HG10011271 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011271
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	THO complex subunit 4D
Location	Chr01: 4269384 .. 4271338 (-)
RNA-Seq Expression	HG10011271
Synteny	HG10011271

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTCCTTTGGATATGTCACTAGAGGACGTGATAAAGAAGAATAACCGTGAGAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGGTCAGTTCGTAGAGGTCCTCTTGGCATAAATGCGCGGGCATCTGCTTACTCAATTCGCAAGGCAAGCTTCAAACTGTGATGTTTAATGCATATGCTTGAGAACCTGATATTCCTTGAAAATACATGCTCACGGGGATTTCAAATAACACTATAGTAACTCTTAACAGAAGTGGATGAGTAAAATTGTTGTTCTGTGGAGAATCTCATTGTGGGTCACCCTCTGATCTGAATCGTCTTCTGGTGTATTTGTACCATTATCTTTGCAAATATTGAATACGTGTGGGTTATCTGGGTTATTTTCAAAGGACTTTCAAGGGTGGAGAATTATATTCTTGTCGATTTATAAGCTGATATGTGTTTTCCCCGTCTGGATTCTTATCTGCATGCTTTCATCAGCCCCCGCGCAGAATGAAGAATGTTCAATGGAAGCATGATTTATTCGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAGGGTACAACTCAAGCCATATATATTTGACTAAAGATGCTTTCTCTTCACTTTTTTTTTCGATTAATATTCACTTGGAACCTGACGGTGAACTCAGGAGTTGTTCTCTGAGATTGGAGACCTGAAAAGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGTGTAAGTTCCTCCCTGTATTTGTAAATTTATGCAGTAATGTGTTGCTATTTGGCTTTCTCTGGAATCAAGGATTAATATTGTTTTGGTAGCCACAACTGTGTGACCATTGAATCAACATTTGCTTTTGGTGGATTCAACTTTATCTGTATGCAGTACTGAAATCTCAATCTTTACTTTAGAAGTTGGATAGTGCTGGAAAAAACTATTATGAGGAACTTTTGACTAGAGTACATAACAACTTCAAGTTAATGAATAAATTATATATATTGCACATTTTTATATAATTTCTCCTTAATGGTTTAATATTTTATTTCATGAAGAAAACTACACTCCAAAGTAATAAATTGATTATTAGTTATTTGTGGTTCAAAAGTTTCCGTTTATGAATTAAAGTATGGATGGGATAAAAGTGATCTTATTTCGAGTAAAAAAATATGTTGTATTTTTAATTAACCAACTTGTGTTGGCTAGGCTTAACACGCTTCATTTTTAAGAAGTTTGAACGTAGCTAATTTAATATATTCAGTTCATTTCAATCTAGATATCCCAAAAACTTGTTACTCCAACCCAACCCATTAAGCTTTTCAGGGCTGATTTTCTTTTCCGCTTCTTTAAGGACTAAACCTATCTGCAAAGCAGTACAATATATGAGATTGTGGTTTCATATGTGGTGGCATAGTCTCATTCTTTAGTGTGTATTGATCCTTGACCATGTATTCTCTATTTCTTGCTCCTCTACATTGTCTTTGCTTATCAATTATCGTTGTTATTCATTTTTACTTTCTCTTAAGTTAGCATGAGATTTAGTAGAAAATATGATAATTATCGTATTTATGTTTTAGAAGCGTATATAAAAGTTAGCTCCCTAATCAAGCTTTAGCTGGCTGATAAACTTTCCATTGTCTATTGAAGGGCTCAGCAGAGGTGGTATATACTCGTAGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAGTGAATGGAAGAAGCAGGAGGACAGTTGTTCTAACGTATGTAGTATTCTAG

mRNA sequence

ATGGCTACTCCTTTGGATATGTCACTAGAGGACGTGATAAAGAAGAATAACCGTGAGAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGAATGAAGAATGTTCAATGGAAGCATGATTTATTCGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAGGGAGTTGTTCTCTGAGATTGGAGACCTGAAAAGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGTGGCTCAGCAGAGGTGGTATATACTCGTAGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAGTGAATGGAAGAAGCAGGAGGACAGTTGTTCTAACGTATGTAGTATTCTAG

Coding sequence (CDS)

ATGGCTACTCCTTTGGATATGTCACTAGAGGACGTGATAAAGAAGAATAACCGTGAGAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGAATGAAGAATGTTCAATGGAAGCATGATTTATTCGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAGGGAGTTGTTCTCTGAGATTGGAGACCTGAAAAGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGTGGCTCAGCAGAGGTGGTATATACTCGTAGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAGTGAATGGAAGAAGCAGGAGGACAGTTGTTCTAACGTATGTAGTATTCTAG

Protein sequence

MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGMKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGVNGRSRRTVVLTYVVF

Homology

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BLAST of HG10011271 vs. NCBI nr
Match: XP_038896761.1 (THO complex subunit 4D-like [Benincasa hispida])

HSP 1 Score: 328.6 bits (841), Expect = 3.5e-86
Identity = 171/200 (85.50%), Postives = 176/200 (88.00%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIG-------------- 60
           MATPLDMSLEDVIKK+NREKLRARGRARRGRGAGGSFNGGRGVV+G              
Sbjct: 1   MATPLDMSLEDVIKKSNREKLRARGRARRGRGAGGSFNGGRGVVVGSVRRGPLGINARAS 60

Query: 61  ----------MKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
                     MKNVQW+HDLFEDSLRASGISGIEIGTKLYVSNLDYGV+KEDIRELFSEI
Sbjct: 61  AYSIRKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVSKEDIRELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 177
           GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDG+PMKIEMLGDNAEMPV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGRPMKIEMLGDNAEMPV 180

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BLAST of HG10011271 vs. NCBI nr
Match: XP_008457020.1 (PREDICTED: THO complex subunit 4D [Cucumis melo])

HSP 1 Score: 328.2 bits (840), Expect = 4.5e-86
Identity = 171/200 (85.50%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIG-------------- 60
           M TPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIG              
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  ----------MKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
                     MKNVQW+HDLFEDSLRASGISGI+IGTKLYVSNLDYGVTKEDIRELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 177
           GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

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BLAST of HG10011271 vs. NCBI nr
Match: XP_022935328.1 (THO complex subunit 4D-like [Cucurbita moschata] >XP_022935329.1 THO complex subunit 4D-like [Cucurbita moschata] >XP_022935330.1 THO complex subunit 4D-like [Cucurbita moschata])

HSP 1 Score: 326.6 bits (836), Expect = 1.3e-85
Identity = 171/200 (85.50%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIG-------------- 60
           MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGS+NGGR VVIG              
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  ----------MKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
                     MKNVQW+HDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 177
           GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA+ PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPV 180

[Close]

BLAST of HG10011271 vs. NCBI nr
Match: XP_023527122.1 (THO complex subunit 4D [Cucurbita pepo subsp. pepo])

HSP 1 Score: 326.6 bits (836), Expect = 1.3e-85
Identity = 171/200 (85.50%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIG-------------- 60
           MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGS+NGGR VVIG              
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  ----------MKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
                     MKNVQW+HDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 177
           GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA+ PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPV 180

[Close]

BLAST of HG10011271 vs. NCBI nr
Match: XP_022982649.1 (THO complex subunit 4D-like [Cucurbita maxima] >XP_022982650.1 THO complex subunit 4D-like [Cucurbita maxima] >XP_022982651.1 THO complex subunit 4D-like [Cucurbita maxima])

HSP 1 Score: 326.6 bits (836), Expect = 1.3e-85
Identity = 171/200 (85.50%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIG-------------- 60
           MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGS+NGGR VVIG              
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  ----------MKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
                     MKNVQW+HDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 177
           GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA+ PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPV 180

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BLAST of HG10011271 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.4e-50
Identity = 108/202 (53.47%), Postives = 145/202 (71.78%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRAR-RGRGAGGSFNGGRGV---------------- 60
           M+  L+M+L++++K+    +   RG +R RGRG GG   GGRG                 
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGG---GGRGAGPARRGPLAVNARPSS 60

Query: 61  ------VIGMKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIG 120
                 V  ++++ W+  LFED LRA+G SG+E+GT+L+V+NLD GVT EDIRELFSEIG
Sbjct: 61  FTINKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFSEIG 120

Query: 121 DLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AEMP 176
           +++R+AIHYDKNGRPSG+AEVVY RRSDAF ALK+YNNVLLDG+PM++E+LG N  +E P
Sbjct: 121 EVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSEAP 180

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BLAST of HG10011271 vs. ExPASy Swiss-Prot
Match: Q94EH8 (THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.3e-48
Identity = 104/210 (49.52%), Postives = 147/210 (70.00%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRA-----RGRARR-GRGAGGS---FNGGRG--------- 60
           M+  L+M+L++++KK+  E+  A     +G +R+ GRG GG      GGRG         
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGGGPVRRGPL 60

Query: 61  --------------VVIGMKNVQW--KHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTK 120
                         +    +++ W  ++DL+E++LRA G+SG+E+GT +Y++NLD GVT 
Sbjct: 61  AVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGVTN 120

Query: 121 EDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE 176
           EDIREL++EIG+LKR+AIHYDKNGRPSGSAEVVY RRSDA  A+++YNNVLLDG+PMK+E
Sbjct: 121 EDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMKLE 180

[Close]

BLAST of HG10011271 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.3e-35
Identity = 82/170 (48.24%), Postives = 108/170 (63.53%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGMKNVQ--------- 60
           M+T LDMSL+D+I KN   K R      RG G+G      R      K+ +         
Sbjct: 1   MSTGLDMSLDDMIAKN--RKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKA 60

Query: 61  ----WKHDLF----EDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFA 120
               W HD+F    ED       +GIE GTKLY+SNLDYGV  EDI+ELF+E+G+LKR+ 
Sbjct: 61  PESTWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE 154
           +H+D++GR  G+AEVVY+RR DA AA+K+YN+V LDGKPMKIE++G N +
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQ 168

[Close]

BLAST of HG10011271 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.5e-35
Identity = 88/191 (46.07%), Postives = 114/191 (59.69%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIG-------------- 60
           M+  LDMSL+D+I K+NR+   +RGR   G G      GG G   G              
Sbjct: 1   MSGGLDMSLDDII-KSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTA 60

Query: 61  ----------MKNVQWKHDLF--EDSLRAS----------GISGIEIGTKLYVSNLDYGV 120
                       +  W++D+F  + S+ A+          G S IE GTKLY+SNLDYGV
Sbjct: 61  PYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGV 120

Query: 121 TKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 156
           + EDI+ELFSE+GDLKR+ IHYD++GR  G+AEVV++RR DA AA+KRYNNV LDGK MK
Sbjct: 121 SNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMK 180

[Close]

BLAST of HG10011271 vs. ExPASy Swiss-Prot
Match: B5FXN8 (THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-28
Identity = 75/181 (41.44%), Postives = 108/181 (59.67%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNG---GRGVVIG-------MKN- 60
           MA  +DMSL+D+IK N  ++  +RG  R GRG GG+  G   GRG V G       ++N 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGASRG-GRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNR 60

Query: 61  ----------------------VQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKE 120
                                  +W+HDLF+    A   +G+E G KL VSNLD+GV+  
Sbjct: 61  PVMARGGGRNRPAPYSRPKQLPEKWQHDLFDSGFGAG--AGVETGGKLLVSNLDFGVSDA 120

Query: 121 DIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEM 149
           DI+ELF+E G LK+ A+HYD++GR  G+A+V + R++DA  A+K+YN V LDG+PM I++
Sbjct: 121 DIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 178

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BLAST of HG10011271 vs. ExPASy TrEMBL
Match: A0A1S3C452 (THO complex subunit 4D OS=Cucumis melo OX=3656 GN=LOC103496802 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.2e-86
Identity = 171/200 (85.50%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIG-------------- 60
           M TPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIG              
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  ----------MKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
                     MKNVQW+HDLFEDSLRASGISGI+IGTKLYVSNLDYGVTKEDIRELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 177
           GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

[Close]

BLAST of HG10011271 vs. ExPASy TrEMBL
Match: A0A6J1J564 (THO complex subunit 4D-like OS=Cucurbita maxima OX=3661 GN=LOC111481464 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.4e-86
Identity = 171/200 (85.50%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIG-------------- 60
           MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGS+NGGR VVIG              
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  ----------MKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
                     MKNVQW+HDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 177
           GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA+ PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPV 180

[Close]

BLAST of HG10011271 vs. ExPASy TrEMBL
Match: A0A6J1FAB9 (THO complex subunit 4D-like OS=Cucurbita moschata OX=3662 GN=LOC111442248 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.4e-86
Identity = 171/200 (85.50%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIG-------------- 60
           MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGS+NGGR VVIG              
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  ----------MKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
                     MKNVQW+HDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 177
           GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA+ PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPV 180

[Close]

BLAST of HG10011271 vs. ExPASy TrEMBL
Match: A0A0A0L717 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G302100 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.1e-85
Identity = 169/200 (84.50%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIG-------------- 60
           M TPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIG              
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  ----------MKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
                     MKNVQW+HDLFEDSLRASGISGI+IGTKLYVSNLDYGVTKEDI+ELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 177
           GD+KRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV
Sbjct: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

[Close]

BLAST of HG10011271 vs. ExPASy TrEMBL
Match: A0A6J1CP51 (THO complex subunit 4D-like OS=Momordica charantia OX=3673 GN=LOC111013262 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 7.1e-85
Identity = 171/200 (85.50%), Postives = 175/200 (87.50%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIG-------------- 60
           MATPLDMSLED+IKKNNREKLRARGRARRGRGAGGSFNGGR VVIG              
Sbjct: 1   MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGR-VVIGSIRRGPLSINTRPS 60

Query: 61  ----------MKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
                     MKNVQW+HDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 177
           GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE+LGDNAEMPV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEILGDNAEMPV 180

[Close]

BLAST of HG10011271 vs. TAIR 10
Match: AT5G37720.1 (ALWAYS EARLY 4 )

HSP 1 Score: 200.7 bits (509), Expect = 1.0e-51
Identity = 108/202 (53.47%), Postives = 145/202 (71.78%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRAR-RGRGAGGSFNGGRGV---------------- 60
           M+  L+M+L++++K+    +   RG +R RGRG GG   GGRG                 
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGG---GGRGAGPARRGPLAVNARPSS 60

Query: 61  ------VIGMKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIG 120
                 V  ++++ W+  LFED LRA+G SG+E+GT+L+V+NLD GVT EDIRELFSEIG
Sbjct: 61  FTINKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFSEIG 120

Query: 121 DLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AEMP 176
           +++R+AIHYDKNGRPSG+AEVVY RRSDAF ALK+YNNVLLDG+PM++E+LG N  +E P
Sbjct: 121 EVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSEAP 180

[Close]

BLAST of HG10011271 vs. TAIR 10
Match: AT5G37720.2 (ALWAYS EARLY 4 )

HSP 1 Score: 200.7 bits (509), Expect = 1.0e-51
Identity = 108/202 (53.47%), Postives = 145/202 (71.78%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRAR-RGRGAGGSFNGGRGV---------------- 60
           M+  L+M+L++++K+    +   RG +R RGRG GG   GGRG                 
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGG---GGRGAGPARRGPLAVNARPSS 60

Query: 61  ------VIGMKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIG 120
                 V  ++++ W+  LFED LRA+G SG+E+GT+L+V+NLD GVT EDIRELFSEIG
Sbjct: 61  FTINKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFSEIG 120

Query: 121 DLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AEMP 176
           +++R+AIHYDKNGRPSG+AEVVY RRSDAF ALK+YNNVLLDG+PM++E+LG N  +E P
Sbjct: 121 EVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSEAP 180

[Close]

BLAST of HG10011271 vs. TAIR 10
Match: AT1G66260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.6e-49
Identity = 104/210 (49.52%), Postives = 147/210 (70.00%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRA-----RGRARR-GRGAGGS---FNGGRG--------- 60
           M+  L+M+L++++KK+  E+  A     +G +R+ GRG GG      GGRG         
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGGGPVRRGPL 60

Query: 61  --------------VVIGMKNVQW--KHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTK 120
                         +    +++ W  ++DL+E++LRA G+SG+E+GT +Y++NLD GVT 
Sbjct: 61  AVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGVTN 120

Query: 121 EDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE 176
           EDIREL++EIG+LKR+AIHYDKNGRPSGSAEVVY RRSDA  A+++YNNVLLDG+PMK+E
Sbjct: 121 EDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMKLE 180

[Close]

BLAST of HG10011271 vs. TAIR 10
Match: AT1G66260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.6e-49
Identity = 104/210 (49.52%), Postives = 147/210 (70.00%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRA-----RGRARR-GRGAGGS---FNGGRG--------- 60
           M+  L+M+L++++KK+  E+  A     +G +R+ GRG GG      GGRG         
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGGGPVRRGPL 60

Query: 61  --------------VVIGMKNVQW--KHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTK 120
                         +    +++ W  ++DL+E++LRA G+SG+E+GT +Y++NLD GVT 
Sbjct: 61  AVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGVTN 120

Query: 121 EDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE 176
           EDIREL++EIG+LKR+AIHYDKNGRPSGSAEVVY RRSDA  A+++YNNVLLDG+PMK+E
Sbjct: 121 EDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMKLE 180

[Close]

BLAST of HG10011271 vs. TAIR 10
Match: AT5G59950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 151.8 bits (382), Expect = 5.4e-37
Identity = 82/168 (48.81%), Postives = 108/168 (64.29%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGMKNVQ--------- 60
           M+T LDMSL+D+I KN   K R      RG G+G      R      K+ +         
Sbjct: 1   MSTGLDMSLDDMIAKN--RKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAPE 60

Query: 61  --WKHDLF----EDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIH 120
             W HD+F    ED       +GIE GTKLY+SNLDYGV  EDI+ELF+E+G+LKR+ +H
Sbjct: 61  STWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVH 120

Query: 121 YDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE 154
           +D++GR  G+AEVVY+RR DA AA+K+YN+V LDGKPMKIE++G N +
Sbjct: 121 FDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQ 166

The following BLAST results are available for this feature:

BLAST of HG10011271 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896761.1	3.5e-86	85.50	THO complex subunit 4D-like [Benincasa hispida]	[more]
XP_008457020.1	4.5e-86	85.50	PREDICTED: THO complex subunit 4D [Cucumis melo]	[more]
XP_022935328.1	1.3e-85	85.50	THO complex subunit 4D-like [Cucurbita moschata] >XP_022935329.1 THO complex sub...	[more]
XP_023527122.1	1.3e-85	85.50	THO complex subunit 4D [Cucurbita pepo subsp. pepo]	[more]
XP_022982649.1	1.3e-85	85.50	THO complex subunit 4D-like [Cucurbita maxima] >XP_022982650.1 THO complex subun...	[more]

BLAST of HG10011271 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQ72	1.4e-50	53.47	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
Q94EH8	2.3e-48	49.52	THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1	[more]
Q8L773	1.3e-35	48.24	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
Q8L719	6.5e-35	46.07	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
B5FXN8	1.2e-28	41.44	THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1	[more]

BLAST of HG10011271 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C452	2.2e-86	85.50	THO complex subunit 4D OS=Cucumis melo OX=3656 GN=LOC103496802 PE=4 SV=1	[more]
A0A6J1J564	6.4e-86	85.50	THO complex subunit 4D-like OS=Cucurbita maxima OX=3661 GN=LOC111481464 PE=4 SV=...	[more]
A0A6J1FAB9	6.4e-86	85.50	THO complex subunit 4D-like OS=Cucurbita moschata OX=3662 GN=LOC111442248 PE=4 S...	[more]
A0A0A0L717	1.1e-85	84.50	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G302100 PE=4 SV...	[more]
A0A6J1CP51	7.1e-85	85.50	THO complex subunit 4D-like OS=Momordica charantia OX=3673 GN=LOC111013262 PE=4 ...	[more]

BLAST of HG10011271 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G37720.1	1.0e-51	53.47	ALWAYS EARLY 4	[more]
AT5G37720.2	1.0e-51	53.47	ALWAYS EARLY 4	[more]
AT1G66260.1	1.6e-49	49.52	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G66260.2	1.6e-49	49.52	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.3	5.4e-37	48.81	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 74..146 e-value: 8.3E-19 score: 78.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 75..143 e-value: 3.5E-15 score: 55.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 73..150 score: 15.203922
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 70..149 e-value: 4.9E-22 score: 79.9
None	No IPR available	PANTHER	PTHR19965:SF33	THO COMPLEX SUBUNIT 4C	coord: 1..176
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..176
None	No IPR available	CDD	cd12680	RRM_THOC4	coord: 73..147 e-value: 1.76639E-42 score: 134.689
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 35..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011271.1	HG10011271.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding