HG10018849 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10018849
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr04: 9621035 .. 9621313 (-)
RNA-Seq Expression	HG10018849
Synteny	HG10018849

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGTGGAGTTATTGGCAATGTGAACCATGAGACAAAGGATGGAAAGAAGGGTAATGTGTGGATCACATGGACACCAATTCCCAACGTTGAAGATCTGCTTGTGAAAATCATTGCAGAGTTCGCAGTGGCAGAATACAATAAGAAATACAAAAAGCAATGGAAATGTAAGCGCATTCAACAAGCTTGGTACTCAGTGATAATAGAGGAGAATCAAACTCAATATCGTTTCCATTTAGAGCAAGATGAAGTTCCTGAAGGAGATGAGAAAATATAA

mRNA sequence

ATGAGTTGTGGAGTTATTGGCAATGTGAACCATGAGACAAAGGATGGAAAGAAGGGTAATGTGTGGATCACATGGACACCAATTCCCAACGTTGAAGATCTGCTTGTGAAAATCATTGCAGAGTTCGCAGTGGCAGAATACAATAAGAAATACAAAAAGCAATGGAAATGTAAGCGCATTCAACAAGCTTGGTACTCAGTGATAATAGAGGAGAATCAAACTCAATATCGTTTCCATTTAGAGCAAGATGAAGTTCCTGAAGGAGATGAGAAAATATAA

Coding sequence (CDS)

ATGAGTTGTGGAGTTATTGGCAATGTGAACCATGAGACAAAGGATGGAAAGAAGGGTAATGTGTGGATCACATGGACACCAATTCCCAACGTTGAAGATCTGCTTGTGAAAATCATTGCAGAGTTCGCAGTGGCAGAATACAATAAGAAATACAAAAAGCAATGGAAATGTAAGCGCATTCAACAAGCTTGGTACTCAGTGATAATAGAGGAGAATCAAACTCAATATCGTTTCCATTTAGAGCAAGATGAAGTTCCTGAAGGAGATGAGAAAATATAA

Protein sequence

MSCGVIGNVNHETKDGKKGNVWITWTPIPNVEDLLVKIIAEFAVAEYNKKYKKQWKCKRIQQAWYSVIIEENQTQYRFHLEQDEVPEGDEKI

Homology

[Close]

BLAST of HG10018849 vs. NCBI nr
Match: KAG6571860.1 (hypothetical protein SDJN03_28588, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.5 bits (293), Expect = 6.2e-23
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 4  GVIGNVNHETKDGKKGNVWITWTPIPNVEDLLVKIIAEFAVAEYNKKYKKQWKCKRIQQA 63
          G   ++NH+  D KKG VWITWT I NVE+  V+ IA+FAV EYNKKYKKQWKCKRIQQ 
Sbjct: 10 GQSNDINHDMIDAKKGFVWITWTSIHNVEEANVQEIAKFAVEEYNKKYKKQWKCKRIQQG 69

Query: 64 WYSVIIEENQTQYRFHLEQDEVPEGDEKI 93
          WYSV+  +++TQYRF LEQD+V  GD+++
Sbjct: 70 WYSVM--KDETQYRFLLEQDDVRPGDQQV 96

[Close]

BLAST of HG10018849 vs. NCBI nr
Match: KAE8645820.1 (hypothetical protein Csa_017234 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 2.0e-21
Identity = 58/93 (62.37%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1  MSCGVIGNVNHETK-DGKKGNVWITWTPIPNVEDLLVKIIAEFAVAEYNKKYKKQWKCKR 60
          MSCG +    HETK D KKG V ITWTPIPN+E+  V+ + +F V EYNK YKK WK K+
Sbjct: 1  MSCGSV-TAKHETKEDEKKGYVSITWTPIPNLEEPHVQEVVKFGVEEYNKIYKKHWKLKQ 60

Query: 61 IQQAWYSVIIEENQTQYRFHLEQDEVPEGDEKI 93
          +QQ WYS +I+  QTQYRF LEQD+VP GDEKI
Sbjct: 61 VQQGWYS-LIDGTQTQYRFLLEQDQVPPGDEKI 91

The following BLAST results are available for this feature:

BLAST of HG10018849 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571860.1	6.2e-23	62.92	hypothetical protein SDJN03_28588, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8645820.1	2.0e-21	62.37	hypothetical protein Csa_017234 [Cucumis sativus]	[more]

BLAST of HG10018849 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10018849 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10018849 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.10		coord: 16..91 e-value: 1.8E-8 score: 36.4
None	No IPR available	SUPERFAMILY	54403	Cystatin/monellin	coord: 25..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10018849.1	HG10018849.1	mRNA