HG10004412 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004412
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Mitochondrial transcription termination factor family protein
Location	Chr08: 16728079 .. 16729221 (-)
RNA-Seq Expression	HG10004412
Synteny	HG10004412

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAATTTTATGCTCAAACCTCCTCTGCGTCTCTTTGCTCAAGACCTCCGGAAGTTCACAGAGAACGGCACCACAATTGGCCTCAAATTCCTCTCTTCTCTCACTCAAATCCCTCAATCAACCAACGATCGGACAGTCGATTACCTCGTCCACACCCTCGGCCTCTCCAAGGACTCAGCTCTCGCCGCTGCCAAGCGAATCCATCTCAAACCAACCGCAGATCCCGACTCCGTTCTTGCTCTCTTCAACGCCCATGGATTCACACCCTCCCACACTGCCAGCATCTTTTACAGACACCCCAGTCTCCTCCTTGCTGATCCCGACACAACACTCAAGCCCAAGTTCGAATTTCTCTCTCAAAACGGTATATCTGGTAATGTTCTCGTCGACGTGATCTCTAGGGATCCATCAATTCTCAGAAGGAGCTTGGACAAGCAGATTGTTCCATGTATTGATTTTCTCAGAAATTTCTTTGGTTCTACTGATGGTATTGTCTCGCTCTTTTCTACTAGACGTGGGACTTGGGTTTTGCGCCAGTTTTCCGAATCTGTGGCTCCCAATATAGAAGTACTGAGAGCTAATGGTGTGCCCGATTCAAACATTGCTAAAATGATTTTGTTGCGCCCGAGGACACTCTCCAGGGATGCGGAAGAGTTTATTGACATTGTCAAGAAGACAAAGGAAACGGGGTTTAATCCTTCGAGCTTGATGTTTATTCATGGGCTGTGTACACTTTCAGGGATGAGAAAGGACAAATGGTTATCGAAACTGCATATTTTTAAAAGTTTTGGATGGTCAGAGGAGCAGTTTCAATCTTTATTTCTCAAGCAGCCCATGTTTATGAATTCGTCTGGGGAGCAAATTAAGAGGGCATTGGATTTCTTTATGAACAAATTAGACTGGACACCGGAAGAAATTTCCAAGTACCCAACTGTGCTCATTCTTAGTTTTGAAAAGAGGATAATGCCGAGGTCGTCTATCCTTCAGCACCTGATATCAAAAGGTTTTATCAAGAAGACGAGTGTTGGCAGAGCATTTTTGATTTGCGAGGATGAGTTCTTGGTCAAGTTTGTGATGCAGTATCTTTCAGAAGATCCCCATCTATTAAAGATGTACCAGGAGAAGATGGCAATATTATGA

mRNA sequence

ATGGGGAATTTTATGCTCAAACCTCCTCTGCGTCTCTTTGCTCAAGACCTCCGGAAGTTCACAGAGAACGGCACCACAATTGGCCTCAAATTCCTCTCTTCTCTCACTCAAATCCCTCAATCAACCAACGATCGGACAGTCGATTACCTCGTCCACACCCTCGGCCTCTCCAAGGACTCAGCTCTCGCCGCTGCCAAGCGAATCCATCTCAAACCAACCGCAGATCCCGACTCCGTTCTTGCTCTCTTCAACGCCCATGGATTCACACCCTCCCACACTGCCAGCATCTTTTACAGACACCCCAGTCTCCTCCTTGCTGATCCCGACACAACACTCAAGCCCAAGTTCGAATTTCTCTCTCAAAACGGTATATCTGGTAATGTTCTCGTCGACGTGATCTCTAGGGATCCATCAATTCTCAGAAGGAGCTTGGACAAGCAGATTGTTCCATGTATTGATTTTCTCAGAAATTTCTTTGGTTCTACTGATGGTATTGTCTCGCTCTTTTCTACTAGACGTGGGACTTGGGTTTTGCGCCAGTTTTCCGAATCTGTGGCTCCCAATATAGAAGTACTGAGAGCTAATGGTGTGCCCGATTCAAACATTGCTAAAATGATTTTGTTGCGCCCGAGGACACTCTCCAGGGATGCGGAAGAGTTTATTGACATTGTCAAGAAGACAAAGGAAACGGGGTTTAATCCTTCGAGCTTGATGTTTATTCATGGGCTGTGTACACTTTCAGGGATGAGAAAGGACAAATGGTTATCGAAACTGCATATTTTTAAAAGTTTTGGATGGTCAGAGGAGCAGTTTCAATCTTTATTTCTCAAGCAGCCCATGTTTATGAATTCGTCTGGGGAGCAAATTAAGAGGGCATTGGATTTCTTTATGAACAAATTAGACTGGACACCGGAAGAAATTTCCAAGTACCCAACTGTGCTCATTCTTAGTTTTGAAAAGAGGATAATGCCGAGGTCGTCTATCCTTCAGCACCTGATATCAAAAGGTTTTATCAAGAAGACGAGTGTTGGCAGAGCATTTTTGATTTGCGAGGATGAGTTCTTGGTCAAGTTTGTGATGCAGTATCTTTCAGAAGATCCCCATCTATTAAAGATGTACCAGGAGAAGATGGCAATATTATGA

Coding sequence (CDS)

ATGGGGAATTTTATGCTCAAACCTCCTCTGCGTCTCTTTGCTCAAGACCTCCGGAAGTTCACAGAGAACGGCACCACAATTGGCCTCAAATTCCTCTCTTCTCTCACTCAAATCCCTCAATCAACCAACGATCGGACAGTCGATTACCTCGTCCACACCCTCGGCCTCTCCAAGGACTCAGCTCTCGCCGCTGCCAAGCGAATCCATCTCAAACCAACCGCAGATCCCGACTCCGTTCTTGCTCTCTTCAACGCCCATGGATTCACACCCTCCCACACTGCCAGCATCTTTTACAGACACCCCAGTCTCCTCCTTGCTGATCCCGACACAACACTCAAGCCCAAGTTCGAATTTCTCTCTCAAAACGGTATATCTGGTAATGTTCTCGTCGACGTGATCTCTAGGGATCCATCAATTCTCAGAAGGAGCTTGGACAAGCAGATTGTTCCATGTATTGATTTTCTCAGAAATTTCTTTGGTTCTACTGATGGTATTGTCTCGCTCTTTTCTACTAGACGTGGGACTTGGGTTTTGCGCCAGTTTTCCGAATCTGTGGCTCCCAATATAGAAGTACTGAGAGCTAATGGTGTGCCCGATTCAAACATTGCTAAAATGATTTTGTTGCGCCCGAGGACACTCTCCAGGGATGCGGAAGAGTTTATTGACATTGTCAAGAAGACAAAGGAAACGGGGTTTAATCCTTCGAGCTTGATGTTTATTCATGGGCTGTGTACACTTTCAGGGATGAGAAAGGACAAATGGTTATCGAAACTGCATATTTTTAAAAGTTTTGGATGGTCAGAGGAGCAGTTTCAATCTTTATTTCTCAAGCAGCCCATGTTTATGAATTCGTCTGGGGAGCAAATTAAGAGGGCATTGGATTTCTTTATGAACAAATTAGACTGGACACCGGAAGAAATTTCCAAGTACCCAACTGTGCTCATTCTTAGTTTTGAAAAGAGGATAATGCCGAGGTCGTCTATCCTTCAGCACCTGATATCAAAAGGTTTTATCAAGAAGACGAGTGTTGGCAGAGCATTTTTGATTTGCGAGGATGAGTTCTTGGTCAAGTTTGTGATGCAGTATCTTTCAGAAGATCCCCATCTATTAAAGATGTACCAGGAGAAGATGGCAATATTATGA

Protein sequence

MGNFMLKPPLRLFAQDLRKFTENGTTIGLKFLSSLTQIPQSTNDRTVDYLVHTLGLSKDSALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFLSQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLRQFSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMFIHGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNKLDWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAFLICEDEFLVKFVMQYLSEDPHLLKMYQEKMAIL

Homology

[Close]

BLAST of HG10004412 vs. NCBI nr
Match: XP_022132136.1 (transcription termination factor MTERF8, chloroplastic-like [Momordica charantia])

HSP 1 Score: 639.8 bits (1649), Expect = 1.5e-179
Identity = 320/380 (84.21%), Postives = 348/380 (91.58%), Query Frame = 0


Query: 1   MGNFMLKPPLRLFAQDLRKFTENGTTIGLKFLSSLTQIPQSTNDRTVDYLVHTLGLSKDS 60
           M NF+ K PLRL A+DLRKFT+N  +IGL   SSL+QI QSTN+RTVDYLV TLGLSKDS
Sbjct: 1   MSNFLFKAPLRLLARDLRKFTDNSISIGLNSFSSLSQISQSTNNRTVDYLVRTLGLSKDS 60

Query: 61  ALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFLS 120
           A+A AKRIHLK TA+PDSV+ALF A+GF PS+TASIF R+PSLLLADPDTTLKPK EFLS
Sbjct: 61  AVAVAKRIHLKRTANPDSVIALFEAYGFAPSNTASIFCRNPSLLLADPDTTLKPKLEFLS 120

Query: 121 QNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLRQ 180
           QNG+SG VLVDVISRDPSILRRSLDKQI+PCIDFLRNFFGSTDGIVSLFS RRGTWVL +
Sbjct: 121 QNGVSGQVLVDVISRDPSILRRSLDKQIIPCIDFLRNFFGSTDGIVSLFSARRGTWVLHK 180

Query: 181 FSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMFI 240
           FSESVAPNIE LRA GVPDSNIAKMI +RPRTLSRDAE FIDIV+KTKE GFNPSSLMFI
Sbjct: 181 FSESVAPNIERLRAYGVPDSNIAKMIWVRPRTLSRDAEGFIDIVEKTKEAGFNPSSLMFI 240

Query: 241 HGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNKL 300
           +GLCT SGM+KDKWLSKL +FKSFGWSEEQFQSLFLKQP FMNSS EQIKRALDFFMNKL
Sbjct: 241 YGLCTFSGMKKDKWLSKLQVFKSFGWSEEQFQSLFLKQPKFMNSSEEQIKRALDFFMNKL 300

Query: 301 DWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAFLICEDEFLVKFVM 360
           DWTPEEISKYP VL LSFEKR++PRSSILQHLISKGFIKKTSVG+AF+I ED+FLVKFVM
Sbjct: 301 DWTPEEISKYPIVLFLSFEKRVIPRSSILQHLISKGFIKKTSVGKAFMIREDKFLVKFVM 360

Query: 361 QYLSEDPHLLKMYQEKMAIL 381
           QYLS+DPHLL+MYQ+KMAIL
Sbjct: 361 QYLSKDPHLLEMYQKKMAIL 380

[Close]

BLAST of HG10004412 vs. NCBI nr
Match: XP_022951071.1 (uncharacterized protein LOC111454030 [Cucurbita moschata])

HSP 1 Score: 625.2 bits (1611), Expect = 3.8e-175
Identity = 314/380 (82.63%), Postives = 343/380 (90.26%), Query Frame = 0


Query: 1   MGNFMLKPPLRLFAQDLRKFTENGTTIGLKFLSSLTQIPQSTNDRTVDYLVHTLGLSKDS 60
           M NF+ K PLRLFAQDL+KF  N TTI  KFLSSL+++ +STN+RTVDYLVHTLG SKDS
Sbjct: 1   MTNFLFKLPLRLFAQDLQKFAGNDTTISRKFLSSLSEVSESTNNRTVDYLVHTLGFSKDS 60

Query: 61  ALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFLS 120
           AL AAKRIHLKPTA+PDSV+ALF A+GFT S TASIF R+P+LLLADPDTTLKPKFEFLS
Sbjct: 61  ALVAAKRIHLKPTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTTLKPKFEFLS 120

Query: 121 QNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLRQ 180
           +NG +G+VLVDVISRDPSILRRSL KQIVPCID LRNFFGST+GIVSLFS RRGTWVLR 
Sbjct: 121 RNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDLLRNFFGSTNGIVSLFSNRRGTWVLRN 180

Query: 181 FSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMFI 240
           FSESVAPNIE+LRANGVPDSNIAKMI +RPRTL+RDAEEF DIV+KTKE GFNPSS MFI
Sbjct: 181 FSESVAPNIELLRANGVPDSNIAKMIWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMFI 240

Query: 241 HGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNKL 300
            GLCTL GM+KDKWLSKLHIF SFGWSEEQFQSLF KQP  MNSS EQIKRALDFFMNKL
Sbjct: 241 DGLCTLLGMKKDKWLSKLHIFTSFGWSEEQFQSLFRKQPTIMNSSEEQIKRALDFFMNKL 300

Query: 301 DWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAFLICEDEFLVKFVM 360
           DWT EEISKYP VL LSFEKR++PRSSILQHLISKGFIKKTS GRAF+I ED+FL KFV+
Sbjct: 301 DWTHEEISKYPNVLHLSFEKRVVPRSSILQHLISKGFIKKTSFGRAFMISEDKFLFKFVI 360

Query: 361 QYLSEDPHLLKMYQEKMAIL 381
           QYLSEDPHLL+MYQ+KMA+L
Sbjct: 361 QYLSEDPHLLEMYQKKMAVL 380

[Close]

BLAST of HG10004412 vs. NCBI nr
Match: XP_022951072.1 (uncharacterized protein LOC111454031 [Cucurbita moschata] >XP_022951073.1 uncharacterized protein LOC111454031 [Cucurbita moschata])

HSP 1 Score: 622.1 bits (1603), Expect = 3.2e-174
Identity = 309/380 (81.32%), Postives = 343/380 (90.26%), Query Frame = 0


Query: 1   MGNFMLKPPLRLFAQDLRKFTENGTTIGLKFLSSLTQIPQSTNDRTVDYLVHTLGLSKDS 60
           M NF+ K PLRLFAQDL+KF  N TTI  KFLSSL++I QSTN+RTVDYLVHTLG SKDS
Sbjct: 1   MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS 60

Query: 61  ALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFLS 120
           ALAAAKRIHLK TA+PDSV+ALF A+GFT S TASIF RHP+LLLADPDT LKPKFEFLS
Sbjct: 61  ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKFEFLS 120

Query: 121 QNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLRQ 180
           +NG +G+VLVDVISRDPSILRRSL KQIVPCIDFLRNFFGSTDG+VSLFS RRGTWVLR+
Sbjct: 121 RNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGVVSLFSARRGTWVLRK 180

Query: 181 FSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMFI 240
           F+ESVAPNIE+LRANGVPDSNIAK+  +RPRTL+R+AEEF DIV+KTKE GFNPSS MF 
Sbjct: 181 FTESVAPNIELLRANGVPDSNIAKIFWMRPRTLARNAEEFSDIVEKTKEAGFNPSSPMFT 240

Query: 241 HGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNKL 300
           +GLCT  GM+KDKWLSKLHIF SFGWSEEQFQSLFLKQP  MNSS EQIK+ALDF MNKL
Sbjct: 241 YGLCTFLGMKKDKWLSKLHIFTSFGWSEEQFQSLFLKQPTIMNSSEEQIKKALDFLMNKL 300

Query: 301 DWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAFLICEDEFLVKFVM 360
           DWT EEISKYP VL LSFEKR++PRSSILQHL+SKGFIKKT+ GRAF++ ED+FLVKFVM
Sbjct: 301 DWTHEEISKYPNVLYLSFEKRVVPRSSILQHLMSKGFIKKTNFGRAFMLSEDKFLVKFVM 360

Query: 361 QYLSEDPHLLKMYQEKMAIL 381
           QYLSEDPHLL+MYQ+KMA+L
Sbjct: 361 QYLSEDPHLLEMYQKKMAVL 380

[Close]

BLAST of HG10004412 vs. NCBI nr
Match: XP_023537744.1 (uncharacterized protein LOC111798676 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 620.9 bits (1600), Expect = 7.1e-174
Identity = 315/380 (82.89%), Postives = 339/380 (89.21%), Query Frame = 0


Query: 1   MGNFMLKPPLRLFAQDLRKFTENGTTIGLKFLSSLTQIPQSTNDRTVDYLVHTLGLSKDS 60
           M NF+ K PLRLFAQDL+KF  N TTI  KFLSSL++I +STN+RTVDYLVHTLG SKDS
Sbjct: 1   MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISESTNNRTVDYLVHTLGFSKDS 60

Query: 61  ALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFLS 120
           ALAAAKRIHLK TA+PDSV+ALF A+GFT S TASIF R+P+LLLADPDTTLKPKFEFLS
Sbjct: 61  ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTTLKPKFEFLS 120

Query: 121 QNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLRQ 180
           +NG +G+VLVDVISRDPSILRRSL KQIVPCID LR FFGSTDGIVSLFS R GTWVLR 
Sbjct: 121 RNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDLLRIFFGSTDGIVSLFSARGGTWVLRN 180

Query: 181 FSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMFI 240
           FSESVAPNIE+LRANGVPDSNIAKMI LRPRTL+RDAEEF DIV+KTKE GFNPSS MFI
Sbjct: 181 FSESVAPNIELLRANGVPDSNIAKMIWLRPRTLARDAEEFSDIVEKTKEAGFNPSSSMFI 240

Query: 241 HGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNKL 300
            GLCT  GM+KDKWLSKLHIF SFGWSEEQFQSLF KQP  MNSS EQIKRALDFFMNKL
Sbjct: 241 DGLCTFLGMKKDKWLSKLHIFTSFGWSEEQFQSLFRKQPKIMNSSEEQIKRALDFFMNKL 300

Query: 301 DWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAFLICEDEFLVKFVM 360
           DWT EEI KYP VL LSFEKR++PRSSILQHLISKGFIKKTS GRAF I ED+FLVKFVM
Sbjct: 301 DWTHEEICKYPNVLHLSFEKRVVPRSSILQHLISKGFIKKTSFGRAFFITEDKFLVKFVM 360

Query: 361 QYLSEDPHLLKMYQEKMAIL 381
           QYLSEDPHLL+MYQ+KMA+L
Sbjct: 361 QYLSEDPHLLEMYQKKMAVL 380

[Close]

BLAST of HG10004412 vs. NCBI nr
Match: XP_022951074.1 (uncharacterized protein LOC111454032 [Cucurbita moschata] >XP_022951075.1 uncharacterized protein LOC111454032 [Cucurbita moschata] >XP_022951076.1 uncharacterized protein LOC111454032 [Cucurbita moschata])

HSP 1 Score: 616.3 bits (1588), Expect = 1.8e-172
Identity = 309/380 (81.32%), Postives = 343/380 (90.26%), Query Frame = 0


Query: 1   MGNFMLKPPLRLFAQDLRKFTENGTTIGLKFLSSLTQIPQSTNDRTVDYLVHTLGLSKDS 60
           M NF+ K PLRLFAQDL+KF  N TTI  KFLSSL++I QSTN+RTVDYLVHTLG SKDS
Sbjct: 1   MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS 60

Query: 61  ALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFLS 120
           ALAAAKRIHLK TA+PDSV+ALF A+GFT S TASIF R+P+LLLADPDT LKPKFEFLS
Sbjct: 61  ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFLS 120

Query: 121 QNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLRQ 180
           +NG +G+VLV+VISRDP ILRRSL KQIVPCIDFLR FFGSTD IVSLFS RRGTWVLR+
Sbjct: 121 RNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWVLRK 180

Query: 181 FSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMFI 240
           FSESVAPNIE+LRANGVPDS IAK+  +RPRTL+RDAEEF DIV+KTKE GFNPSS MFI
Sbjct: 181 FSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMFI 240

Query: 241 HGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNKL 300
           +GLCT SGM+KDKWLSKLHIF SFGWS+EQFQSLFLKQP FMNSS E+IKRALDFFMNKL
Sbjct: 241 YGLCTFSGMKKDKWLSKLHIFTSFGWSKEQFQSLFLKQPTFMNSSEEKIKRALDFFMNKL 300

Query: 301 DWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAFLICEDEFLVKFVM 360
           DWT EEIS+YP VL LSFEKR++PRSSILQHL+SKGFIKKTS GRAF++ ED+FLVKFVM
Sbjct: 301 DWTHEEISRYPIVLYLSFEKRVVPRSSILQHLMSKGFIKKTSFGRAFMLSEDKFLVKFVM 360

Query: 361 QYLSEDPHLLKMYQEKMAIL 381
           QYLSEDPHLL+MYQ+KMA+L
Sbjct: 361 QYLSEDPHLLEMYQKKMAVL 380

[Close]

BLAST of HG10004412 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.4e-09
Identity = 65/280 (23.21%), Postives = 117/280 (41.79%), Query Frame = 0


Query: 78  SVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFLSQ-NGISGNVLVDVISRD 137
           S++  F   GF       +  +   L  A  D      +++LS   GI    L  ++SR 
Sbjct: 8   SIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVA-SENWDYLSNIVGIQERKLPYIVSRC 67

Query: 138 PSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLRQFSESVAPNIEVLRANG 197
           P IL   LD++++P ++ L +  G     V+   T+    +     E + P +   +A G
Sbjct: 68  PKILTLRLDERLIPMVECLSS-LGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALG 127

Query: 198 VPDSNIAKMILLRPRTLSRDAE-EFIDIVKKTKETGFNPSSLM--FIHGLCTLSGMRKDK 257
           VP++ + KMIL  PR +S   + +   IV      G +   ++   +     L G   DK
Sbjct: 128 VPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDK 187

Query: 258 WLSKLHIF--KSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNKLDWTPEEISK-- 317
            L     F   S G SE+  +S+ +  P  +     +I +    ++ +  +   +I+   
Sbjct: 188 RLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMV 247

Query: 318 --YPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAF 348
             YP +LI S +  + PR   L  ++ +G  +  S    F
Sbjct: 248 TGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFF 285

[Close]

BLAST of HG10004412 vs. ExPASy Swiss-Prot
Match: Q9FK23 (Transcription termination factor MTERF8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF8 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.5e-06
Identity = 63/296 (21.28%), Postives = 119/296 (40.20%), Query Frame = 0


Query: 36  TQIPQSTNDRTVDYLVHTLGLSKDSALAAAKRIHLKPTADPDSVLALFNAHGF-TPSHTA 95
           T I  S N +    L+H  G+ K+       +++L       SV  +     F  P    
Sbjct: 175 TSILLSFNQKVRLLLLH--GIPKEKISHVLNKVYLNKLLYQKSVEDIERLISFLEPFGGI 234

Query: 96  SIFYRHPSLLLADPDTTLKPKFEFL-SQNGISGNVLVDVISRDPSILRRSLDKQIVPCID 155
            I  R P +L +D D+ L P+ +F+ + +G        V+ R P+IL  S++  +   ++
Sbjct: 235 GIIARRPVILNSDLDSQLIPRVDFIRNLSGEDDFATGTVLRRLPAILSYSVE-HMNGQVE 294

Query: 156 FLRNFFGSTD----GIVSLFSTRRGTWVLRQFSESVAPNIEVLRANGVPDSNIAKMILLR 215
           FL++F G T      IV +F     T   R+    + P IE L+  G     + K +   
Sbjct: 295 FLKSFAGLTSEQVFKIVHVFPNVISTSKERK----LRPRIEFLKECGFDSPGMFKFLSKA 354

Query: 216 PRTLSRDAEEFIDIVKKTKETGFNPSSLMFIHGLCTLSGMRKDKWLSKLHIFKSFGWSEE 275
           P  L+         +    + G+   +      +  ++    D     + ++ S+G S E
Sbjct: 355 PLILALSENNLSHKLGFLVKIGYKHRTKELAFAMGAVTRTSSDNMQRVIGLYLSYGLSFE 414

Query: 276 QFQSLFLKQPMFMNSSGEQIKRALDFFMNKLDWTPEEISKYPTVLILSFEKRIMPR 326
              ++  K P  +  +   ++  L++ +  +    EE+  +P  L    + RI  R
Sbjct: 415 DILAMSTKHPQVLQYNYTSLEEKLEYLIEYMGREVEELLAFPAFLGYKLDSRIKHR 463

[Close]

BLAST of HG10004412 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 3.0e-05
Identity = 50/227 (22.03%), Postives = 93/227 (40.97%), Query Frame = 0


Query: 109 DTTLKPKFEFLSQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSL 168
           D  +KP  EFL   GI  + +  ++ + P I   SL   + P + FL       +    +
Sbjct: 229 DGKIKPVVEFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKI 288

Query: 169 FSTRRGTWVLRQFSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTK 228
            S  R   +L    + +   +E L   G+ +  I +++   P  +S   E   D ++ T 
Sbjct: 289 IS--RFPAILTYSRQKLTSTVEFLSQTGLTEEQIGRILTRCPNIMSYSVE---DKLRPTM 348

Query: 229 E--TGFNPSSLMFIHGLCTLSGMRKD---KWLSKLHIFKSFGWSEEQFQSLFLKQPMFMN 288
           E     N    + +H      G+  +   K +++  + K FG  E     +     ++  
Sbjct: 349 EYFRSLNVDVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIM-ISRYGALYTF 408

Query: 289 SSGEQIKRALDFFMNKLDWTPEEISKYPTVLILSFEKRIMPRSSILQ 331
           S  E +    D+F   +D+   E+ K+P     S ++RI PR  ++Q
Sbjct: 409 SLKENVMPKWDYFQT-MDYPKSELVKFPQFFGYSLQERIKPRYELVQ 448

[Close]

BLAST of HG10004412 vs. ExPASy TrEMBL
Match: A0A6J1BRE6 (transcription termination factor MTERF8, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111005076 PE=3 SV=1)

HSP 1 Score: 639.8 bits (1649), Expect = 7.2e-180
Identity = 320/380 (84.21%), Postives = 348/380 (91.58%), Query Frame = 0


Query: 1   MGNFMLKPPLRLFAQDLRKFTENGTTIGLKFLSSLTQIPQSTNDRTVDYLVHTLGLSKDS 60
           M NF+ K PLRL A+DLRKFT+N  +IGL   SSL+QI QSTN+RTVDYLV TLGLSKDS
Sbjct: 1   MSNFLFKAPLRLLARDLRKFTDNSISIGLNSFSSLSQISQSTNNRTVDYLVRTLGLSKDS 60

Query: 61  ALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFLS 120
           A+A AKRIHLK TA+PDSV+ALF A+GF PS+TASIF R+PSLLLADPDTTLKPK EFLS
Sbjct: 61  AVAVAKRIHLKRTANPDSVIALFEAYGFAPSNTASIFCRNPSLLLADPDTTLKPKLEFLS 120

Query: 121 QNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLRQ 180
           QNG+SG VLVDVISRDPSILRRSLDKQI+PCIDFLRNFFGSTDGIVSLFS RRGTWVL +
Sbjct: 121 QNGVSGQVLVDVISRDPSILRRSLDKQIIPCIDFLRNFFGSTDGIVSLFSARRGTWVLHK 180

Query: 181 FSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMFI 240
           FSESVAPNIE LRA GVPDSNIAKMI +RPRTLSRDAE FIDIV+KTKE GFNPSSLMFI
Sbjct: 181 FSESVAPNIERLRAYGVPDSNIAKMIWVRPRTLSRDAEGFIDIVEKTKEAGFNPSSLMFI 240

Query: 241 HGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNKL 300
           +GLCT SGM+KDKWLSKL +FKSFGWSEEQFQSLFLKQP FMNSS EQIKRALDFFMNKL
Sbjct: 241 YGLCTFSGMKKDKWLSKLQVFKSFGWSEEQFQSLFLKQPKFMNSSEEQIKRALDFFMNKL 300

Query: 301 DWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAFLICEDEFLVKFVM 360
           DWTPEEISKYP VL LSFEKR++PRSSILQHLISKGFIKKTSVG+AF+I ED+FLVKFVM
Sbjct: 301 DWTPEEISKYPIVLFLSFEKRVIPRSSILQHLISKGFIKKTSVGKAFMIREDKFLVKFVM 360

Query: 361 QYLSEDPHLLKMYQEKMAIL 381
           QYLS+DPHLL+MYQ+KMAIL
Sbjct: 361 QYLSKDPHLLEMYQKKMAIL 380

[Close]

BLAST of HG10004412 vs. ExPASy TrEMBL
Match: A0A6J1GGI9 (uncharacterized protein LOC111454030 OS=Cucurbita moschata OX=3662 GN=LOC111454030 PE=3 SV=1)

HSP 1 Score: 625.2 bits (1611), Expect = 1.8e-175
Identity = 314/380 (82.63%), Postives = 343/380 (90.26%), Query Frame = 0


Query: 1   MGNFMLKPPLRLFAQDLRKFTENGTTIGLKFLSSLTQIPQSTNDRTVDYLVHTLGLSKDS 60
           M NF+ K PLRLFAQDL+KF  N TTI  KFLSSL+++ +STN+RTVDYLVHTLG SKDS
Sbjct: 1   MTNFLFKLPLRLFAQDLQKFAGNDTTISRKFLSSLSEVSESTNNRTVDYLVHTLGFSKDS 60

Query: 61  ALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFLS 120
           AL AAKRIHLKPTA+PDSV+ALF A+GFT S TASIF R+P+LLLADPDTTLKPKFEFLS
Sbjct: 61  ALVAAKRIHLKPTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTTLKPKFEFLS 120

Query: 121 QNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLRQ 180
           +NG +G+VLVDVISRDPSILRRSL KQIVPCID LRNFFGST+GIVSLFS RRGTWVLR 
Sbjct: 121 RNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDLLRNFFGSTNGIVSLFSNRRGTWVLRN 180

Query: 181 FSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMFI 240
           FSESVAPNIE+LRANGVPDSNIAKMI +RPRTL+RDAEEF DIV+KTKE GFNPSS MFI
Sbjct: 181 FSESVAPNIELLRANGVPDSNIAKMIWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMFI 240

Query: 241 HGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNKL 300
            GLCTL GM+KDKWLSKLHIF SFGWSEEQFQSLF KQP  MNSS EQIKRALDFFMNKL
Sbjct: 241 DGLCTLLGMKKDKWLSKLHIFTSFGWSEEQFQSLFRKQPTIMNSSEEQIKRALDFFMNKL 300

Query: 301 DWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAFLICEDEFLVKFVM 360
           DWT EEISKYP VL LSFEKR++PRSSILQHLISKGFIKKTS GRAF+I ED+FL KFV+
Sbjct: 301 DWTHEEISKYPNVLHLSFEKRVVPRSSILQHLISKGFIKKTSFGRAFMISEDKFLFKFVI 360

Query: 361 QYLSEDPHLLKMYQEKMAIL 381
           QYLSEDPHLL+MYQ+KMA+L
Sbjct: 361 QYLSEDPHLLEMYQKKMAVL 380

[Close]

BLAST of HG10004412 vs. ExPASy TrEMBL
Match: A0A6J1GGM9 (uncharacterized protein LOC111454031 OS=Cucurbita moschata OX=3662 GN=LOC111454031 PE=3 SV=1)

HSP 1 Score: 622.1 bits (1603), Expect = 1.6e-174
Identity = 309/380 (81.32%), Postives = 343/380 (90.26%), Query Frame = 0


Query: 1   MGNFMLKPPLRLFAQDLRKFTENGTTIGLKFLSSLTQIPQSTNDRTVDYLVHTLGLSKDS 60
           M NF+ K PLRLFAQDL+KF  N TTI  KFLSSL++I QSTN+RTVDYLVHTLG SKDS
Sbjct: 1   MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS 60

Query: 61  ALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFLS 120
           ALAAAKRIHLK TA+PDSV+ALF A+GFT S TASIF RHP+LLLADPDT LKPKFEFLS
Sbjct: 61  ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKFEFLS 120

Query: 121 QNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLRQ 180
           +NG +G+VLVDVISRDPSILRRSL KQIVPCIDFLRNFFGSTDG+VSLFS RRGTWVLR+
Sbjct: 121 RNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGVVSLFSARRGTWVLRK 180

Query: 181 FSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMFI 240
           F+ESVAPNIE+LRANGVPDSNIAK+  +RPRTL+R+AEEF DIV+KTKE GFNPSS MF 
Sbjct: 181 FTESVAPNIELLRANGVPDSNIAKIFWMRPRTLARNAEEFSDIVEKTKEAGFNPSSPMFT 240

Query: 241 HGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNKL 300
           +GLCT  GM+KDKWLSKLHIF SFGWSEEQFQSLFLKQP  MNSS EQIK+ALDF MNKL
Sbjct: 241 YGLCTFLGMKKDKWLSKLHIFTSFGWSEEQFQSLFLKQPTIMNSSEEQIKKALDFLMNKL 300

Query: 301 DWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAFLICEDEFLVKFVM 360
           DWT EEISKYP VL LSFEKR++PRSSILQHL+SKGFIKKT+ GRAF++ ED+FLVKFVM
Sbjct: 301 DWTHEEISKYPNVLYLSFEKRVVPRSSILQHLMSKGFIKKTNFGRAFMLSEDKFLVKFVM 360

Query: 361 QYLSEDPHLLKMYQEKMAIL 381
           QYLSEDPHLL+MYQ+KMA+L
Sbjct: 361 QYLSEDPHLLEMYQKKMAVL 380

[Close]

BLAST of HG10004412 vs. ExPASy TrEMBL
Match: A0A6J1GHP2 (uncharacterized protein LOC111454032 OS=Cucurbita moschata OX=3662 GN=LOC111454032 PE=3 SV=1)

HSP 1 Score: 616.3 bits (1588), Expect = 8.5e-173
Identity = 309/380 (81.32%), Postives = 343/380 (90.26%), Query Frame = 0


Query: 1   MGNFMLKPPLRLFAQDLRKFTENGTTIGLKFLSSLTQIPQSTNDRTVDYLVHTLGLSKDS 60
           M NF+ K PLRLFAQDL+KF  N TTI  KFLSSL++I QSTN+RTVDYLVHTLG SKDS
Sbjct: 1   MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS 60

Query: 61  ALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFLS 120
           ALAAAKRIHLK TA+PDSV+ALF A+GFT S TASIF R+P+LLLADPDT LKPKFEFLS
Sbjct: 61  ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFLS 120

Query: 121 QNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLRQ 180
           +NG +G+VLV+VISRDP ILRRSL KQIVPCIDFLR FFGSTD IVSLFS RRGTWVLR+
Sbjct: 121 RNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWVLRK 180

Query: 181 FSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMFI 240
           FSESVAPNIE+LRANGVPDS IAK+  +RPRTL+RDAEEF DIV+KTKE GFNPSS MFI
Sbjct: 181 FSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMFI 240

Query: 241 HGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNKL 300
           +GLCT SGM+KDKWLSKLHIF SFGWS+EQFQSLFLKQP FMNSS E+IKRALDFFMNKL
Sbjct: 241 YGLCTFSGMKKDKWLSKLHIFTSFGWSKEQFQSLFLKQPTFMNSSEEKIKRALDFFMNKL 300

Query: 301 DWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAFLICEDEFLVKFVM 360
           DWT EEIS+YP VL LSFEKR++PRSSILQHL+SKGFIKKTS GRAF++ ED+FLVKFVM
Sbjct: 301 DWTHEEISRYPIVLYLSFEKRVVPRSSILQHLMSKGFIKKTSFGRAFMLSEDKFLVKFVM 360

Query: 361 QYLSEDPHLLKMYQEKMAIL 381
           QYLSEDPHLL+MYQ+KMA+L
Sbjct: 361 QYLSEDPHLLEMYQKKMAVL 380

[Close]

BLAST of HG10004412 vs. ExPASy TrEMBL
Match: A0A6J1KSF9 (uncharacterized protein LOC111496045 OS=Cucurbita maxima OX=3661 GN=LOC111496045 PE=3 SV=1)

HSP 1 Score: 615.9 bits (1587), Expect = 1.1e-172
Identity = 309/380 (81.32%), Postives = 341/380 (89.74%), Query Frame = 0


Query: 1   MGNFMLKPPLRLFAQDLRKFTENGTTIGLKFLSSLTQIPQSTNDRTVDYLVHTLGLSKDS 60
           M NF+ K PLRLFAQ+L+KF  N  TI  KFLSSL++I +STN+RTVDYLVHTLG SKDS
Sbjct: 1   MTNFLFKVPLRLFAQELQKFAGNDPTISRKFLSSLSKISESTNNRTVDYLVHTLGFSKDS 60

Query: 61  ALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFLS 120
           ALAAAKRIHLK TA+PDSV+ALF A+GFT S TASIF RHP+LLLADPDT LKPK EFLS
Sbjct: 61  ALAAAKRIHLKSTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKIEFLS 120

Query: 121 QNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLRQ 180
           +NG +G+VLVDVISRDPSILRRSL KQIVPCIDFLRNFFGSTDGIVSLFS RRGTWVLR+
Sbjct: 121 RNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGIVSLFSARRGTWVLRK 180

Query: 181 FSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMFI 240
           FSESVAPNIE+LRANGVPDSNIAK+  +RPRTL+RDAEEF DIV+KTKE GFNPSS MF 
Sbjct: 181 FSESVAPNIELLRANGVPDSNIAKIFWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMFT 240

Query: 241 HGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNKL 300
           +GLCT  GM+KDKWLSKLHIF SFGWSEEQFQSLFLKQP  MNSS E+IKRAL+FFMNKL
Sbjct: 241 YGLCTYLGMKKDKWLSKLHIFTSFGWSEEQFQSLFLKQPTIMNSSEEKIKRALNFFMNKL 300

Query: 301 DWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAFLICEDEFLVKFVM 360
           DWT EEISKYP +L LS EKR++PRSSILQHLISKGFIKKTS GRAFL+ ED+FLVKFVM
Sbjct: 301 DWTHEEISKYPNLLYLSVEKRVVPRSSILQHLISKGFIKKTSFGRAFLMSEDKFLVKFVM 360

Query: 361 QYLSEDPHLLKMYQEKMAIL 381
           QYLSEDPHLL+MYQ+KMA+L
Sbjct: 361 QYLSEDPHLLEMYQKKMAVL 380

[Close]

BLAST of HG10004412 vs. TAIR 10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 210.7 bits (535), Expect = 2.1e-54
Identity = 116/331 (35.05%), Postives = 188/331 (56.80%), Query Frame = 0


Query: 46  TVDYLVHTLGLSKDSALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLL 105
           T++YL+ + GLS DSA  A++++ L     P++VL L   HGFT +  +S+  + P LLL
Sbjct: 71  TLNYLIDSCGLSPDSATVASRKLLLDSPERPNTVLNLLRDHGFTTAQISSLVKKRPVLLL 130

Query: 106 ADPDTTLKPKFEFLSQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGI 165
           A+ ++ L PK  F    G+S ++L   ++ DP+IL RSL  Q++P  +FL++   S + I
Sbjct: 131 ANAESVLLPKLSFFLSIGVSKSLLARTLASDPTILTRSLVNQLIPSYNFLKSVLDSDEKI 190

Query: 166 VSLFSTRRGTWV-LRQFSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIV 225
           V+  + RR TWV L   ++++ PNI  +   GVP+  I  ++   P  + +   EF  I 
Sbjct: 191 VA--ALRRTTWVFLEDHTKNLVPNINYMAETGVPEKCIKLLLTHFPEAVMQKNHEFQAIA 250

Query: 226 KKTKETGFNPSSLMFIHGLCTLSGM-RKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMN 285
           K+ +E GFNP    F+  +  LSG   K  W     +++ +GWSE+     F K P  M 
Sbjct: 251 KQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMM 310

Query: 286 SSGEQIKRALDFFMNKLDWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKT-S 345
            S  +I R +++F+N+++  P  I++ P VL  S EKRI+PR S+ + L+S G +K+  S
Sbjct: 311 LSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWS 370

Query: 346 VGRAFLICEDEFLVKFVMQYLSEDPHLLKMY 374
           +    +  E  FL K V++Y  E P L+ +Y
Sbjct: 371 LTSLLVPVEKVFLEKLVIKYEEELPELMNLY 399

[Close]

BLAST of HG10004412 vs. TAIR 10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 184.5 bits (467), Expect = 1.6e-46
Identity = 108/368 (29.35%), Postives = 182/368 (49.46%), Query Frame = 0


Query: 17  LRKFTENGTTIG-LKFLSSLTQIPQSTNDR--------TVDYLVHTLGLSKDSALAAAKR 76
           +R+    G  +G ++ L S++Q+     ++        TV YLV + GLS +SA + ++ 
Sbjct: 20  VRRIVNLGFLVGRIRTLCSVSQVKSENLEKQKPCLESFTVSYLVDSCGLSLESAKSNSRF 79

Query: 77  IHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFLSQNGISGN 136
           + L  +  PDSVLALF  HGFT     S+    P +L   P+  + PK  F S  G S +
Sbjct: 80  VKLVSSKKPDSVLALFKDHGFTNDQITSVIKSFPRVLSLSPEDVISPKLMFFSSIGFSTS 139

Query: 137 VLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLRQFSESVAP 196
               +IS  P +L  SL K+++PC D L++     + +V         + L+  +  V+ 
Sbjct: 140 DTAKMISSSPKMLSYSLHKRLIPCYDSLKSILVEEESVVKCLKRGIRCFSLK-ITHCVSL 199

Query: 197 NIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMFIHGLCTLS 256
            + + R  GVPD +I  ++   P T       F +++ +    GF+P    F+H +    
Sbjct: 200 RVSICRELGVPDKSIKWLVQASPFTFFSRERRFNEVLNRVCSYGFDPKKAGFVHAMVAFD 259

Query: 257 GMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNKLDWTPEEI 316
              +     K  +F+ FGWS+E F +  ++ P  +  S E+I   L++ +N +     +I
Sbjct: 260 CTSESAMERKFKLFQCFGWSKEDFVAAIMRFPNCVTVSDEKIMYTLEYLVNNIGLQARDI 319

Query: 317 SKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVG--RAFLICEDEFLVKFVMQYLSE 374
              P VL LS EKRI PR+ ++  L+SKG +KK  +       +   EF+ KFV++Y  E
Sbjct: 320 VARPVVLSLSMEKRIKPRNQVISLLLSKGLVKKEDINYFTILKLKSSEFMDKFVLKYQDE 379

[Close]

BLAST of HG10004412 vs. TAIR 10
Match: AT1G61980.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-36
Identity = 109/368 (29.62%), Postives = 174/368 (47.28%), Query Frame = 0


Query: 46  TVDYLVHTLGLSKDSALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLL 105
           TV YLV +LGL K  A + ++++  +   +PDSVL L  +HGFT S  ++I   +P LL+
Sbjct: 54  TVSYLVDSLGLPKKLAESVSRKVSFEDKDNPDSVLNLLRSHGFTDSQISTIVTDYPQLLV 113

Query: 106 ADPDTTLKPKFEFLSQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFF--GSTD 165
           AD + +L PK +FL   G S + L +++S  P IL +   K I    DF++      S+ 
Sbjct: 114 ADAEKSLAPKLQFLQSRGASSSELTEIVSTVPKILGKRGHKTISVFYDFIKETLLDKSSK 173

Query: 166 GIVSLFSTRRGTWVLRQFSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDA-----E 225
              S     +G        E+   N+ VLR  G+P        LL P  +S D      E
Sbjct: 174 SEKSCQPFPQGN------LENKIRNLSVLRELGMPHK------LLFPLLISCDVPVFGKE 233

Query: 226 EFIDIVKKTKETGFNPSSLMFIHGLCTLSGM----------------------------- 285
           +F + +KK  E GF+PS+  F+  LC +  +                             
Sbjct: 234 KFEESLKKVVEMGFDPSTSKFVEALCVVQRLSDKNIEDKVNAYKRLGFDVEYVWTVFKRW 293

Query: 286 ------RKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNKLDWT 345
                  + K L+ +  F   G+S ++F  L  + P  +  S E +K+  +F + K++W 
Sbjct: 294 PNFLTHSEKKILNTIETFLGLGFSRDEFSVLIKRFPQGIGLSAEMVKKKTEFLVKKMNWP 353

Query: 346 PEEISKYPTVLILSFEKRIMPRSSILQHLISKGFI--KKTSVGRAFLICEDEFLVKFVMQ 370
            + +   P VL  S EKR +PR +++Q LISKG I  +  S+ R F+  +  FL ++V +
Sbjct: 354 LKALVSNPAVLGYSLEKRTVPRGNVVQALISKGLIGSELPSISRVFVCTDQVFLNRYVKR 407

[Close]

BLAST of HG10004412 vs. TAIR 10
Match: AT1G61970.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-33
Identity = 98/382 (25.65%), Postives = 182/382 (47.64%), Query Frame = 0


Query: 37  QIPQSTNDRTVDYLVHTLGLSKDSALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASI 96
           ++ +  N+ TV YLV +LGL+   A + ++++  +   +PDSVL L  +HGFT S  ++I
Sbjct: 45  RVGRKGNNFTVSYLVDSLGLTTKLAESISRKVSFEDKNNPDSVLNLLTSHGFTGSQISTI 104

Query: 97  FYRHPSLLLADPDTTLKPKFEFLSQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLR 156
              +P LL+AD + +L PK +FL   G S + + +++S  P IL +   K I    DF++
Sbjct: 105 IRDYPQLLIADAEKSLGPKLQFLQSRGASSSEITEIVSSVPEILGKKGHKTISVYYDFIK 164

Query: 157 NFF--GSTDGIVSLFSTRRGTWVLRQFSESVAPNIEVLRANGVPDSNIAKMILLRPRTLS 216
           +     S+       S  +G        E+   N+ VLR  G+P   +  +++   + + 
Sbjct: 165 DTLLEKSSKNEKLCHSLPQGN------LENKIRNVSVLRELGMPHKLLFSLLISDSQPVC 224

Query: 217 RDAEEFIDIVKKTKETGFNPSSLMFIHGLCTLSGMRKDKWLSKLHIFKS----------- 276
              E+F + +KK  E GF+P++  F+  L  +  M +     K+H++KS           
Sbjct: 225 -GKEKFEETLKKVVEMGFDPTTSKFVEALQVIYKMNEKTIEEKVHLYKSLGFDVGDVWSS 284

Query: 277 ------------------------FGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNK 336
                                    G+S ++F  +    P  +  S E +K+  +F + K
Sbjct: 285 FKKWPISLRVSEKKMLDSIETFLGLGFSRDEFAKMVKHFPPCIGLSTETVKKKTEFLVKK 344

Query: 337 LDWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKK--TSVGRAFLICEDEFLVK 380
           ++W  + +   P V   S EKRI+PR ++++ L+SKG ++    S+    +  +  FL +
Sbjct: 345 MNWPLKAVVSNPAVFGYSLEKRIVPRGNVIKALMSKGLMRNELPSISCVLMCTKQVFLNR 404

[Close]

BLAST of HG10004412 vs. TAIR 10
Match: AT1G61970.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-33
Identity = 98/382 (25.65%), Postives = 182/382 (47.64%), Query Frame = 0


Query: 37  QIPQSTNDRTVDYLVHTLGLSKDSALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASI 96
           ++ +  N+ TV YLV +LGL+   A + ++++  +   +PDSVL L  +HGFT S  ++I
Sbjct: 45  RVGRKGNNFTVSYLVDSLGLTTKLAESISRKVSFEDKNNPDSVLNLLTSHGFTGSQISTI 104

Query: 97  FYRHPSLLLADPDTTLKPKFEFLSQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLR 156
              +P LL+AD + +L PK +FL   G S + + +++S  P IL +   K I    DF++
Sbjct: 105 IRDYPQLLIADAEKSLGPKLQFLQSRGASSSEITEIVSSVPEILGKKGHKTISVYYDFIK 164

Query: 157 NFF--GSTDGIVSLFSTRRGTWVLRQFSESVAPNIEVLRANGVPDSNIAKMILLRPRTLS 216
           +     S+       S  +G        E+   N+ VLR  G+P   +  +++   + + 
Sbjct: 165 DTLLEKSSKNEKLCHSLPQGN------LENKIRNVSVLRELGMPHKLLFSLLISDSQPVC 224

Query: 217 RDAEEFIDIVKKTKETGFNPSSLMFIHGLCTLSGMRKDKWLSKLHIFKS----------- 276
              E+F + +KK  E GF+P++  F+  L  +  M +     K+H++KS           
Sbjct: 225 -GKEKFEETLKKVVEMGFDPTTSKFVEALQVIYKMNEKTIEEKVHLYKSLGFDVGDVWSS 284

Query: 277 ------------------------FGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNK 336
                                    G+S ++F  +    P  +  S E +K+  +F + K
Sbjct: 285 FKKWPISLRVSEKKMLDSIETFLGLGFSRDEFAKMVKHFPPCIGLSTETVKKKTEFLVKK 344

Query: 337 LDWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKK--TSVGRAFLICEDEFLVK 380
           ++W  + +   P V   S EKRI+PR ++++ L+SKG ++    S+    +  +  FL +
Sbjct: 345 MNWPLKAVVSNPAVFGYSLEKRIVPRGNVIKALMSKGLMRNELPSISCVLMCTKQVFLNR 404

The following BLAST results are available for this feature:

BLAST of HG10004412 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132136.1	1.5e-179	84.21	transcription termination factor MTERF8, chloroplastic-like [Momordica charantia...	[more]
XP_022951071.1	3.8e-175	82.63	uncharacterized protein LOC111454030 [Cucurbita moschata]	[more]
XP_022951072.1	3.2e-174	81.32	uncharacterized protein LOC111454031 [Cucurbita moschata] >XP_022951073.1 unchar...	[more]
XP_023537744.1	7.1e-174	82.89	uncharacterized protein LOC111798676 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022951074.1	1.8e-172	81.32	uncharacterized protein LOC111454032 [Cucurbita moschata] >XP_022951075.1 unchar...	[more]

BLAST of HG10004412 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL6	4.4e-09	23.21	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop...	[more]
Q9FK23	3.5e-06	21.28	Transcription termination factor MTERF8, chloroplastic OS=Arabidopsis thaliana O...	[more]
F4JVI3	3.0e-05	22.03	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]

BLAST of HG10004412 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRE6	7.2e-180	84.21	transcription termination factor MTERF8, chloroplastic-like OS=Momordica charant...	[more]
A0A6J1GGI9	1.8e-175	82.63	uncharacterized protein LOC111454030 OS=Cucurbita moschata OX=3662 GN=LOC1114540...	[more]
A0A6J1GGM9	1.6e-174	81.32	uncharacterized protein LOC111454031 OS=Cucurbita moschata OX=3662 GN=LOC1114540...	[more]
A0A6J1GHP2	8.5e-173	81.32	uncharacterized protein LOC111454032 OS=Cucurbita moschata OX=3662 GN=LOC1114540...	[more]
A0A6J1KSF9	1.1e-172	81.32	uncharacterized protein LOC111496045 OS=Cucurbita maxima OX=3661 GN=LOC111496045...	[more]

BLAST of HG10004412 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07900.1	2.1e-54	35.05	Mitochondrial transcription termination factor family protein	[more]
AT1G21150.1	1.6e-46	29.35	Mitochondrial transcription termination factor family protein	[more]
AT1G61980.1	1.5e-36	29.62	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.1	2.0e-33	25.65	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.2	2.0e-33	25.65	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 272..303 e-value: 59.0 score: 12.5 coord: 237..267 e-value: 1100.0 score: 3.5 coord: 130..162 e-value: 0.07 score: 22.2 coord: 203..233 e-value: 1100.0 score: 3.7 coord: 94..125 e-value: 0.0049 score: 26.1 coord: 304..338 e-value: 9.0 score: 15.2
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 80..238 e-value: 1.4E-17 score: 63.6 coord: 251..354 e-value: 1.0E-16 score: 60.8
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 8..377
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 165..371 e-value: 2.9E-36 score: 126.9
None	No IPR available	PANTHER	PTHR13068:SF187	SUBFAMILY NOT NAMED	coord: 8..377

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004412.1	HG10004412.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0032502	developmental process
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003690	double-stranded DNA binding