HG10002772 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10002772
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionATP-binding/protein serine/threonine kinase
LocationChr11: 12097084 .. 12097422 (-)
RNA-Seq ExpressionHG10002772
SyntenyHG10002772
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGTCCTCGACAAAGTTTGCAATCTTGCTCCTAATGTTCTTCATTGCCTCTGGTATATAAATCAATTTTAATTAATTATATCCAATATTTTTTCTCTTTTCGCAATAGATATCTTATTCTATGACAATTAACAAGTAAACTATTTTAGAGACATTGTTCGTGTTAGATGCCAGAAATGTTGTAAACATTCCATGCAAAAGTCGTATTGATTGTTCTGATCCATGGTACTGTGATTGCAAGGTCAACCTATGTTTTTGCCACCCAGGATCCGAAAAGAAATTTCTTGACAAAGCCTTTCCTGAATATTTGGGAGAAGAAAAGACAACTCCTTGA

mRNA sequence

ATGGAGAAGTCCTCGACAAAGTTTGCAATCTTGCTCCTAATGTTCTTCATTGCCTCTGAGACATTGTTCGTGTTAGATGCCAGAAATGTTGTAAACATTCCATGCAAAAGTCGTATTGATTGTTCTGATCCATGGTACTGTGATTGCAAGGTCAACCTATGTTTTTGCCACCCAGGATCCGAAAAGAAATTTCTTGACAAAGCCTTTCCTGAATATTTGGGAGAAGAAAAGACAACTCCTTGA

Coding sequence (CDS)

ATGGAGAAGTCCTCGACAAAGTTTGCAATCTTGCTCCTAATGTTCTTCATTGCCTCTGAGACATTGTTCGTGTTAGATGCCAGAAATGTTGTAAACATTCCATGCAAAAGTCGTATTGATTGTTCTGATCCATGGTACTGTGATTGCAAGGTCAACCTATGTTTTTGCCACCCAGGATCCGAAAAGAAATTTCTTGACAAAGCCTTTCCTGAATATTTGGGAGAAGAAAAGACAACTCCTTGA

Protein sequence

MEKSSTKFAILLLMFFIASETLFVLDARNVVNIPCKSRIDCSDPWYCDCKVNLCFCHPGSEKKFLDKAFPEYLGEEKTTP
Homology
BLAST of HG10002772 vs. NCBI nr
Match: KAE8651915.1 (hypothetical protein Csa_006059 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 4.0e-26
Identity = 63/80 (78.75%), Postives = 68/80 (85.00%), Query Frame = 0

Query: 1  MEKSSTKFAILLLMFFIASETLFVLDARNVVNIPCKSRIDCSDPWYCDCKVNLCFCHP-G 60
          M KSSTK A+LLLMFFI SE +FV +ARNVVNIPC SRIDCSDPW CDCK+NLCFCHP G
Sbjct: 1  MVKSSTKLALLLLMFFIISE-MFVANARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 SEKKFLDKAFPEYLGEEKTT 80
           EKKFL  AFPE+L EEKTT
Sbjct: 61 LEKKFLHNAFPEHLREEKTT 79

BLAST of HG10002772 vs. NCBI nr
Match: KGN61957.1 (hypothetical protein Csa_006779 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 4.9e-24
Identity = 58/78 (74.36%), Postives = 63/78 (80.77%), Query Frame = 0

Query: 1  MEKSSTKFAILLLMFFIASETLFVLDARNVVNIPCKSRIDCSDPWYCDCKVNLCFCHP-G 60
          M K  TKFA+  LM FI SE LFV DARNVVNIPC+SRIDCSDPW CDCK+NLCFCHP G
Sbjct: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 SEKKFLDKAFPEYLGEEK 78
           EKKFL KAFPE L E++
Sbjct: 61 LEKKFLHKAFPESLREDR 78

BLAST of HG10002772 vs. NCBI nr
Match: RQP00499.1 (hypothetical protein POPTR_015G021450 [Populus trichocarpa])

HSP 1 Score: 57.0 bits (136), Expect = 8.7e-05
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 0

Query: 1  MEKSSTKFAILLLMFFIASETLFVLDARNVVNIPCKSRIDCSDPWYCDCKVNLCFCHPGS 60
          MEKSS K A   ++   A+ T    +ARN +NIPCK+  +C    +C C +NLCFCHP  
Sbjct: 1  MEKSSMKMAFFAVLLVFAAGTQLGAEARN-INIPCKTVKNCVPAGHCKCIMNLCFCHPDE 60

Query: 61 E 62
          +
Sbjct: 61 Q 60

BLAST of HG10002772 vs. NCBI nr
Match: EOY32074.1 (Uncharacterized protein TCM_039540 [Theobroma cacao])

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 0

Query: 1  MEKSSTKFAILLLMFFIASETLFVLDARNVVNIPCKSRIDCSDPWYCDCKVNLCFCHP 59
          MEK S K   L  +   A      ++ARN +N PC +  DC+DP  C+C++NLCFCHP
Sbjct: 1  MEKFSFKLIFLAALLVFALGLQVGVEARN-INTPCNTVKDCADPIKCECRINLCFCHP 57

BLAST of HG10002772 vs. NCBI nr
Match: OMO57769.1 (ATP-binding/protein serine/threonine kinase [Corchorus olitorius])

HSP 1 Score: 54.7 bits (130), Expect = 4.3e-04
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 1  MEKSSTK---FAILLLMFFIASETLFVLDARNVVNIPCKSRIDCSDPWYCDCKVNLCFCH 60
          MEK++     F   LL+ F  S+    ++ARN +NIPC +  DC DP  C+C++NLCFCH
Sbjct: 1  MEKTTLMKMIFLAALLINFAGSQV--GVEARN-INIPCNTIKDCPDPVKCECRINLCFCH 60

BLAST of HG10002772 vs. ExPASy TrEMBL
Match: A0A0A0LJR0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285280 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.3e-27
Identity = 65/80 (81.25%), Postives = 68/80 (85.00%), Query Frame = 0

Query: 1  MEKSSTKFAILLLMFFIASETLFVLDARNVVNIPCKSRIDCSDPWYCDCKVNLCFCHP-G 60
          M KSSTK A+LLLMFFI SET FV DARNVVNIPC SRIDCSDPW CDCK+NLCFCHP G
Sbjct: 1  MVKSSTKLALLLLMFFIISET-FVADARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 SEKKFLDKAFPEYLGEEKTT 80
           EKKFL  AFPE+L EEKTT
Sbjct: 61 LEKKFLHNAFPEHLREEKTT 79

BLAST of HG10002772 vs. ExPASy TrEMBL
Match: A0A0A0LMG3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G276990 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.4e-24
Identity = 58/78 (74.36%), Postives = 63/78 (80.77%), Query Frame = 0

Query: 1  MEKSSTKFAILLLMFFIASETLFVLDARNVVNIPCKSRIDCSDPWYCDCKVNLCFCHP-G 60
          M K  TKFA+  LM FI SE LFV DARNVVNIPC+SRIDCSDPW CDCK+NLCFCHP G
Sbjct: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 SEKKFLDKAFPEYLGEEK 78
           EKKFL KAFPE L E++
Sbjct: 61 LEKKFLHKAFPESLREDR 78

BLAST of HG10002772 vs. ExPASy TrEMBL
Match: A0A2N9FRQ0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17804 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.2e-09
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 0

Query: 1  MEKSSTKFAILLLMFFIASETLFVLDARNVVNIPCKSRIDCSDPWYCDCKVNLCFCHPGS 60
          MEKSS K A+++++  IAS   F +DARNVV IPC++  DC D   CDC  N C C PG 
Sbjct: 1  MEKSSLKLALIVVLLLIASSFQFRVDARNVVVIPCETYNDCRDSAKCDCVHNHCRC-PGE 60

Query: 61 EKKFLDKAFPEYL 74
          E+ F  KA   +L
Sbjct: 61 EQDFFTKAITNHL 72

BLAST of HG10002772 vs. ExPASy TrEMBL
Match: A0A3N7HLC3 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G021450 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.2e-05
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 0

Query: 1  MEKSSTKFAILLLMFFIASETLFVLDARNVVNIPCKSRIDCSDPWYCDCKVNLCFCHPGS 60
          MEKSS K A   ++   A+ T    +ARN +NIPCK+  +C    +C C +NLCFCHP  
Sbjct: 1  MEKSSMKMAFFAVLLVFAAGTQLGAEARN-INIPCKTVKNCVPAGHCKCIMNLCFCHPDE 60

Query: 61 E 62
          +
Sbjct: 61 Q 60

BLAST of HG10002772 vs. ExPASy TrEMBL
Match: A0A061GY75 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_039540 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.2e-05
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 0

Query: 1  MEKSSTKFAILLLMFFIASETLFVLDARNVVNIPCKSRIDCSDPWYCDCKVNLCFCHP 59
          MEK S K   L  +   A      ++ARN +N PC +  DC+DP  C+C++NLCFCHP
Sbjct: 1  MEKFSFKLIFLAALLVFALGLQVGVEARN-INTPCNTVKDCADPIKCECRINLCFCHP 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8651915.14.0e-2678.75hypothetical protein Csa_006059 [Cucumis sativus][more]
KGN61957.14.9e-2474.36hypothetical protein Csa_006779 [Cucumis sativus][more]
RQP00499.18.7e-0544.26hypothetical protein POPTR_015G021450 [Populus trichocarpa][more]
EOY32074.11.5e-0444.83Uncharacterized protein TCM_039540 [Theobroma cacao][more]
OMO57769.14.3e-0444.44ATP-binding/protein serine/threonine kinase [Corchorus olitorius][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJR02.3e-2781.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285280 PE=4 SV=1[more]
A0A0A0LMG32.4e-2474.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G276990 PE=4 SV=1[more]
A0A2N9FRQ06.2e-0949.32Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17804 PE=4 SV=1[more]
A0A3N7HLC34.2e-0544.26Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G021450 PE=4 ... [more]
A0A061GY757.2e-0544.83Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_039540 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10002772.1HG10002772.1mRNA