HG10019373 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGGTTTCAATTCAGCAACATTACAATCAAAGTTCTAACACATTCAATCATCTCAATGAAACAGATCACTGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAGATTCATCTTCCAGATATTGGAGGTGACGATCCATCGGTAAGTTTCTGAAGTTTTTGCATTTCTTCACTTCAATCACCAAGAACTATGACACCCTTCTTAAACTTAACAGGTGATCTACGTTAAACCTGGACTTGAAGCCGATCTAGATTCATTGGTATGTGACACAATTAGGCTTACCACCTCAACCAAGGTGAGAAGTTGAATGCAAATAGAATTTGGCCTACTTATCAATAACCATTATATCTAAACTCTACCAAGATTCAATTGGAAGAAGTTAACAAAACAGCATACCTCTTCCAGGACACTTGCTCAGAGTTGTGTGAAAAATCTCAACCCACAGTACAATGTAAGTGGTCAAGTGTCACTCAAGCTTCCACTTGCAATCGACGTTGGGACTAATTGAGAAATGTTCATTGCAGATATTGGGGCACAGAATGCTGCATCTATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAGAAAATCTAATGCATAG ATGAGGTTTCAATTCAGCAACATTACAATCAAAGTTCTAACACATTCAATCATCTCAATGAAACAGATCACTGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAGATTCATCTTCCAGATATTGGAGGTGACGATCCATCGGTGATCTACGTTAAACCTGGACTTGAAGCCGATCTAGATTCATTGGTATGTGACACAATTAGGCTTACCACCTCAACCAAGGACACTTGCTCAGAGTTGTGTGAAAAATCTCAACCCACAGTACAATATATTGGGGCACAGAATGCTGCATCTATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAGAAAATCTAATGCATAG ATGAGGTTTCAATTCAGCAACATTACAATCAAAGTTCTAACACATTCAATCATCTCAATGAAACAGATCACTGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAGATTCATCTTCCAGATATTGGAGGTGACGATCCATCGGTGATCTACGTTAAACCTGGACTTGAAGCCGATCTAGATTCATTGGTATGTGACACAATTAGGCTTACCACCTCAACCAAGGACACTTGCTCAGAGTTGTGTGAAAAATCTCAACCCACAGTACAATATATTGGGGCACAGAATGCTGCATCTATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAGAAAATCTAATGCATAG MRFQFSNITIKVLTHSIISMKQITANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVCDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNA Homology
BLAST of HG10019373 vs. NCBI nr
Match: XP_022934819.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 [Cucurbita moschata]) HSP 1 Score: 193.7 bits (491), Expect = 8.8e-46 Identity = 101/119 (84.87%), Postives = 109/119 (91.60%), Query Frame = 0
BLAST of HG10019373 vs. NCBI nr
Match: XP_022983268.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2 [Cucurbita maxima]) HSP 1 Score: 191.8 bits (486), Expect = 3.4e-45 Identity = 100/119 (84.03%), Postives = 108/119 (90.76%), Query Frame = 0
BLAST of HG10019373 vs. NCBI nr
Match: KAG6581325.1 (Large ribosomal RNA subunit accumulation protein YCED-like 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 191.0 bits (484), Expect = 5.7e-45 Identity = 100/119 (84.03%), Postives = 108/119 (90.76%), Query Frame = 0
BLAST of HG10019373 vs. NCBI nr
Match: XP_011651803.2 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 [Cucumis sativus] >KAE8650945.1 hypothetical protein Csa_002331 [Cucumis sativus]) HSP 1 Score: 187.6 bits (475), Expect = 6.3e-44 Identity = 93/99 (93.94%), Postives = 97/99 (97.98%), Query Frame = 0
BLAST of HG10019373 vs. NCBI nr
Match: XP_031738565.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Cucumis sativus] >KAE8650911.1 hypothetical protein Csa_001037 [Cucumis sativus]) HSP 1 Score: 187.6 bits (475), Expect = 6.3e-44 Identity = 93/99 (93.94%), Postives = 97/99 (97.98%), Query Frame = 0
BLAST of HG10019373 vs. ExPASy Swiss-Prot
Match: Q9C5M1 (Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g19800 PE=2 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 2.0e-29 Identity = 66/111 (59.46%), Postives = 82/111 (73.87%), Query Frame = 0
BLAST of HG10019373 vs. ExPASy TrEMBL
Match: A0A6J1F3N3 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441878 PE=4 SV=1) HSP 1 Score: 193.7 bits (491), Expect = 4.3e-46 Identity = 101/119 (84.87%), Postives = 109/119 (91.60%), Query Frame = 0
BLAST of HG10019373 vs. ExPASy TrEMBL
Match: A0A6J1J7A5 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481900 PE=4 SV=1) HSP 1 Score: 191.8 bits (486), Expect = 1.6e-45 Identity = 100/119 (84.03%), Postives = 108/119 (90.76%), Query Frame = 0
BLAST of HG10019373 vs. ExPASy TrEMBL
Match: A0A0A0L9P4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656510 PE=4 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 3.1e-44 Identity = 93/99 (93.94%), Postives = 97/99 (97.98%), Query Frame = 0
BLAST of HG10019373 vs. ExPASy TrEMBL
Match: A0A5D3C1F8 (DUF177 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00270 PE=4 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 3.4e-43 Identity = 96/114 (84.21%), Postives = 101/114 (88.60%), Query Frame = 0
BLAST of HG10019373 vs. ExPASy TrEMBL
Match: A0A1S3CFK7 (uncharacterized protein LOC103500366 OS=Cucumis melo OX=3656 GN=LOC103500366 PE=4 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 3.4e-43 Identity = 96/114 (84.21%), Postives = 101/114 (88.60%), Query Frame = 0
BLAST of HG10019373 vs. TAIR 10
Match: AT3G19800.1 (Protein of unknown function (DUF177) ) HSP 1 Score: 129.8 bits (325), Expect = 1.5e-30 Identity = 66/111 (59.46%), Postives = 82/111 (73.87%), Query Frame = 0
BLAST of HG10019373 vs. TAIR 10
Match: AT3G19800.2 (Protein of unknown function (DUF177) ) HSP 1 Score: 129.8 bits (325), Expect = 1.5e-30 Identity = 66/111 (59.46%), Postives = 82/111 (73.87%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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