HG10014711 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10014711
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Beta-glucosidase BoGH3B-like
Location	Chr02: 18316393 .. 18316677 (-)
RNA-Seq Expression	HG10014711
Synteny	HG10014711

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTTTGGCTGCTGCTTTGCTGCCTGACCGTTACTACAGATGCAACTTACCTGAAATACAAAGACCCTAAACAGCCATTGGGTGCTAGAATCAAAGATCTTATGGGTCGGATGACTTTGGAAGAAAAAATTGGCCAAATGGTTGAGATTGAACAGAAAGTTGCAACCCCGGACGTCATGAAGAACTATTTCATTGAGAGTGTACTGAGCGGAGGAGGGAGTGCACTAGCGGAGAAAGCAACGGCGGAGACTTGGGTCAATATGGTGAATGAGATCCAATAG

mRNA sequence

ATGGGGTTTTGGCTGCTGCTTTGCTGCCTGACCGTTACTACAGATGCAACTTACCTGAAATACAAAGACCCTAAACAGCCATTGGGTGCTAGAATCAAAGATCTTATGGGTCGGATGACTTTGGAAGAAAAAATTGGCCAAATGGTTGAGATTGAACAGAAAGTTGCAACCCCGGACGTCATGAAGAACTATTTCATTGAGAGTGTACTGAGCGGAGGAGGGAGTGCACTAGCGGAGAAAGCAACGGCGGAGACTTGGGTCAATATGGTGAATGAGATCCAATAG

Coding sequence (CDS)

ATGGGGTTTTGGCTGCTGCTTTGCTGCCTGACCGTTACTACAGATGCAACTTACCTGAAATACAAAGACCCTAAACAGCCATTGGGTGCTAGAATCAAAGATCTTATGGGTCGGATGACTTTGGAAGAAAAAATTGGCCAAATGGTTGAGATTGAACAGAAAGTTGCAACCCCGGACGTCATGAAGAACTATTTCATTGAGAGTGTACTGAGCGGAGGAGGGAGTGCACTAGCGGAGAAAGCAACGGCGGAGACTTGGGTCAATATGGTGAATGAGATCCAATAG

Protein sequence

MGFWLLLCCLTVTTDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMVEIEQKVATPDVMKNYFIESVLSGGGSALAEKATAETWVNMVNEIQ

Homology

[Close]

BLAST of HG10014711 vs. NCBI nr
Match: XP_038879149.1 (beta-glucosidase BoGH3B-like [Benincasa hispida] >XP_038879150.1 beta-glucosidase BoGH3B-like [Benincasa hispida])

HSP 1 Score: 178.3 bits (451), Expect = 3.0e-41
Identity = 87/94 (92.55%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1   MGFWLLLCCLTVTTDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMVEIEQKVATPDV 60
           MGFWLLLCCL V TDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMV+IE+KVATPDV
Sbjct: 9   MGFWLLLCCLAVATDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMVQIERKVATPDV 68

Query: 61  MKNYFIESVLSGGGSALAEKATAETWVNMVNEIQ 95
           MKNYFI SVLSGGGS  AEKATAETWVNMVNEIQ
Sbjct: 69  MKNYFIGSVLSGGGSVPAEKATAETWVNMVNEIQ 102

[Close]

BLAST of HG10014711 vs. NCBI nr
Match: XP_004137360.1 (uncharacterized protein LOC101204835 [Cucumis sativus] >XP_011649288.1 uncharacterized protein LOC101204835 [Cucumis sativus] >KGN63896.1 hypothetical protein Csa_013618 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 4.4e-40
Identity = 85/94 (90.43%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1   MGFWLLLCCLTVTTDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMVEIEQKVATPDV 60
           MGFWLLLCCL V TDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMV+IE+ VATPDV
Sbjct: 9   MGFWLLLCCLVVATDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMVQIERAVATPDV 68

Query: 61  MKNYFIESVLSGGGSALAEKATAETWVNMVNEIQ 95
           MKNYFI SVLSGGGS  AEKA+AETWVNMVNEIQ
Sbjct: 69  MKNYFIGSVLSGGGSVPAEKASAETWVNMVNEIQ 102

[Close]

BLAST of HG10014711 vs. NCBI nr
Match: XP_008453517.1 (PREDICTED: beta-glucosidase BoGH3B-like [Cucumis melo] >XP_008453518.1 PREDICTED: beta-glucosidase BoGH3B-like [Cucumis melo] >KAA0058158.1 beta-glucosidase BoGH3B-like [Cucumis melo var. makuwa] >TYK28516.1 beta-glucosidase BoGH3B-like [Cucumis melo var. makuwa])

HSP 1 Score: 174.5 bits (441), Expect = 4.4e-40
Identity = 85/94 (90.43%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1   MGFWLLLCCLTVTTDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMVEIEQKVATPDV 60
           MGFWLLLCCL V TDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMV+IE+ VATPDV
Sbjct: 9   MGFWLLLCCLVVATDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMVQIERAVATPDV 68

Query: 61  MKNYFIESVLSGGGSALAEKATAETWVNMVNEIQ 95
           MKNYFI SVLSGGGS  AEKA+AETWVNMVNEIQ
Sbjct: 69  MKNYFIGSVLSGGGSVPAEKASAETWVNMVNEIQ 102

[Close]

BLAST of HG10014711 vs. NCBI nr
Match: XP_022933885.1 (uncharacterized protein LOC111441165 [Cucurbita moschata])

HSP 1 Score: 174.1 bits (440), Expect = 5.7e-40
Identity = 85/94 (90.43%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1   MGFWLLLCCLTVTTDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMVEIEQKVATPDV 60
           +GFWLLLCCL V TDATYLKY+DPKQPLGARIKDLM RMTLEEKIGQMV+IE+KVATPDV
Sbjct: 9   LGFWLLLCCLAVLTDATYLKYQDPKQPLGARIKDLMDRMTLEEKIGQMVQIERKVATPDV 68

Query: 61  MKNYFIESVLSGGGSALAEKATAETWVNMVNEIQ 95
           MKNYFI SVLSGGGSA AEKATAETWVNMVNEIQ
Sbjct: 69  MKNYFIGSVLSGGGSAPAEKATAETWVNMVNEIQ 102

[Close]

BLAST of HG10014711 vs. NCBI nr
Match: XP_023530531.1 (uncharacterized protein LOC111793059 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.1 bits (440), Expect = 5.7e-40
Identity = 85/94 (90.43%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1   MGFWLLLCCLTVTTDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMVEIEQKVATPDV 60
           +GFWLLLCCL V TDATYLKY+DPKQPLGARIKDLM RMTLEEKIGQMV+IE+KVATPDV
Sbjct: 9   LGFWLLLCCLAVLTDATYLKYQDPKQPLGARIKDLMDRMTLEEKIGQMVQIERKVATPDV 68

Query: 61  MKNYFIESVLSGGGSALAEKATAETWVNMVNEIQ 95
           MKNYFI SVLSGGGSA AEKATAETWVNMVNEIQ
Sbjct: 69  MKNYFIGSVLSGGGSAPAEKATAETWVNMVNEIQ 102

[Close]

BLAST of HG10014711 vs. ExPASy TrEMBL
Match: A0A1S3BXL6 (beta-glucosidase BoGH3B-like OS=Cucumis melo OX=3656 GN=LOC103494201 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.1e-40
Identity = 85/94 (90.43%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1   MGFWLLLCCLTVTTDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMVEIEQKVATPDV 60
           MGFWLLLCCL V TDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMV+IE+ VATPDV
Sbjct: 9   MGFWLLLCCLVVATDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMVQIERAVATPDV 68

Query: 61  MKNYFIESVLSGGGSALAEKATAETWVNMVNEIQ 95
           MKNYFI SVLSGGGS  AEKA+AETWVNMVNEIQ
Sbjct: 69  MKNYFIGSVLSGGGSVPAEKASAETWVNMVNEIQ 102

[Close]

BLAST of HG10014711 vs. ExPASy TrEMBL
Match: A0A5D3DXL9 (Beta-glucosidase BoGH3B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G001580 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.1e-40
Identity = 85/94 (90.43%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1   MGFWLLLCCLTVTTDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMVEIEQKVATPDV 60
           MGFWLLLCCL V TDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMV+IE+ VATPDV
Sbjct: 9   MGFWLLLCCLVVATDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMVQIERAVATPDV 68

Query: 61  MKNYFIESVLSGGGSALAEKATAETWVNMVNEIQ 95
           MKNYFI SVLSGGGS  AEKA+AETWVNMVNEIQ
Sbjct: 69  MKNYFIGSVLSGGGSVPAEKASAETWVNMVNEIQ 102

[Close]

BLAST of HG10014711 vs. ExPASy TrEMBL
Match: A0A0A0LV53 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025780 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.1e-40
Identity = 85/94 (90.43%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1   MGFWLLLCCLTVTTDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMVEIEQKVATPDV 60
           MGFWLLLCCL V TDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMV+IE+ VATPDV
Sbjct: 9   MGFWLLLCCLVVATDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMVQIERAVATPDV 68

Query: 61  MKNYFIESVLSGGGSALAEKATAETWVNMVNEIQ 95
           MKNYFI SVLSGGGS  AEKA+AETWVNMVNEIQ
Sbjct: 69  MKNYFIGSVLSGGGSVPAEKASAETWVNMVNEIQ 102

[Close]

BLAST of HG10014711 vs. ExPASy TrEMBL
Match: A0A6J1F630 (Beta-glucosidase OS=Cucurbita moschata OX=3662 GN=LOC111441165 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.8e-40
Identity = 85/94 (90.43%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1   MGFWLLLCCLTVTTDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMVEIEQKVATPDV 60
           +GFWLLLCCL V TDATYLKY+DPKQPLGARIKDLM RMTLEEKIGQMV+IE+KVATPDV
Sbjct: 9   LGFWLLLCCLAVLTDATYLKYQDPKQPLGARIKDLMDRMTLEEKIGQMVQIERKVATPDV 68

Query: 61  MKNYFIESVLSGGGSALAEKATAETWVNMVNEIQ 95
           MKNYFI SVLSGGGSA AEKATAETWVNMVNEIQ
Sbjct: 69  MKNYFIGSVLSGGGSAPAEKATAETWVNMVNEIQ 102

[Close]

BLAST of HG10014711 vs. ExPASy TrEMBL
Match: A0A6J1C0J8 (uncharacterized protein LOC111007174 OS=Momordica charantia OX=3673 GN=LOC111007174 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.7e-40
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1   MGFWLLLCCLTVTTDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMVEIEQKVATPDV 60
           +GFWLLLCCL V TDATYLKY+DPKQPLGARIKDLMGRMTLEEKIGQMV+IE+KVATPDV
Sbjct: 9   VGFWLLLCCLAVVTDATYLKYEDPKQPLGARIKDLMGRMTLEEKIGQMVQIERKVATPDV 68

Query: 61  MKNYFIESVLSGGGSALAEKATAETWVNMVNEIQ 95
           MKNYFI SVLSGGGS  AEKATAE WVNMVNEIQ
Sbjct: 69  MKNYFIGSVLSGGGSVPAEKATAEAWVNMVNEIQ 102

[Close]

BLAST of HG10014711 vs. TAIR 10
Match: AT5G20950.1 (Glycosyl hydrolase family protein )

HSP 1 Score: 138.7 bits (348), Expect = 2.5e-33
Identity = 68/90 (75.56%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 5  LLLCCLTVTTDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMVEIEQKVATPDVMKNY 64
          +LLCC+    + T LKYKDPKQPLGARI+DLM RMTL+EKIGQMV+IE+ VATP+VMK Y
Sbjct: 11 MLLCCIVAAAEGT-LKYKDPKQPLGARIRDLMNRMTLQEKIGQMVQIERSVATPEVMKKY 70

Query: 65 FIESVLSGGGSALAEKATAETWVNMVNEIQ 95
          FI SVLSGGGS  +EKAT ETWVNMVNEIQ
Sbjct: 71 FIGSVLSGGGSVPSEKATPETWVNMVNEIQ 99

[Close]

BLAST of HG10014711 vs. TAIR 10
Match: AT5G20950.2 (Glycosyl hydrolase family protein )

HSP 1 Score: 138.7 bits (348), Expect = 2.5e-33
Identity = 68/90 (75.56%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 5  LLLCCLTVTTDATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMVEIEQKVATPDVMKNY 64
          +LLCC+    + T LKYKDPKQPLGARI+DLM RMTL+EKIGQMV+IE+ VATP+VMK Y
Sbjct: 11 MLLCCIVAAAEGT-LKYKDPKQPLGARIRDLMNRMTLQEKIGQMVQIERSVATPEVMKKY 70

Query: 65 FIESVLSGGGSALAEKATAETWVNMVNEIQ 95
          FI SVLSGGGS  +EKAT ETWVNMVNEIQ
Sbjct: 71 FIGSVLSGGGSVPSEKATPETWVNMVNEIQ 99

[Close]

BLAST of HG10014711 vs. TAIR 10
Match: AT5G04885.1 (Glycosyl hydrolase family protein )

HSP 1 Score: 107.1 bits (266), Expect = 8.0e-24
Identity = 54/92 (58.70%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 5   LLLCCLTVTT--DATYLKYKDPKQPLGARIKDLMGRMTLEEKIGQMVEIEQKVATPDVMK 64
           LL  C+ V    D  YL YKDPKQ +  R+ DL GRMTLEEKIGQMV+I++ VAT ++M+
Sbjct: 12  LLWMCMWVCCYGDGEYLLYKDPKQTVSDRVADLFGRMTLEEKIGQMVQIDRSVATVNIMR 71

Query: 65  NYFIESVLSGGGSALAEKATAETWVNMVNEIQ 95
           +YFI SVLSGGGSA   +A+A+ WV+M+NE Q
Sbjct: 72  DYFIGSVLSGGGSAPLPEASAQNWVDMINEYQ 103

[Close]

BLAST of HG10014711 vs. TAIR 10
Match: AT5G20940.1 (Glycosyl hydrolase family protein )

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-23
Identity = 55/93 (59.14%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 5   LLLCCLTVTTDATYL---KYKDPKQPLGARIKDLMGRMTLEEKIGQMVEIEQKVATPDVM 64
           LLL C TV  +   L   KYKDPK+PLG RIK+LM  MTLEEKIGQMV++E+  AT +VM
Sbjct: 13  LLLLCCTVAANKVPLANAKYKDPKEPLGVRIKNLMSHMTLEEKIGQMVQVERVNATTEVM 72

Query: 65  KNYFIESVLSGGGSALAEKATAETWVNMVNEIQ 95
           + YF+ SV SGGGS        E WVNMVNE+Q
Sbjct: 73  QKYFVGSVFSGGGSVPKPYIGPEAWVNMVNEVQ 105

[Close]

BLAST of HG10014711 vs. TAIR 10
Match: AT3G47000.1 (Glycosyl hydrolase family protein )

HSP 1 Score: 77.4 bits (189), Expect = 6.8e-15
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 21 YKDPKQPLGARIKDLMGRMTLEEKIGQMVEIEQKVATPDVMKNYFIESVLSGGGSALAEK 80
          YK+   P+ AR+KDL+ RMTL EKIGQM +IE++VA+P    ++FI SVL+ GGS   E 
Sbjct: 10 YKNGDAPVEARVKDLLSRMTLPEKIGQMTQIERRVASPSAFTDFFIGSVLNAGGSVPFED 69

Query: 81 ATAETWVNMVNEIQ 95
          A +  W +M++  Q
Sbjct: 70 AKSSDWADMIDGFQ 83

The following BLAST results are available for this feature:

BLAST of HG10014711 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879149.1	3.0e-41	92.55	beta-glucosidase BoGH3B-like [Benincasa hispida] >XP_038879150.1 beta-glucosidas...	[more]
XP_004137360.1	4.4e-40	90.43	uncharacterized protein LOC101204835 [Cucumis sativus] >XP_011649288.1 uncharact...	[more]
XP_008453517.1	4.4e-40	90.43	PREDICTED: beta-glucosidase BoGH3B-like [Cucumis melo] >XP_008453518.1 PREDICTED...	[more]
XP_022933885.1	5.7e-40	90.43	uncharacterized protein LOC111441165 [Cucurbita moschata]	[more]
XP_023530531.1	5.7e-40	90.43	uncharacterized protein LOC111793059 [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10014711 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10014711 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BXL6	2.1e-40	90.43	beta-glucosidase BoGH3B-like OS=Cucumis melo OX=3656 GN=LOC103494201 PE=3 SV=1	[more]
A0A5D3DXL9	2.1e-40	90.43	Beta-glucosidase BoGH3B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0A0LV53	2.1e-40	90.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025780 PE=3 SV=1	[more]
A0A6J1F630	2.8e-40	90.43	Beta-glucosidase OS=Cucurbita moschata OX=3662 GN=LOC111441165 PE=3 SV=1	[more]
A0A6J1C0J8	4.7e-40	89.36	uncharacterized protein LOC111007174 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of HG10014711 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20950.1	2.5e-33	75.56	Glycosyl hydrolase family protein	[more]
AT5G20950.2	2.5e-33	75.56	Glycosyl hydrolase family protein	[more]
AT5G04885.1	8.0e-24	58.70	Glycosyl hydrolase family protein	[more]
AT5G20940.1	1.8e-23	59.14	Glycosyl hydrolase family protein	[more]
AT3G47000.1	6.8e-15	48.65	Glycosyl hydrolase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036962	Glycoside hydrolase, family 3, N-terminal domain superfamily	GENE3D	3.20.20.300		coord: 14..94 e-value: 1.2E-19 score: 72.4
None	No IPR available	PANTHER	PTHR30620	PERIPLASMIC BETA-GLUCOSIDASE-RELATED	coord: 4..94
None	No IPR available	PANTHER	PTHR30620:SF106	BNAC09G36920D PROTEIN	coord: 4..94
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	51445	(Trans)glycosidases	coord: 18..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10014711.1	HG10014711.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009251	glucan catabolic process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0008422	beta-glucosidase activity
molecular_function	GO:0102483	scopolin beta-glucosidase activity
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds