Spg001370 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCAGCAGCCGAGAAGCAAGAGTCGAGTTCTTCTTGTTGATCGTCTGGACTAAAAACAACTTTCAGAATCTATCATTTCTTCGGATTAACAATGGCCTCCATTGGCGCTAGGTCTGTTTTTCGGTCATTTTCCGGTTCTGCACGCCGTGCTGCTGCTCAGATCGGTTCTCAAGCCCGGCCGTCGAGCTCTCCCTTTCGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGCGTTTCTTAATGCATTTGTTTCCATTAAAAGTGCCAAAAGATTTCTAATCAATAGCTCTCTGAGTTTTTTTTTGCTCGCCCAAAAGGAGAAACATTTCAATAAGTATGGTAATATATTTGGCTTATGAAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGCTGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCTCACGCCGCAGCTGCGGTTGGCTTCCCGAAGGTGCGCTAACTGATAACTCAATTCTCCACTTTCTTTATCTGTCATGAGCTAGATCGAAAGAGAAAAGGACGATATAATAAATTTGTATAGTTTAGAATTTAGATCATACCTATAACTTCAGAATGACTGCTGCCTTGGACTAGAAATAGAGTCGGTAATTTCCTGGAAGTTGATTTTTTTTATTTGTATTAGTTCTTCGTTGGATGAATTTCAGCTTTATAATATTTTCATGAATCAAGAAAGAAAGTTGTAGTTTGAGTGGGGATAATGATCAATTTTATTTAGAAATAGTGATATCTTTATAAAGGTTTAGCGGTTACATTAGCCCCATTAGCCAAGCCACATTAACCGGATGTTTCTGGAGGATGAAAGATCTATGTGATTTAAGTAGCTAATGTCTATGAACCATCAGGAGCTACACCATGAAAATATTTCTTTTGGGTTAAATTTAGTACTGATATGGATTCTCATGCCAAGTAACTTGTAATTGTCCGTAAGAATTTCCTGTGTACACAAAGTTGGATGTGTTAACGCTAGTTTTATGATATCTCTTCATGAGCTTTTTTTTCTTACTATTGACTATTTCTGGTTTCTCCACTTCATATAAAACTTGTAATCATAGAGATTCCTGATCCAGCTCCGTAATTTTCTTGATTTTTTGTTTTGAAAGGAGAAGTGGATCTGCTTCTAGGTTGTCTAACTAGTGGATTTTTTACTCTTGAATTAGGTAGCTAGCACACTTTATAGGCCCATTGATGTTCTTCTTGCCTTCTTGTTGCTCTGGTGAGTTGGTGCCTATAAACTTGTATAGGGCTGATAAAATTGAACGGAATTATATAATAACATGCATGCACAACAACTTGATCATCTTTTCCCCTCAGTTAGACAGTTTATTACATCTAGTAGATAATCTTCAAATTAGGACGCAAACAAGCTTAACGGACAATAATGTTTCATTCTCTCTTTTCTTCACCTCCCATGACCCATACTTGGATCAGAGTTAAGTCCTTTTGCTGAACTCGGGTGTTATAAACCTTCTCTTCATTGTTTTTTTATTCTCACTAGAATGAGTCATTTATAAGAAAACCCTCCATTCTTTATTCAAACTGTTAATTAAAAAAGTACATTCCCCTGTTTTCAATGTAGGCAAAGACAAGACTAGATGAGGATCGAGAAGCAGGAAGGAATGACTTGAGTTGTTTTCTGAGTTTCACCTTTTAAGTCCTAGGCGATGCATAACCCCCTGCCCCACCCCCAAGACAAAAAAAGGGAAAAAAAACTTTTAGGCGATGATATCATCAATAGGTTAAATGAGATGATTGTATTTGGAATTAAATAATGAACTCTGATATTCTATTCCGTTCACTGTGTTTGTAGATTGTTGTCTTTTAAAGTATTAAAGGATCATATATTCAATTTAATTCTGCAACTATATTGGATTACAGATTACTAGATCCCTGCAGAATAAATTTTGTTTCTAAATAGTTTATTGTTTGCTGTTTTGCAAAACTTACTTTTGTTTATCAAGTTTTTGGTACTGTTGATTTGTTGTTTTCCCAATTCCTCTACTTCATAAAGATGGGGGTTGCAAATTCAACAGTATGTGTCTATGTGACTCTGACCATCAAGTATCATGCAAAGGAGTTTGAAGTAAGCTAAATCATGTGTCGGTTGTTTAACTAAAATGGAGTTATTTTATTTACCATTATTGAGCTCTTTAAGTCAAGAAATAGTTATTGATGTCACCAAACATATGGAGTTTGCAGTTTTAGATACACGTACCTATTTTTCTTTTTTCCAATCTAATTTAAGGATGATTGATGAAAAATTAGTCTTAACTTTTTTTAATAATACTTTGAAATATCTTGGGAAAAAAATTGCTTCCAACTAAAATGAATTCTGTAGTTTCCATGATCCAAACTTAGGTCCAAACTTTCCACCTTTTACGTCTAGACTAGAAAATGTCAATCTATATATCTCTTTGATGAGCATGCTGAACACCTCCCAAATTGTTTCTTGATTTGACTGGAAGATCAAACTGACATTAATTACACACTGATCACCTGTGTTCATCAGCATGCAATGATGATCTATGATAAATGACAAGGATCTGAGGAAGTTCTTTATCCAACTCTCCATACGGACAGTGCTTTCTATTAACTAGAAGCTTCCAAGCTCCAGTTGGTGATTAGTGAAGAAGAGCTTCTGATCAATGGCAATGGTTGATTGTTATTTGAAGACTAGTCTAAACTTGTAATGCCCAATATGTTCATCATAGACTTGATGCTCAATGTAGTACATGTTGATTGTTGACATTTATACGTGACCGTATTAACGTTTTCATTAAGCAATTGAATGCGTTGTTTTCTTGCTTGAAAAGTGGGTTTGTATTTTGTAGTAGTTTCGACAGAAGTTACTTGAAATCTGTGAGATAGTGATGCATGGTTGAATAGGAGTGTCTTGATTAATATATCAAAGTGAAAATTCTCAAACCAGACAGCGCACTTTTTAATATTGCCCCCTCGTAGTATTGCTGCCAACTCCTTATCTTAGCCAACTTCGCTCTTCTAAGGCTGATTGCCTCTTGTTTTGTTGTTTTCTAGGGCGGTGATATCCAATGAGCATGTCTAGCATGAAGGTTTGCAACAATGTTGAACTAGCCATTTTCATTGCCCGTCTGTGCCTCAAGCCGTCTTAATCTATCTGAGTTTTAACAGATTCTTTTCATATCCTATCTTTGCCCATATATTCTGAACTCTGTTTTCTGGCTGTACATTGGATACGATCCAATGTAGATCATCTGCAGACATCCTATTACATCTTTTATGTTAAACAGTAGTTGAATTAATGATATAATGATCTAAATCAGAATCTAGATGCGAGGACAGCTTCCAGTTAATGATTTGCTCAGTTTATAGCATGAGACCAAATTATGTTTGTTTGTTTTTTGCTCAACCATGTTCTAATGTTTTTATTTAGTATGAGGTTCGATTTGATCCAGGAACAAACTACACAAATTTGGTTGGAAATGAAATAGGGATTAGTTCCTACCAATGTTCATGTATAAGTTTGAATATGAAATGATTGAC ATGGCCTCCATTGGCGCTAGGTCTGTTTTTCGGTCATTTTCCGGTTCTGCACGCCGTGCTGCTGCTCAGATCGGTTCTCAAGCCCGGCCGTCGAGCTCTCCCTTTCGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGCTGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCTCACGCCGCAGCTGCGGTTGGCTTCCCGAAGTTTTTGGTACTGTTGATTTGTTGTTTTCCCAATTCCTCTACTTCATAAAGATGGGGGTTGCAAATTCAACAGTATGTGTCTATGTGACTCTGACCATCAAGTATCATGCAAAGGAGTTTGAAGGCGGTGATATCCAATGA ATGGCCTCCATTGGCGCTAGGTCTGTTTTTCGGTCATTTTCCGGTTCTGCACGCCGTGCTGCTGCTCAGATCGGTTCTCAAGCCCGGCCGTCGAGCTCTCCCTTTCGAATGGCAACTAACAAGCCCCTCTCTCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGCTGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCTCACGCCGCAGCTGCGGTTGGCTTCCCGAAGTTTTTGGTACTGTTGATTTGTTGTTTTCCCAATTCCTCTACTTCATAAAGATGGGGGTTGCAAATTCAACAGTATGTGTCTATGTGACTCTGACCATCAAGTATCATGCAAAGGAGTTTGAAGGCGGTGATATCCAATGA MASIGARSVFRSFSGSARRAAAQIGSQARPSSSPFRMATNKPLSHRTFRCAAEMSFCLESLMPFHSASSSALMTSMLSISRRSCGWLPEVFGTVDLLFSQFLYFIKMGVANSTVCVYVTLTIKYHAKEFEGGDIQ Homology
BLAST of Spg001370 vs. NCBI nr
Match: XP_022140728.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Momordica charantia]) HSP 1 Score: 159.1 bits (401), Expect = 2.7e-35 Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0
BLAST of Spg001370 vs. NCBI nr
Match: XP_022140726.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Momordica charantia]) HSP 1 Score: 159.1 bits (401), Expect = 2.7e-35 Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0
BLAST of Spg001370 vs. NCBI nr
Match: XP_022140727.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Momordica charantia]) HSP 1 Score: 159.1 bits (401), Expect = 2.7e-35 Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0
BLAST of Spg001370 vs. NCBI nr
Match: KAG7010763.1 (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 154.1 bits (388), Expect = 8.8e-34 Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0
BLAST of Spg001370 vs. NCBI nr
Match: KAG6570920.1 (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 154.1 bits (388), Expect = 8.8e-34 Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0
BLAST of Spg001370 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 7.8e-09 Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 0
BLAST of Spg001370 vs. ExPASy TrEMBL
Match: A0A6J1CIN8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111011321 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35 Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0
BLAST of Spg001370 vs. ExPASy TrEMBL
Match: A0A6J1CHV9 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011321 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35 Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0
BLAST of Spg001370 vs. ExPASy TrEMBL
Match: A0A6J1CGX5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011321 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35 Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0
BLAST of Spg001370 vs. ExPASy TrEMBL
Match: A0A6J1I155 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469903 PE=4 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 5.6e-34 Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0
BLAST of Spg001370 vs. ExPASy TrEMBL
Match: A0A6J1I2H5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469903 PE=4 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 5.6e-34 Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0
BLAST of Spg001370 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 64.3 bits (155), Expect = 8.5e-11 Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 0
BLAST of Spg001370 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 64.3 bits (155), Expect = 8.5e-11 Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 0
BLAST of Spg001370 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 64.3 bits (155), Expect = 8.5e-11 Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 0
BLAST of Spg001370 vs. TAIR 10
Match: AT1G28395.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 64.3 bits (155), Expect = 8.5e-11 Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 0
BLAST of Spg001370 vs. TAIR 10
Match: AT1G28395.5 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1). ) HSP 1 Score: 64.3 bits (155), Expect = 8.5e-11 Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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