HG10005244 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005244
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	cysteine-rich and transmembrane domain-containing protein A-like
Location	Chr07: 769429 .. 770617 (-)
RNA-Seq Expression	HG10005244
Synteny	HG10005244

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCAATATAGCCACCAAGAAATTCCCAGTAAGTAGTTAAGAATGACAAAAACAAATTTCAATTATTACTTACACGCAATAGTTTTAATTTAAATTTGTTGTTGCAGTGGGCTATCCAGCGCCGCCACCGTCGTATCCGGCGGGAGAGCAAGATAAAGTGGGGAAATCAGGGCCTTATGTTGCAGCTCCGCCTCCGGTTGGATATCCGGTGAGAGACGGTCCACAGTACCCTCACCAAACTAATTTCACACCCCAAACTCAATCTAGAGGAGATGGCTTCTGGAAAGGATGGTTAGTTTCCTAAATATATATATATATATATATATATATATATATAAAAGATGGTATCTATTTGCATCTTATCCTATATTTTTAAAAGTGGTTGATACTTAACTTCATATGATACTTTAAGTATCTTGCATTTTGTTAATAGCTCATTTAAATATGTTTTTGGTGGATTGATATTTCAAAGCAACTAATCTAAAATGTGTATATTCTCAATCTAGAGATTCGATTAGAAATTTGGTCGACGTTTGAAATTTTCAACCTACATTTTTAAAACATTGCATTTGGTGAGTTATCGGGGATTAAACTTAATAAAGTCGATCGTGGGCATACATTTATTAAACACAAAATAAACTTTTTGAAATCATTTGGATTGACCAAAAGGATAACAAGATTGGTGAAGTCAAGTTTAATATTATATCATATAACATTGTAAGGTTTGAATGTAAAACCTTCCAAACCAATATACTTTGATACCATCACAAGCAAAAAAAAAAAAAAAAAAATGAGCTAGGATATAGTTCAAAATTTTCAACTTTCCTAAGATTTTAAATCATTAAAAGAAATAAACACATAAGCCATTAGGCACTAGATTTTAGATTAGTTGAATATTTAGATAGTTGTGATAGACGTTGATAAAGGTTTATCAGAGTCCATCAGTGGCAGAAATGATAGAAGTCTAAGTATTTTTTTTTTTTTTGCTATTTTCTATAAATAGTTTGACATTTTTTTATCCATAAAAATTTATCTTATCCTAACCGTAGTTGAATTTGATTTGTGTTTTGTAGCTGTGCTGCGTTGTGTTGCTGCTGGGTATTAGATTGTGTCTTCTGAAGATGCTGACTTAGCTACATTATTGGTTGCTGGTTTGGTTGAGATGAGACTTGTTTTTCAGTTTTAG

mRNA sequence

ATGAGTCAATATAGCCACCAAGAAATTCCCATGGGCTATCCAGCGCCGCCACCGTCGTATCCGGCGGGAGAGCAAGATAAAGTGGGGAAATCAGGGCCTTATGTTGCAGCTCCGCCTCCGGTTGGATATCCGATTGTGTCTTCTGAAGATGCTGACTTAGCTACATTATTGGTTGCTGGTTTGGTTGAGATGAGACTTGTTTTTCAGTTTTAG

Coding sequence (CDS)

ATGAGTCAATATAGCCACCAAGAAATTCCCATGGGCTATCCAGCGCCGCCACCGTCGTATCCGGCGGGAGAGCAAGATAAAGTGGGGAAATCAGGGCCTTATGTTGCAGCTCCGCCTCCGGTTGGATATCCGATTGTGTCTTCTGAAGATGCTGACTTAGCTACATTATTGGTTGCTGGTTTGGTTGAGATGAGACTTGTTTTTCAGTTTTAG

Protein sequence

MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPIVSSEDADLATLLVAGLVEMRLVFQF

Homology

[Close]

BLAST of HG10005244 vs. NCBI nr
Match: XP_011659032.1 (cysteine-rich and transmembrane domain-containing protein WIH2 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 4.9e-12
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPI 46
          MSQY +QEI MGYPAPPPSY AGEQ K GKSGPYVAAPPPVGYP+
Sbjct: 1  MSQYRNQEISMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPV 45

[Close]

BLAST of HG10005244 vs. NCBI nr
Match: XP_008447127.1 (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo] >KAA0056521.1 cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa] >TYK12091.1 cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 4.9e-12
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPI 46
          MSQY +QEI MGYPAPPPSY AGEQ K GKSGPYVAAPPPVGYP+
Sbjct: 1  MSQYRNQEIDMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPV 45

[Close]

BLAST of HG10005244 vs. NCBI nr
Match: KAE8646099.1 (hypothetical protein Csa_015748 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 4.9e-12
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPI 46
          MSQY +QEI MGYPAPPPSY AGEQ K GKSGPYVAAPPPVGYP+
Sbjct: 1  MSQYRNQEISMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPV 45

[Close]

BLAST of HG10005244 vs. NCBI nr
Match: KAG7023002.1 (hypothetical protein SDJN02_16738, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.0 bits (188), Expect = 7.1e-11
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPI 46
          MSQY HQ+IPM YPAPPPSYPA E+ K   SGPYVAAPPPVGYP+
Sbjct: 1  MSQYRHQQIPMAYPAPPPSYPAVEEVKESNSGPYVAAPPPVGYPV 45

[Close]

BLAST of HG10005244 vs. NCBI nr
Match: KAG6589304.1 (hypothetical protein SDJN03_17869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 7.1e-11
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPI 46
          MSQY HQ+IPM YPAPPPSYPA E+ K   SGPYVAAPPPVGYP+
Sbjct: 1  MSQYRHQQIPMAYPAPPPSYPAVEEVKESNSGPYVAAPPPVGYPV 45

[Close]

BLAST of HG10005244 vs. ExPASy TrEMBL
Match: A0A5A7USJ3 (Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00200 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPI 46
          MSQY +QEI MGYPAPPPSY AGEQ K GKSGPYVAAPPPVGYP+
Sbjct: 1  MSQYRNQEIDMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPV 45

[Close]

BLAST of HG10005244 vs. ExPASy TrEMBL
Match: A0A0A0K5N8 (CYSTM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G237300 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPI 46
          MSQY +QEI MGYPAPPPSY AGEQ K GKSGPYVAAPPPVGYP+
Sbjct: 1  MSQYRNQEISMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPV 45

[Close]

BLAST of HG10005244 vs. ExPASy TrEMBL
Match: A0A1S3BHK1 (cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo OX=3656 GN=LOC103489653 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPI 46
          MSQY +QEI MGYPAPPPSY AGEQ K GKSGPYVAAPPPVGYP+
Sbjct: 1  MSQYRNQEIDMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPV 45

[Close]

BLAST of HG10005244 vs. ExPASy TrEMBL
Match: A0A6J1D469 (cysteine-rich and transmembrane domain-containing protein B-like OS=Momordica charantia OX=3673 GN=LOC111016829 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-08
Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 1  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPI 46
          MSQY  QEIPM YPAPPPSYPA EQ K    GPYV APPPVGYP+
Sbjct: 1  MSQYRPQEIPMAYPAPPPSYPAAEQFK----GPYVTAPPPVGYPV 41

[Close]

BLAST of HG10005244 vs. ExPASy TrEMBL
Match: A0A6J1JEV3 (cysteine-rich and transmembrane domain-containing protein B-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486275 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.7e-06
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 11 MGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPI 46
          M YPAPPPSYPA E+ K   SGPYVAAPPPVGYP+
Sbjct: 1  MAYPAPPPSYPAVEEVKESNSGPYVAAPPPVGYPV 35

The following BLAST results are available for this feature:

BLAST of HG10005244 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659032.1	4.9e-12	84.44	cysteine-rich and transmembrane domain-containing protein WIH2 [Cucumis sativus]	[more]
XP_008447127.1	4.9e-12	84.44	PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cuc...	[more]
KAE8646099.1	4.9e-12	84.44	hypothetical protein Csa_015748 [Cucumis sativus]	[more]
KAG7023002.1	7.1e-11	77.78	hypothetical protein SDJN02_16738, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6589304.1	7.1e-11	77.78	hypothetical protein SDJN03_17869, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10005244 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10005244 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7USJ3	2.4e-12	84.44	Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo...	[more]
A0A0A0K5N8	2.4e-12	84.44	CYSTM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G237300 PE=3 ...	[more]
A0A1S3BHK1	2.4e-12	84.44	cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo...	[more]
A0A6J1D469	1.2e-08	75.56	cysteine-rich and transmembrane domain-containing protein B-like OS=Momordica ch...	[more]
A0A6J1JEV3	5.7e-06	77.14	cysteine-rich and transmembrane domain-containing protein B-like isoform X2 OS=C...	[more]

BLAST of HG10005244 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005244.1	HG10005244.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane