATGGAGGAGGGGGTGATTTCGGGTTAG

Protein sequence

MIGGCERDVDDGRDRDEKEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATFHYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQADVLLCSNALFVQMVTGEGKKYDVSEINGEEEKNVLFEVSYVLLVKEKASDLWVKGSVEREKESGHWATSIDGPKNPSDKQRTSISGLFDEKSSGFRKSEKQSMGGDMEEGVISG
Homology
[Close]
BLAST of Spg005785 vs. NCBI nr
Match: XP_022158435.1 (sister chromatid cohesion protein SCC4 [Momordica charantia])

HSP 1 Score: 167.5 bits (423), Expect = 1.3e-37
Identity = 84/98 (85.71%), Postives = 87/98 (88.78%), Query Frame = 0 

Query: 18  KEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 77
           + K  +    S  V A +ALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF
Sbjct: 412 ENKVAIELTRSEFVEAQEALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 471

Query: 78  HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
           HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA
Sbjct: 472 HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 509

[Close]
BLAST of Spg005785 vs. NCBI nr
Match: KAA0052897.1 (MAU2 chromatid cohesion factor-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 164.9 bits (416), Expect = 8.4e-37
Identity = 83/98 (84.69%), Postives = 86/98 (87.76%), Query Frame = 0 

Query: 18  KEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 77
           + K  +    S  V A +ALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF
Sbjct: 402 ENKVAIELTRSEFVEAQEALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 461

Query: 78  HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
           HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESST A
Sbjct: 462 HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTLA 499

[Close]
BLAST of Spg005785 vs. NCBI nr
Match: XP_031738040.1 (sister chromatid cohesion protein SCC4 isoform X4 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 8.4e-37
Identity = 83/98 (84.69%), Postives = 86/98 (87.76%), Query Frame = 0 

Query: 18  KEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 77
           + K  +    S  V A +ALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF
Sbjct: 477 ENKVAIELTRSEFVEAQEALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 536

Query: 78  HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
           HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESST A
Sbjct: 537 HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTLA 574

[Close]
BLAST of Spg005785 vs. NCBI nr
Match: XP_031738038.1 (sister chromatid cohesion protein SCC4 isoform X1 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 8.4e-37
Identity = 83/98 (84.69%), Postives = 86/98 (87.76%), Query Frame = 0 

Query: 18  KEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 77
           + K  +    S  V A +ALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF
Sbjct: 477 ENKVAIELTRSEFVEAQEALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 536

Query: 78  HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
           HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESST A
Sbjct: 537 HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTLA 574

[Close]
BLAST of Spg005785 vs. NCBI nr
Match: XP_031738617.1 (sister chromatid cohesion protein SCC4-like, partial [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 8.4e-37
Identity = 83/98 (84.69%), Postives = 86/98 (87.76%), Query Frame = 0 

Query: 18  KEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 77
           + K  +    S  V A +ALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF
Sbjct: 125 ENKVAIELTRSEFVEAQEALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 184

Query: 78  HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
           HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESST A
Sbjct: 185 HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTLA 222

[Close]
BLAST of Spg005785 vs. ExPASy Swiss-Prot
Match: Q9FGN7 (Sister chromatid cohesion protein SCC4 OS=Arabidopsis thaliana OX=3702 GN=SCC4 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.7e-28
Identity = 65/93 (69.89%), Postives = 72/93 (77.42%), Query Frame = 0 

Query: 23  LSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATFHYIEA 82
           L    S  V A +ALV MKNWF RFPTILQA E MIEMLRGQY+H VGCY EA FH IEA
Sbjct: 418 LELTRSDYVEAEEALVDMKNWFTRFPTILQASECMIEMLRGQYSHSVGCYSEAAFHCIEA 477

Query: 83  AKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
            KLTES S+QA CQ +AAVSY+ IGDAESS++A
Sbjct: 478 TKLTESISMQASCQAFAAVSYLTIGDAESSSKA 510

[Close]
BLAST of Spg005785 vs. ExPASy TrEMBL
Match: A0A6J1DVU1 (sister chromatid cohesion protein SCC4 OS=Momordica charantia OX=3673 GN=LOC111024925 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 6.3e-38
Identity = 84/98 (85.71%), Postives = 87/98 (88.78%), Query Frame = 0 

Query: 18  KEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 77
           + K  +    S  V A +ALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF
Sbjct: 412 ENKVAIELTRSEFVEAQEALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 471

Query: 78  HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
           HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA
Sbjct: 472 HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 509

[Close]
BLAST of Spg005785 vs. ExPASy TrEMBL
Match: A0A5D3CHS2 (MAU2 chromatid cohesion factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00010 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.1e-37
Identity = 83/98 (84.69%), Postives = 86/98 (87.76%), Query Frame = 0 

Query: 18  KEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 77
           + K  +    S  V A +ALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF
Sbjct: 401 ENKVAIELTRSEFVEAQEALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 460

Query: 78  HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
           HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESST A
Sbjct: 461 HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTLA 498

[Close]
BLAST of Spg005785 vs. ExPASy TrEMBL
Match: A0A5A7UEF7 (MAU2 chromatid cohesion factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold344G00010 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.1e-37
Identity = 83/98 (84.69%), Postives = 86/98 (87.76%), Query Frame = 0 

Query: 18  KEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 77
           + K  +    S  V A +ALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF
Sbjct: 402 ENKVAIELTRSEFVEAQEALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 461

Query: 78  HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
           HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESST A
Sbjct: 462 HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTLA 499

[Close]
BLAST of Spg005785 vs. ExPASy TrEMBL
Match: A0A0A0L4R7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000010 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.1e-37
Identity = 83/98 (84.69%), Postives = 86/98 (87.76%), Query Frame = 0 

Query: 18  KEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 77
           + K  +    S  V A +ALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF
Sbjct: 412 ENKVAIELTRSEFVEAQEALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 471

Query: 78  HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
           HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESST A
Sbjct: 472 HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTLA 509

[Close]
BLAST of Spg005785 vs. ExPASy TrEMBL
Match: A0A1S3BJ17 (LOW QUALITY PROTEIN: MAU2 chromatid cohesion factor homolog OS=Cucumis melo OX=3656 GN=LOC103490628 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.1e-37
Identity = 83/98 (84.69%), Postives = 86/98 (87.76%), Query Frame = 0 

Query: 18  KEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 77
           + K  +    S  V A +ALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF
Sbjct: 412 ENKVAIELTRSEFVEAQEALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 471

Query: 78  HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
           HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESST A
Sbjct: 472 HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTLA 509

[Close]
BLAST of Spg005785 vs. TAIR 10
Match: AT5G51340.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 125.9 bits (315), Expect = 4.0e-29
Identity = 65/93 (69.89%), Postives = 72/93 (77.42%), Query Frame = 0 

Query: 23  LSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATFHYIEA 82
           L    S  V A +ALV MKNWF RFPTILQA E MIEMLRGQY+H VGCY EA FH IEA
Sbjct: 418 LELTRSDYVEAEEALVDMKNWFTRFPTILQASECMIEMLRGQYSHSVGCYSEAAFHCIEA 477

Query: 83  AKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
            KLTES S+QA CQ +AAVSY+ IGDAESS++A
Sbjct: 478 TKLTESISMQASCQAFAAVSYLTIGDAESSSKA 510

The following BLAST results are available for this feature:
BLAST of Spg005785 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158435.11.3e-3785.71sister chromatid cohesion protein SCC4 [Momordica charantia][more]
KAA0052897.18.4e-3784.69MAU2 chromatid cohesion factor-like protein [Cucumis melo var. makuwa][more]
XP_031738040.18.4e-3784.69sister chromatid cohesion protein SCC4 isoform X4 [Cucumis sativus][more]
XP_031738038.18.4e-3784.69sister chromatid cohesion protein SCC4 isoform X1 [Cucumis sativus][more]
XP_031738617.18.4e-3784.69sister chromatid cohesion protein SCC4-like, partial [Cucumis sativus][more]
BLAST of Spg005785 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FGN75.7e-2869.89Sister chromatid cohesion protein SCC4 OS=Arabidopsis thaliana OX=3702 GN=SCC4 P... [more]
BLAST of Spg005785 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DVU16.3e-3885.71sister chromatid cohesion protein SCC4 OS=Momordica charantia OX=3673 GN=LOC1110... [more]
A0A5D3CHS24.1e-3784.69MAU2 chromatid cohesion factor-like protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7UEF74.1e-3784.69MAU2 chromatid cohesion factor-like protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A0A0L4R74.1e-3784.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000010 PE=3 SV=1[more]
A0A1S3BJ174.1e-3784.69LOW QUALITY PROTEIN: MAU2 chromatid cohesion factor homolog OS=Cucumis melo OX=3... [more]
BLAST of Spg005785 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G51340.14.0e-2969.89Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..204
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 178..229
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
IPR019440Chromatid cohesion factor MAU2PANTHERPTHR21394UNCHARACTERIZEDcoord: 28..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg005785.1Spg005785.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007064 mitotic sister chromatid cohesion