HG10012181 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10012181
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RING finger protein 165-like protein
Location	Chr01: 18473414 .. 18476271 (+)
RNA-Seq Expression	HG10012181
Synteny	HG10012181

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCATTGCTGTGTTTGTTACGAAGAATTGGATACTGAAGGGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAACTTGAGGAGGTGACTAGAATCGGGTGTGGTAATGTGTATCACAAATCGTGCATTCTTACTTGGGCTAAAAGGAAAAAATGTTGTCCTCTGTGCAGCAGGTAAATACACTTCGTGAGTTGGTTGAAACCTGATGAATTCGTTCGCCACCAAAGTTCAGAGGTTTGGAATATTAAGAAAGTAGCCTGGGAATGTGACTCAATTAGATTAGTAACATTTTAACAATCGGCTTTTTATCTTCTTTTCTACTTTTTTTTTTTTTAATCTTAAATTAAATTTGTGACATTTGTTAAAGGATTTGATTATAGGACACAAGGACTAAGTTTTAGGACTTTGTCAGTTGCGGTGCTTAACTTTAATAATTTTAAGTTATTTTAATCTATATGTTCTTGATTTTGGCATGTTATTTCAATGAGAGGTTGGTAATATTTGTTTAAGAGTATCATATGTCTCTCGGGATGAGGATCGTCGGCTTGCCTCGTATCTTGTGTAATATAGATTTGGATGTTCTCTTTCTGTTGGCAACATTTTGGTCAATTTGCACTCTTATTTGAGTGCATGTATTTTTGGAAGGTAGAGCTACTCATCAGGTCTTCGTTGTGCATATTTAAAGTGCGTTGTTCATTGATCAATCTTTTGAGAAGTGTTTATCAAGCTTAGGGAGAGCCTAAGTATATTGAGTGGAGTATTCTTTGTTCGAAGAGAAAAGATATTGTTTCTAATTGAGAGGGAGTCTCGATCTTAGAAGGAGTCTGAGATATTTTTTCATTGAAATAACTACTTAGAGGAACCTAAGTTACCAAGAGAGTGGATCTCTAATCTAGGGGACCCTAGATGCATGGTAGAGTATTTTTAAGCTATACACAAGTCACTATAGTCTTATAATTGATATTAGTGAAATTATCTTTCCTAGGCAATATATTCACCTCCCAATCGTAGGTGATTTACATCGAATTGGATTAGCAATATATTGTAACCTAGTTAGTAACATTAGTTATTGTGAGTAGGTATCCTCGTTGTGTGCTATTTGAGGCTTGATTATCATAATCACATTCTTTTTAGTGATTTTAAAAATTGTACATTTAGATTATCACACATAAAATTGATTTTAAAATCAGTATTTTAAAAAGTTATTGAGGCTTATGCCTCAAGGCGAAGGCCAAGCTCTAAGTTTTAGCCTCGAGACTTACGTAGAAGAGGCTTACGCCTTTGTGTTTATCTAATTCTTCAAAATTATTAAGGTTTGAGTTGTGACAATTTGAAATAGGATTAACTCTGATCTTGTGATTTTAAAGACATTGAAGGCAAAATTTATAGTATAAAACAATCCTATGTTATAATAGTGGTGGTAGTGATTATGCAAATATCCTTTTAGAATTTTTTATTGAGTGAAAATTGTAGGGTGGATTTTCTTTTAATACTTTTATATGACTATCATGTTTATTGTTCTTGATCATACCTATATTAATTTAAGATTTGTAAAATATTTTTAATTCACTATTTAAGGCTTACGTCACCTCAAGGCCTTTAGCCTTTTAAAACATTATTTAAACTTGATTATCATCTGATAAAATGATAATTTTTCTAGTGATTTTTCACTTTTCTAAGATTTAAAATAAGTTAAAAAGTATTTTTTTTTTAAGTGATTTTGCCCTAGATTGAAGAGCTTCAATGGGTACCCATACAACCAATACAAAAGCAATGGATTTAAGGCTAAGATTCGGAAAGATAAATGACTAAAACTGAAATCCCAAAAAAAAAATAAAATAAAATAATTAACTGAAATCCCAATAACAAAAAAAAAAAAAAAATTTCACACATAGAAAAAATGTCAAACTATTTTCTATAAGCATCTATCACAACTATTTAAAAATTTTGTTATTTTGTGTAAATAGTTTTATTTATTTTTTTTAAAAAAAGAAGTAATTAAATTATACTCAGACAAGAGTTGATGGTGTGGATTTGGAGCAGCAAATTTGGAGCTAAATGTTATTTTTATAAATATCCAATCAAGAAATCTTTTTTAAAAATAATTTTTTTTAAAAAAAAGGAAAAATCTTAGTCACTCCAAAATATCGAGGGCTTTCTCCATAGAAGGCCTCATTCTACGCCCATATTACAACATGTTTTTTTAATTCTATTTATTTCATAAATGGCCTAATTCATTTATCATTTACACGGATATTATAATTCATTTACAATTATACCCTCTTCTACATTTTTTTTATCTAAAAAAGGACCAAAAAGAAAAAAAAAAAATTATTTGTCTCGCATGCGCAATTAAGCATTTAAAAGTTCGAGGTAACCTAGGGTTTCGTACGTGTGAGAGAGATTAGGGTTTAAACTTCATCTTCTCTATTTGATATTCCCTCACATCTCTTCCTCTTCACTCTCTTTTTCTTCTTCCTGGCGGCATGGGGTGAATCGACGGCAACTGGGAAGTTAATGAGGCGAATCGGATGGCGAGTTGCAGGCAACGGGAGATGGATATTGGACGACAATGTGGGGCTAATCAACGGTGTTGGGTGAACAGATTCGGCACGAGGCATGATGGATCTGAGCGATGGGGAGGTTCTGGTAGGTCGACGCGTGCAAATCTGGGTGGCACAGGCGAATCAGGACGAACTCAAATAGTTGGCGACGGGAGAAGAATCGACGACATAACTATGCACGGATCTGGCGCCGATGAGACGACATCTGACAAAGCCGTGTGCGAAACTGAAGCAAAGGCTGGACAGATCGGCTTTATTTCAAATCATCCATATATATACTAG

mRNA sequence

ATGGGCCATTGCTGTGTTTGTTACGAAGAATTGGATACTGAAGGGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAACTTGAGGAGGTGACTAGAATCGGGTGTGGTAATGTGTATCACAAATCGTGCATTCTTACTTGGGCTAAAAGGAAAAAATGTTGTCCTCTGTGCAGCAGATTCGGCACGAGGCATGATGGATCTGAGCGATGGGGAGGTTCTGGTAGGTCGACGCGTGCAAATCTGGGTGGCACAGGCGAATCAGGACGAACTCAAATAGTTGGCGACGGGAGAAGAATCGACGACATAACTATGCACGGATCTGGCGCCGATGAGACGACATCTGACAAAGCCGTGTGCGAAACTGAAGCAAAGGCTGGACAGATCGGCTTTATTTCAAATCATCCATATATATACTAG

Coding sequence (CDS)

ATGGGCCATTGCTGTGTTTGTTACGAAGAATTGGATACTGAAGGGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAACTTGAGGAGGTGACTAGAATCGGGTGTGGTAATGTGTATCACAAATCGTGCATTCTTACTTGGGCTAAAAGGAAAAAATGTTGTCCTCTGTGCAGCAGATTCGGCACGAGGCATGATGGATCTGAGCGATGGGGAGGTTCTGGTAGGTCGACGCGTGCAAATCTGGGTGGCACAGGCGAATCAGGACGAACTCAAATAGTTGGCGACGGGAGAAGAATCGACGACATAACTATGCACGGATCTGGCGCCGATGAGACGACATCTGACAAAGCCGTGTGCGAAACTGAAGCAAAGGCTGGACAGATCGGCTTTATTTCAAATCATCCATATATATACTAG

Protein sequence

MGHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSRFGTRHDGSERWGGSGRSTRANLGGTGESGRTQIVGDGRRIDDITMHGSGADETTSDKAVCETEAKAGQIGFISNHPYIY

Homology

[Close]

BLAST of HG10012181 vs. NCBI nr
Match: XP_038905732.1 (E3 ubiquitin-protein ligase arkadia-A-like [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-07
Identity = 32/62 (51.61%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 1   MGHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLC 60
           +G CCVC EEL               +E  +EV+RIGCG+VYHKSCILTWA+    CPLC
Sbjct: 179 LGDCCVCCEEL---------------KEGKKEVSRIGCGHVYHKSCILTWAQNNDSCPLC 225

Query: 61  SR 63
            R
Sbjct: 239 RR 225

[Close]

BLAST of HG10012181 vs. NCBI nr
Match: KAA0052771.1 (RING finger protein 165-like protein [Cucumis melo var. makuwa] >TYK04185.1 RING finger protein 165-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-07
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 1   MGHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLC 60
           +G CCVCYEEL  +GEE             +EV+RIGCG+VYHKSCI+ W  R   CPLC
Sbjct: 166 LGDCCVCYEEL--KGEE-------------KEVSRIGCGHVYHKSCIINWVLRNDSCPLC 210

[Close]

BLAST of HG10012181 vs. NCBI nr
Match: XP_038876865.1 (putative RING-H2 finger protein ATL53 [Benincasa hispida])

HSP 1 Score: 65.5 bits (158), Expect = 4.3e-07
Identity = 30/62 (48.39%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 1   MGHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLC 60
           MG CCVCYEEL+               +  +EV+RI CG++YHKSCILTW + +  CPLC
Sbjct: 184 MGDCCVCYEELN---------------DVRKEVSRIRCGHIYHKSCILTWLQSRNSCPLC 230

Query: 61  SR 63
            R
Sbjct: 244 RR 230

[Close]

BLAST of HG10012181 vs. NCBI nr
Match: XP_011652885.1 (RING-H2 finger protein ATL66 [Cucumis sativus] >KGN60202.1 hypothetical protein Csa_002222 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 4.3e-07
Identity = 32/59 (54.24%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 2   GHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLC 61
           G CCVCYE+L+ E EEE+           EE TRI CG+VYHKSCIL W      CPLC
Sbjct: 163 GQCCVCYEDLNCEREEEK-----------EEATRIPCGHVYHKSCILKWLNVNNSCPLC 210

[Close]

BLAST of HG10012181 vs. NCBI nr
Match: XP_008466247.1 (PREDICTED: E3 ubiquitin-protein ligase synoviolin B-like [Cucumis melo] >KAA0038718.1 E3 ubiquitin-protein ligase synoviolin B-like [Cucumis melo var. makuwa] >TYK31330.1 E3 ubiquitin-protein ligase synoviolin B-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 5.6e-07
Identity = 33/59 (55.93%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 4   CCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSR 63
           CCVCYE+L+ E EEE+E          EEVTRI CG+VYHK CIL W      CPLC R
Sbjct: 167 CCVCYEDLNCEREEEKE----------EEVTRIPCGHVYHKYCILKWLNINNSCPLCRR 215

[Close]

BLAST of HG10012181 vs. ExPASy TrEMBL
Match: A0A5D3BYE9 (RING finger protein 165-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00110 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-07
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 1   MGHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLC 60
           +G CCVCYEEL  +GEE             +EV+RIGCG+VYHKSCI+ W  R   CPLC
Sbjct: 166 LGDCCVCYEEL--KGEE-------------KEVSRIGCGHVYHKSCIINWVLRNDSCPLC 210

[Close]

BLAST of HG10012181 vs. ExPASy TrEMBL
Match: A0A0A0LHI3 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.1e-07
Identity = 32/59 (54.24%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 2   GHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLC 61
           G CCVCYE+L+ E EEE+           EE TRI CG+VYHKSCIL W      CPLC
Sbjct: 163 GQCCVCYEDLNCEREEEK-----------EEATRIPCGHVYHKSCILKWLNVNNSCPLC 210

[Close]

BLAST of HG10012181 vs. ExPASy TrEMBL
Match: A0A5A7T784 (E3 ubiquitin-protein ligase synoviolin B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006300 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 33/59 (55.93%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 4   CCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSR 63
           CCVCYE+L+ E EEE+E          EEVTRI CG+VYHK CIL W      CPLC R
Sbjct: 167 CCVCYEDLNCEREEEKE----------EEVTRIPCGHVYHKYCILKWLNINNSCPLCRR 215

[Close]

BLAST of HG10012181 vs. ExPASy TrEMBL
Match: A0A1S3CR16 (E3 ubiquitin-protein ligase synoviolin B-like OS=Cucumis melo OX=3656 GN=LOC103503717 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 33/59 (55.93%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 4   CCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSR 63
           CCVCYE+L+ E EEE+E          EEVTRI CG+VYHK CIL W      CPLC R
Sbjct: 167 CCVCYEDLNCEREEEKE----------EEVTRIPCGHVYHKYCILKWLNINNSCPLCRR 215

[Close]

BLAST of HG10012181 vs. ExPASy TrEMBL
Match: A0A5A7UAN0 (RING finger protein 165-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00100 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 2   GHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCS 61
           G CC+C+EEL+          EE  E+  +EV R+ CG+VYHKSCIL W +R   CPLC 
Sbjct: 79  GDCCICWEELN----------EEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCR 129

Query: 62  R 63
           R
Sbjct: 139 R 129

[Close]

BLAST of HG10012181 vs. TAIR 10
Match: AT1G45180.1 (RING/U-box superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-05
Identity = 22/61 (36.07%), Postives = 30/61 (49.18%), Query Frame = 0


Query: 4   CCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLCSRF 63
           CCVC                +EE +E EE+ R+ CG+ +H  CI  W K+K  CP+C   
Sbjct: 592 CCVC----------------QEEYKEEEEIGRLECGHDFHSQCIKEWLKQKNLCPICKTT 636

Query: 64  G 65
           G
Sbjct: 652 G 636

[Close]

BLAST of HG10012181 vs. TAIR 10
Match: AT4G05350.1 (RING/U-box superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-05
Identity = 16/29 (55.17%), Postives = 21/29 (72.41%), Query Frame = 0


Query: 32  EVTRIGCGNVYHKSCILTWAKRKKCCPLC 61
           +VTR+ C +V+H  C+L W KRK  CPLC
Sbjct: 172 DVTRMTCSHVFHNGCLLEWLKRKNTCPLC 200

[Close]

BLAST of HG10012181 vs. TAIR 10
Match: AT4G12190.1 (RING/U-box superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.5e-05
Identity = 15/29 (51.72%), Postives = 21/29 (72.41%), Query Frame = 0


Query: 32 EVTRIGCGNVYHKSCILTWAKRKKCCPLC 61
          ++TR+ C +V+H  C+L W KRK  CPLC
Sbjct: 37 DITRMTCSHVFHNGCLLEWLKRKNTCPLC 65

[Close]

BLAST of HG10012181 vs. TAIR 10
Match: AT4G12140.1 (RING/U-box superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 5.6e-05
Identity = 14/27 (51.85%), Postives = 20/27 (74.07%), Query Frame = 0


Query: 34  TRIGCGNVYHKSCILTWAKRKKCCPLC 61
           TR+ C +V+H SC++ W KRK  CP+C
Sbjct: 169 TRMSCSHVFHSSCLVEWLKRKNTCPMC 195

[Close]

BLAST of HG10012181 vs. TAIR 10
Match: AT1G60360.1 (RING/U-box superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 2.8e-04
Identity = 19/62 (30.65%), Postives = 26/62 (41.94%), Query Frame = 0


Query: 1   MGHCCVCYEELDTEGEEEEEEEEEEEEEELEEVTRIGCGNVYHKSCILTWAKRKKCCPLC 60
           M  C VC EE    G                + T + C ++YHK CI+ W +    CP+C
Sbjct: 221 MSQCTVCMEEFIVGG----------------DATELPCKHIYHKDCIVPWLRLNNSCPIC 266

Query: 61  SR 63
            R
Sbjct: 281 RR 266

The following BLAST results are available for this feature:

BLAST of HG10012181 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905732.1	2.5e-07	51.61	E3 ubiquitin-protein ligase arkadia-A-like [Benincasa hispida]	[more]
KAA0052771.1	3.3e-07	53.33	RING finger protein 165-like protein [Cucumis melo var. makuwa] >TYK04185.1 RING...	[more]
XP_038876865.1	4.3e-07	48.39	putative RING-H2 finger protein ATL53 [Benincasa hispida]	[more]
XP_011652885.1	4.3e-07	54.24	RING-H2 finger protein ATL66 [Cucumis sativus] >KGN60202.1 hypothetical protein ...	[more]
XP_008466247.1	5.6e-07	55.93	PREDICTED: E3 ubiquitin-protein ligase synoviolin B-like [Cucumis melo] >KAA0038...	[more]

BLAST of HG10012181 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10012181 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BYE9	1.6e-07	53.33	RING finger protein 165-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0LHI3	2.1e-07	54.24	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889100 P...	[more]
A0A5A7T784	2.7e-07	55.93	E3 ubiquitin-protein ligase synoviolin B-like OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3CR16	2.7e-07	55.93	E3 ubiquitin-protein ligase synoviolin B-like OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A5A7UAN0	1.3e-06	49.18	RING finger protein 165-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of HG10012181 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G45180.1	1.9e-05	36.07	RING/U-box superfamily protein	[more]
AT4G05350.1	1.9e-05	55.17	RING/U-box superfamily protein	[more]
AT4G12190.1	2.5e-05	51.72	RING/U-box superfamily protein	[more]
AT4G12140.1	5.6e-05	51.85	RING/U-box superfamily protein	[more]
AT1G60360.1	2.8e-04	30.65	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 8..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..32
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 3..63
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 4..60 e-value: 6.7E-5 score: 32.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 4..61 score: 10.010774
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 1..130 e-value: 2.6E-10 score: 42.5
IPR024766	Zinc finger, RING-H2-type	PFAM	PF12678	zf-rbx1	coord: 3..60 e-value: 1.5E-7 score: 31.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10012181.1	HG10012181.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding