HG10015420 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015420
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr02: 26493114 .. 26496542 (+)
RNA-Seq Expression	HG10015420
Synteny	HG10015420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGAACACAACCACAATTTCGTGCTCATTCCTCTCGCTCCGGACTCCTTCCGTTCATGCATCATTAGACACAAAATCGACTATTTGAAAATCGTGGTTGCATCCAGTCCTAGCGTGTGTTTCAAAGTGAAAATAGTACTTTCACATGCAACTGATAGCAAAATGTCATTTTTCAAGTAGATTTAGGGTGTGTTTGGACTCTTTCCCTTGTCAAAATCAGATGTTTGGCACTCACATAAAATTGATTTTTCAAAAATTTGAAATCACTAAAAATTGATTTTGTAGGTATCAGTTTATTGGTGATTTGGTTGGGGTGATTATCAGGGAATCAGATAAAAAATTTAGAACACCAAATTTGTCACTCATATTTAAGGATAAGATTTAGCCCTAATCCATTTCTTCCTTCTCTTTCAGCCGATACATCCTCTCTCGTGTCCGTCGCTTGGTTCCATTAACTATCCGTGGTAGTGATGATTTCAGTAAGTTTTTGTTTTTTGTAATTTTCTTTTCACATGGATGAGCTTCAATTTTTAGCAGTTTTTGTTGTTTTTTCACTGTATCGTTCCTTAGTTTTTTGTTACTATTTACTTTGTTCCTTTCGTGGCTTTTCCTCTCTATATGAACAATTTTTTTTGGGATATTTCAATCATTGTCTTCGATCCTTGTTGATTTTTTTTTTTAGTCTCTCTACTTTTCTGATGGAGCGGGAGAAAATTGCAAGATTTCTTATATCTCGTTAATATTTTTGTTATACAGCTCGTATTTCAATAGATAATATCTAGTTTAAGTATTTTGTAATGATACAAAAATTTCTAGATTGGATGAGATATATGTTTTGAATTTTCTTTTGTTTTTATTATGTGTATTTTTCTTACCTCACATATCAATTATGCATACAATAATTTAACATTAAAATAAATAAAAATAATAAATTAATAAAATTAGATATTTTTATAATTATTTTTTAAAACAAAAATTCAAATATAAAATACCCTTTTTAGTAATTTGGTAATTTTAAAATTACTTTTAGAACCAAACATGATAAATTCAAAATCACTTTTATATATTTGAAAATCACTTTAAAAGTTCGGAACCAAACATAAGTTTGATTGTTTAAAAATCAATTTTATAAAATCAATTTGTTCTAAAATCTCTATCACTAAAATCACCACTCCAACTATCACTCCCAAACACACCCTTAAACTTTGAGTCATTTTTTATTTGGACTCGTCCAAAGGGGCTATCTTACAATTTTTCCTAATTTTTAGGGGGTTTAATGAGAGTAAAAGTGAAAAGTTTTGTTATTTATAAAATTGTGTTACATCTAACAATCACCCATTACATTTGAGAGTAAAATATGACGACAAGATTAGTATTTTATAAGAAGAATGAAATGTATTTAATACTCTTGTTAAATTACAAATTTAGTTATTAAAGTACTCTGTCAATTTGATATTTGAACTTTTAATTTTATGTATAATAAGTCTTTAAACTTAACAAAATGTCCAATAGAAGTCTTAAATTTTCAATCTTGTGACTAATAAATTTTTAAATTTTGTGTTAAAAACGTCTTCAACCTATTCTATATGTTAAAATTTATAAATTTATTAGATGCAAAATTGAGACTTTAGACTTTCGGTAAATATAATTTATATTTATATTTTATAGATTCATTAATATAATATATGACATAGATTTATTTTTAAAAATTAAAAATAAAAAAATTAAATTTTAAAAAATTTATGGACTAAATTTAATAATTTAAATAGATGTTTTCAAATATAGCAAAATGAGTCAACTAATTTACTGTAATCTATCACCCTTTATCACTTTTGCTACATTTAAAAATATTTTAAGTAGTTTTAATAATCCTAATTTAAACTATTTTTTAGTACAATTTAAACACTTTTTATTAAAAAACATAAAAAAAAAAAAGAATTGTTTAATATTTTGGGGGGATTTTACTTATTTATTTATTTATGTCAGTATTTGGTCGATCAGGTAATTCTGGGAAAAGAATGAAAATTGGGAAGTCGCATTGAAAGGTCGCGTAATCCAAAGAGGGAACTCTCTTTTTCTTCACTCATTGGGTTGGAAATTGATATGGAATTTTGTCATTTCCAAAATTCCCATACTAATTTTCTTTTTCCTTTTTTTTTTCCTCCACACCACATTTTCGAAGAATAAAATAAACAAAAATCTTAAAATTCAATCCTTGAGGTCTCATTTCATAATAATTTTATTTGTAATTTTTTTAATATATGTTTCTTTATTATAGTTTTCATCTATTTCTATGTGACATTTTGAATTTTTTTTTTTGTCAAATTCTAAAAATAGTAACAAAATTTTAAAAATTATTTTTCATAGTTTTCTCTAATTTGGCATTATAATTATTATTATTTTTAACAAAAAAAAAATAAAAAGACATTAAGTAGTAAATAGATAACAAAACATATAACTCATAGATGAAAGTTATGTACTTTATAAGCTTAATTTTAAAAATTATAGTTATTAAGGAAATTTTTAAAAATAGAAAAATAAGGAAAACTATTTACACAAAATAGAAATTTTTTTAGATAGTTGTGATAGATACTGATAAAAATCTATCAGGGTCTATCAGTGATAGAAATGATAAAAGTCTATCACTGATAGATGTTAATAAAAATCTATCAATGTCTATTAGTGTTTTTTTTTTTTTTTTTTTTGTTATTTTGTGTAAATAATTTTACATTTTTTCTATCTATAAAAATTTCCTTAGTTATTATGTGGGATTTTAAATTAAAACTTCAAAATTTAGCTTTCTAACGTAGTAAAGTTATTATATCATTATTTTGTATTATATATATGTAGGCAAACTGATTTATTACTACGTGTAATACATGTGTTATATATTTTAAAAATATAACATGATTTTTGATTTTATTATATATGGATAATTATGTGGTTTATTTAACAATTGAAAATTTTGGGAGGAAAAAGATATTATTTCCAAGAATTAATGTGTAATAATACAAGTCGGAAACAAACCACATTAATCGAGAAGAGCCCCAAAAAAATATGGAAATTAAGAAGATGGAGCATTTTTGTGTAGAAGGGGCTATGTTATTTAATTGAAATTGAATTAGTTCGGAATTCCAAGATGTTATATTTCCCAATAATTGAGCCCCCTCTATATAAATATAACGAAATCCTCCTTCAATCTTGTTAATTATATTATTGTGAAAATTGGTAGGCCAAAAAATGGAAAATGCAAGTGCAATTGTTGGTGCTGTGGTGGGAATTGCTTCCATTGCTGTGTCCTTGGCTTCTTTAATGACTGGAAATCCAAAGATGATGAAAGCTCCTGGAAAAGATGGCTTCATTCCCAGAGCTGGTTTTGAGCGCCATCCTGCTGCTTATTTTAGAAACCTCCGCAAGCCTTCCTAA

mRNA sequence

ATGGCCGAACACAACCACAATTTCGTGCTCATTCCTCTCGCTCCGGACTCCTTCCGTTCATGCATCATTAGACACAAAATCGACTATTTGAAAATCGTGGTTGCATCCAGTCCTAGCGTGTGTTTCAAAGTGAAAATAGTACTTTCACATGCAACTGATAGCAAAATGTCATTTTTCAACCGATACATCCTCTCTCGTGTCCGTCGCTTGGTTCCATTAACTATCCGTGGTAGTGATGATTTCAGCCAAAAAATGGAAAATGCAAGTGCAATTGTTGGTGCTGTGGTGGGAATTGCTTCCATTGCTGTGTCCTTGGCTTCTTTAATGACTGGAAATCCAAAGATGATGAAAGCTCCTGGAAAAGATGGCTTCATTCCCAGAGCTGGTTTTGAGCGCCATCCTGCTGCTTATTTTAGAAACCTCCGCAAGCCTTCCTAA

Coding sequence (CDS)

ATGGCCGAACACAACCACAATTTCGTGCTCATTCCTCTCGCTCCGGACTCCTTCCGTTCATGCATCATTAGACACAAAATCGACTATTTGAAAATCGTGGTTGCATCCAGTCCTAGCGTGTGTTTCAAAGTGAAAATAGTACTTTCACATGCAACTGATAGCAAAATGTCATTTTTCAACCGATACATCCTCTCTCGTGTCCGTCGCTTGGTTCCATTAACTATCCGTGGTAGTGATGATTTCAGCCAAAAAATGGAAAATGCAAGTGCAATTGTTGGTGCTGTGGTGGGAATTGCTTCCATTGCTGTGTCCTTGGCTTCTTTAATGACTGGAAATCCAAAGATGATGAAAGCTCCTGGAAAAGATGGCTTCATTCCCAGAGCTGGTTTTGAGCGCCATCCTGCTGCTTATTTTAGAAACCTCCGCAAGCCTTCCTAA

Protein sequence

MAEHNHNFVLIPLAPDSFRSCIIRHKIDYLKIVVASSPSVCFKVKIVLSHATDSKMSFFNRYILSRVRRLVPLTIRGSDDFSQKMENASAIVGAVVGIASIAVSLASLMTGNPKMMKAPGKDGFIPRAGFERHPAAYFRNLRKPS

Homology

[Close]

BLAST of HG10015420 vs. NCBI nr
Match: KAA0034482.1 (hypothetical protein E6C27_scaffold65G004940 [Cucumis melo var. makuwa] >TYK09036.1 hypothetical protein E5676_scaffold475G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-15
Identity = 43/56 (76.79%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 87  NASAIVGAVVGIASIAVSLASLMTGNPKMMKAPGKDGFIPRAGFERHPAAYFRNLR 143
           N +AI+G VVG+AS+ VS+ASLM+GNPKMMKAPGKDG+IPRA FE++PAAYFRNLR
Sbjct: 5   NLTAIIGGVVGVASLVVSVASLMSGNPKMMKAPGKDGYIPRAAFEKNPAAYFRNLR 60

[Close]

BLAST of HG10015420 vs. NCBI nr
Match: KAE8648768.1 (hypothetical protein Csa_009432 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-11
Identity = 36/53 (67.92%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 89  SAIVGAVVGIASIAVSLASLMTGNPKMMKAPGKDGFIPRAGFERHPAAYFRNL 142
           +AI+G V+G+AS+ V + SLM+GNPKMMKAPG+DG+IPRA FE++PAAYF NL
Sbjct: 7   TAIIGGVMGVASLVVMVTSLMSGNPKMMKAPGQDGYIPRAAFEKNPAAYFANL 59

[Close]

BLAST of HG10015420 vs. NCBI nr
Match: KAA8532866.1 (hypothetical protein F0562_033017 [Nyssa sinensis])

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-07
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 91  IVGAVVGIASIAVSLASLMTG-----NPKMMKAPGKDGFIPRAGFERHPAAYFRNLR 143
           ++GAV GIA  A SL+SL++G     N KMMKAPG+DG+IPR+ FE++P  YF NLR
Sbjct: 78  VIGAVAGIAVAAWSLSSLLSGSEAESNEKMMKAPGRDGYIPRSDFEKNPKDYFSNLR 134

[Close]

BLAST of HG10015420 vs. NCBI nr
Match: VVB09302.1 (unnamed protein product [Arabis nemorensis])

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-05
Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 75  IRGSDDFSQKMENASAIVGAVVGIASIAVSLASLM--TGNPKMMKAPGKDGFIPRAGFER 134
           +   D+ S   +NA+ I+G  + + ++ V LAS +  +   KMMKAPGKDG+IPR  F+ 
Sbjct: 1   MESKDEKSMFYDNATIIIGIAIAVGAV-VGLASWLCSSSKEKMMKAPGKDGYIPRNAFKN 60

Query: 135 HPAAYFRNLRK 144
           +P  YF++LRK
Sbjct: 61  NPKGYFKDLRK 70

[Close]

BLAST of HG10015420 vs. NCBI nr
Match: KDP41341.1 (hypothetical protein JCGZ_15748 [Jatropha curcas])

HSP 1 Score: 54.7 bits (130), Expect = 7.8e-04
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 91  IVGAVVGIASIAVSLASLMT-----GNPKMMKAPGKDGFIPRAGFERHPAAYFRNLR 143
           ++GAVVG+A+IA  +A +++      + K MKAPGKDG I R  FE+ PAAYFRN R
Sbjct: 13  LLGAVVGVAAIAYGIAEIVSKPSSGSSRKTMKAPGKDGRIFRDEFEKDPAAYFRNNR 69

[Close]

BLAST of HG10015420 vs. ExPASy TrEMBL
Match: A0A5D3CFA6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00220 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 9.6e-16
Identity = 43/56 (76.79%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 87  NASAIVGAVVGIASIAVSLASLMTGNPKMMKAPGKDGFIPRAGFERHPAAYFRNLR 143
           N +AI+G VVG+AS+ VS+ASLM+GNPKMMKAPGKDG+IPRA FE++PAAYFRNLR
Sbjct: 5   NLTAIIGGVVGVASLVVSVASLMSGNPKMMKAPGKDGYIPRAAFEKNPAAYFRNLR 60

[Close]

BLAST of HG10015420 vs. ExPASy TrEMBL
Match: A0A5J5ASQ4 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_033017 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.1e-07
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 91  IVGAVVGIASIAVSLASLMTG-----NPKMMKAPGKDGFIPRAGFERHPAAYFRNLR 143
           ++GAV GIA  A SL+SL++G     N KMMKAPG+DG+IPR+ FE++P  YF NLR
Sbjct: 78  VIGAVAGIAVAAWSLSSLLSGSEAESNEKMMKAPGRDGYIPRSDFEKNPKDYFSNLR 134

[Close]

BLAST of HG10015420 vs. ExPASy TrEMBL
Match: A0A565C6T0 (Uncharacterized protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS19746 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.0e-06
Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 75  IRGSDDFSQKMENASAIVGAVVGIASIAVSLASLM--TGNPKMMKAPGKDGFIPRAGFER 134
           +   D+ S   +NA+ I+G  + + ++ V LAS +  +   KMMKAPGKDG+IPR  F+ 
Sbjct: 1   MESKDEKSMFYDNATIIIGIAIAVGAV-VGLASWLCSSSKEKMMKAPGKDGYIPRNAFKN 60

Query: 135 HPAAYFRNLRK 144
           +P  YF++LRK
Sbjct: 61  NPKGYFKDLRK 70

[Close]

BLAST of HG10015420 vs. ExPASy TrEMBL
Match: A0A067KYR7 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15748 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.8e-04
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 91  IVGAVVGIASIAVSLASLMT-----GNPKMMKAPGKDGFIPRAGFERHPAAYFRNLR 143
           ++GAVVG+A+IA  +A +++      + K MKAPGKDG I R  FE+ PAAYFRN R
Sbjct: 13  LLGAVVGVAAIAYGIAEIVSKPSSGSSRKTMKAPGKDGRIFRDEFEKDPAAYFRNNR 69

[Close]

BLAST of HG10015420 vs. ExPASy TrEMBL
Match: A0A7J0ER40 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_06g0007000 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.9e-04
Identity = 33/77 (42.86%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 72  PLTIRGSDDFSQKMENASAIVGAVVGIASIAVSLASLMTGN-----PKMMKAPGKDGFIP 131
           P   R  +D + K    +A+  AV G   +   L+ ++TG+      K MKAPGKD FI 
Sbjct: 9   PRAAREEEDLAHKETAKTAL--AVAGAMLLGWGLSKIVTGSGEKSGRKKMKAPGKDSFIY 68

Query: 132 RAGFERHPAAYFRNLRK 144
           R  FER PA YFR+LRK
Sbjct: 69  RDDFERDPAGYFRSLRK 83

The following BLAST results are available for this feature:

BLAST of HG10015420 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034482.1	2.0e-15	76.79	hypothetical protein E6C27_scaffold65G004940 [Cucumis melo var. makuwa] >TYK0903...	[more]
KAE8648768.1	1.0e-11	67.92	hypothetical protein Csa_009432 [Cucumis sativus]	[more]
KAA8532866.1	4.4e-07	57.89	hypothetical protein F0562_033017 [Nyssa sinensis]	[more]
VVB09302.1	1.9e-05	42.25	unnamed protein product [Arabis nemorensis]	[more]
KDP41341.1	7.8e-04	52.63	hypothetical protein JCGZ_15748 [Jatropha curcas]	[more]

BLAST of HG10015420 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10015420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFA6	9.6e-16	76.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5J5ASQ4	2.1e-07	57.89	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_033017 PE=4 SV=1	[more]
A0A565C6T0	9.0e-06	42.25	Uncharacterized protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS19746 PE=4 SV...	[more]
A0A067KYR7	3.8e-04	52.63	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15748 PE=4 SV=1	[more]
A0A7J0ER40	4.9e-04	42.86	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_06g0007000 PE=4 SV=1	[more]

BLAST of HG10015420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039926	Protein egg apparatus-1	PANTHER	PTHR33333	ERYTHROCYTE MEMBRANE PROTEIN 1-LIKE	coord: 86..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015420.1	HG10015420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane