HG10001891 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001891
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Polyadenylate-binding protein 1-like
Location	Chr11: 1435434 .. 1446804 (-)
RNA-Seq Expression	HG10001891
Synteny	HG10001891

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTCCCCATCCTCATCCTTATTTACCTCACGGGGAATTTTGTCTCACCACTTCCTCCTCATTCCTCGTCCAGATAGGGATTCTCCACCAGCCCTGTCTCCATGGGGAAAACGAACATATGTCTGTGTCATAACTATTTTTATATTTGCAAATGCCTCTAATAGTTGCATTAGGTAACACTTTGCGCGTACCATTCAAAGTTAGGTTAAGTTAAATTGGTAATAATTGTTTGTGGGCAATAATTGTCTATGTTGGTAATAATTGTGTATTTGGGTGCAAGCTTAGGTTGAGTTGAGTTATTAGTATGTGTTTTTTGTAATCTAAAAAGTTTGCATTTTTTTATTATTTTTGTTAAGCACAACTTTTTGTTTCACCATTCAACTACACACATCTTTTACTAAAAATTTTAACACTTAGAGATGTGAACTTAATGAATAAAAAATATATTTTACAATTTTCTAATGTAACTATTGTACTTGACGTAGATAAAATACCATTATTTATATAATCAACAATCTTAAATACATATTTTAATAGTAGTGGAACCCATGAGTTGAATATGCACAAAAAATAGGATTGTCATTAGTGATTTATTTACATGTCCACAAAAAATATATAAACACCACCAACAATTGACCTTAAGCTGTGAGGTCCCTCTCTCCTTTAAGTAAAATACCTTTGTAGAAAAAAAAATACATTTTTGTTGGTATAGTCGTATAATTCTCTCAAACTTATTTGAATCAAGGTTTAAAATATTGAGATCTCAATATTTTGAAAATGTAAATGGAAATATTAGTAAAAAAAAAAATGCCAGTGAATAGATTTTTTTTTAATATTTATAAAAATAAGAAGGGCAAATTGCAAAAACTACCCTAAATTATGGTTATGGTTACAATCTTACCCTTAAACTTTGAATTTTAAAAGTCAAGACCTTAAACTTCTACATTGGCAAAAAATGGGTCCTTCCCCGGTTAAGTACAAATTATGTTAACCATGCTCGTTTAAAAAAATTTGTAAGAAAAAAAAGAAATTGTCGTGTGATGTGACACTTTGGTAGTATAAAAAAAGTTTAAAGACATTTCTAGGTGTGTTTGGCCAAGTAGTTGGGAAGTAGTACTTGTGAACTCTACTCCTTGTTTCGTTCAATGATTTGGTAGATCCAACAAGAGTTTGATCAGCTGACATCTGAGTATATCCAACTACTTCCTACACTTCATAGCTCCTTACTCCTCGCTATTCTACTCTTGATCACAAACATCTCTTTCATTTATGTACCCCTTGCAAACTTAGAAAAATTGCATAGAGGATCCCTAATGAAAATTAGCCTCAAATTTAGAAACTAATGAGTTTTGGTCCTTTGCTTGTATCAACACCACGTGGACTTACCACTTTAACCCTAAATCGACTTTTTTCTTCTTCCTTATTATTTTCTTGTTCCCATTTGTTTTCTTCTTCTTCATTTTTTCTTGTGTTTTTCTTCTTATTCTTATTATTTGTTCTGCTTTTCTCTTATTATTCTTCCTAATTTTTTTATGCGTATTCTTCTTCTTCATTTTTTTCTCTGTGTGTGTTTTTTTTTATTCTTCCTTTTTTTTCATGCGTTTTTCTTCTTCCTTTGCATTTTATTCGTCTGCCCTCTTATTGTACCTAAGGAGTGAGATCAAGAAGCAAGAAACGAGAAGAAGAATCGAGGATTGAATAAGAAGAATCGAAGGTAAGCGTTGATGAGGGAAAAAATTAAAGAAGCGATATGTAGGAGCGATAAGCGAGATTAAGTTTGTTCTCAGTCCATTTGCATGTTGAATTGATAATTTCATAGCACGCTTACATCAAGAGAATGCCAAATTTCAAATCATGGGCCAAATTTCATTTATGCAGGGGTCATCCGTATGAAGATCCTTGTGAACTTGGATATTACATTCAAACTTTCATACCACACATCTTTGTACTTTTCAGAGTTTTTTCTTTCCAAATATAAGATTGAATTTTATGCCTGCAACTCTTAACTTTCAATTTTGTAACTAGCGTATCCATTAATTTTAAATAATATCAAATTTATAATTTTAAAAGACACAAAGCTCAAATTTATATCAAAGTGAGTTTAATTGACATGACCTTCCTCACTAAAAATTGAAGGTTCGACCTGTATCCAACCGTTGTTATAATAAAAAAATCTCAAAATTCATTAAATTTGTATTTTAACCTTAAAAAATAAATGAAGAACTAGGGAATATTATAGTTTGGTTAAATTGTAAAATTAGTCCCTATAGTTTGAAGATTTTATCAAACCATAGAAATTATTTAAGAAATTTTATTAAATTACAAGAACTAAATTATAACTTTTAAAATGATAGGGATTAAATTTATAATTTAACCTTATATTTTTATAAATAGATATATCAATAATAATAATAAATAAATAAATAAAAAAGAAAGAGCAGGAATATGAAAACCAGAGTCGCAGACAGGATCCGAAACCTAATCTTCAGCAATTGGGAACCAGTAGACAAAATACACATACCAACCAGCGATCGAGGGGCCACCGGAGACGGAGACGGAGACGGAGATGGAGCGCAATTTTAACTACGACGAGCACGAACACGAAGTCTACGGTGGCGATATTCCCGACGACGCCGAGATGGATGCCGACCTCGACATGTCCTCTGGTAGGGCCGACGAAGAAGGCTACGACGCCGAGCCTAGTAACGCCAACTCCAAGGTATGCTTTTCCACTTCTTCCGAGTCTCTTTCATGGAGTCTTGTCTCTGATTCGCTGTATTTTCGAATTAATCAGGACTTGGAGGACATGAAGAGGAGGCTTAAGGAGATCGAAGAGGAGGCCGGTGCCCTTCGGGAAATGCAGGCCAAAGTTGAGAAGGAGATGGGTGCTGTTCAAGGTATCTCCCTCTTTTATTTCTGTAATTCAGTAAGTTGGTTCTTGATGTTGTGGGAGGATTTAGGTTAGTTTAATTGGCTTTGCAGTTGTTCTTCTTTACAAGAACAGACAAAAAAAAAAAAAACTAGTTTTAACCTTTAAGACTGTTCACATGTTTTCATATCGAAAGGATTGAATATAGCTGTCCGATTCGAGAATCAGGTTGCGTGAAGTTCTAAGAGCTGTTTGGGTTTATCCTTATTGTCTTTTTTGTACTTGAAGGATGCAAAGGGGTTTTTTGGTATTCAAGTTTCAGAGAGTCTAGAAATTGGCGTGGTTTGCAATGAAGAGATGTTGGAGGAAAATAGGAGGGTTTTGTGATTAACGGAGGTTGTCAAAGAGTTCTTTAATGGATTAAGAGTCCCTGGTGGGAAGTTTGGTGGTTGGTCTACGATGAGGTTCGATACCTATCTTTAGTGTCCATATGGCGTAACCAAGGAGTTCAATAATCCTCATGTCTCTTTTTTCTAAACAATCTAAGCCCAATTTAGTATGCAATGTACTTCTTCAAATTTGGTTTTTCATAAAAACAAAACAAAACATAGTTAGATATTGAAAGTTCTGAAGCTTTGTGAGTTTTTATTTATGATTGTTATGTCAAATAGGTGCAAAGCGTTCTTAGATTTTTGCTGGCAATCTAGTTTTAACCCTTTCTATATTTCAATGATATTTGACAAATTTTTTCTAATGTTTGTCTTTCATCTGGGTGGAATGGAAGTTGAGTTCTCTCTTGTTTCTAGAAATTTTGTCATATTTGAGTAATTTTCTAAAGGGTGAAACAATTAGGTCGCTTTAATATTGTCAAATTTTTATTATATTTCACTTATCAACGAAACAATCGATTGTTTTAATGTACCCTCACTTCCTTCCAGTTGTAGGTATATTGCATTTCTAGCTGTTCTAAACTTTATGAACTTTCAGTTTGTGAAATATGCAAGATGCATGTGTTCTATGTAGCATCCATGCCTGCTCATTATATACATTCTAAGATTTTTTTCTGATGTATATACTGCTCCTTTTCTTGTCATCATTTTATCCTCTTTTTGTTGGTGACAAAATATTAATCAGTGAAAGTTCATCTCATACTTCGGTTAACAATCTTTTTTGGGTATGAAGTTTGTTTGTAATTAACTTGTGTTTCTTTTAACATGTAAGAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATTCTCGATCGGTATATGTTGGTAATGTGAGATTTATCACCCCTTTCCTTTCGCTGTGTTATTTTCATATTAAAGTTTTGCAGTACAAAATTTCTAGTATTACACCTTTAGCTCTGATCTCATATTATTCTCTTTTGTTGTCCGACAAACCATCATGCCTTTGCTATTTATGCTTGAACTATTTAACGTACGTCGTACTGGAATAAAATGTTGAAAAGTTTCTATACTTGTTAAGGCTCTATTTGACAACCATTTTATTTTTGCTTTTTGTTTTTGAAAATTAAGCTTACAAACACTTCTTCTACCCACAACTTTTTTGATTTATTAAAACTTTTTTGACATGCTTTCAAAAACCAAGCTAAAATTTGAAAACTAAAAAAATAGATTTTGAATACTTGATTTTGTTTTTGAAATCTGGTTTTGAACTCAAACATGTTTTTTAAGGAAGATGAAGAGCTTACCAACAAATGGTGAGGAAGGAGGTATAAATTTCAAAAGTAGAAAACTAAAAGCAAAATGGTTTTAAAACTGTGCCTATCTCTTTTTAATTTCTTCTTTACTTTGAATGCCATCTTTTTTAAATGAAAATCGAGAGTTGAACTCAGATAAGAAATAAAAATCAATTATCATTAGGGAATGCCACACCACAAAACAAATCAGAAAATTTGATTCGAGTTTTTATACAAATTTTTGTGGCAAATTGTAAAGTTATTGCCACAACTTTCCAAACAGAAAGTGCATGTGAAAAAGACCTATGCAACAACTAGTTAGCTAAATCAGGGTTCAGGGACCTCTTCCTAGCCCATTCTCTTCTCATTGATAAGTGCCTTCATTCTTTCTTGCCTCAAATAAATGTATTATTTGTGTTGACTCATCATGATTTAGCTCACCTTTTTTATTTTATTAATAATTAAACTCTATGGCCATGCAGCAATTAGCTAACATTATATTCAGGCTACTTGAGTGAGCAAGTCCTTTAGGGAGTTGGAATGAAGAAGAGACCAAATTCAGCATGTTGTCAATATTGGAAGAATTTGAGAATTAATGGCCTTGGTTCTCCTTCTCTGCTTTCAAACAGAGCAAGCAACAGCTAGGACCTATATTTGGACATCTCTTTTCTAATCTATCCACTTTGTTGACACTCTGCCGGCAAAGGGTCCTAAGAATTGCTACGGTCCCCTTCCTGCTTGCATTGCATTAATCTAGCAAAGAAGTTCCAAAAAGTTTATTCAATTGTGTCTTCTTGTTGCTACCCTTCATGAATTGATGCTGCTATCATTGTGAGCTTCTTGCACTTGTTGATTCTTTCCCCAGTATTATCCTGCCAGAAGGAGCTTTTCCCACTATCTCTATTTGCAACTCTAGTTGTCGTGAAGTTATCAATGCGACATTTTAGTTTGCATACTCCCTTGAGGGCTACACACATTTCCAAACTTCCTTTCTCTCGTAAACCACCTTTACATTCTTTCACTTTTCATATATGCTAACCACCACCTTATGCCATAGAGCGTTAGACTCATCAAAAAATCTCAATAAATCCTCTTTGGGTTGAGAGGAACAATTGAACATTTAGAGGGTTTTAGAGACATTGGGAGGAAATTTAGGGTTTCACGCCTCCCTTTAGGCTTTAGTTAGCAAGGTTTCATGTAAAGATATTTGTAATTATTCATTAGGTCTCAATTGGCTTGATTGGAGACTTTTTTTATGGTAGTTTGGCTCCTTTTGGGGTTGTTTTCTTTGTGGCCTTGTTTTCTTTCATTTCTTTTGCTCAATGGAAGCTTGGTTTTCCATAAAATAATGATATCATGTTTTAGATGTGAAATATCATATGGTAATAATGAATTTGTAGGATATTTGTTTGAAGTTTATATATAATGTGTCAAGTCATTATCAGCTGGTACTAGGAATAATATCTTATCCATAGAATTCTAGATATAAAGATATTTTTCTTTTAACCTGATCCTAATCTAAAGTCCTGTTAAGTCTAGGCGGATGGCAGATTGAGATTCAAGTGTCTTTTCTCCTTGGGCATGCTTTTTTGCCTTTCTTCTAATTTCACAAGGCTTTCCAACATTATATTTCACTACAAAATGATTTAATATTTCTGTCGTGGTTTTTACTTCAGGTCGACTATGCATGCACTCCTGAAGAGGTCCAACAGCATTTTCAATCATGTGGAACAGTGAATAGAGTGACAATTTTGACGGACAAATTTGGTCACCCCAAGGGATTTGCTTATGTTGAGTTCGTGGAGGTTGATGCTGTCCAGAATGCTTTGCTGTTAAATGAGTCGGAGTTGCATGGTCGTCAACTAAAGGTCTGTCCTTTGAACCTGGCTTTACACTCTTTAACTTTCTGTTAATAATCTATTTGGATGCCAATAATGATATATATAAGAGGAAGTCATTGGGGGATGAGAGAAGTCGTGAGTGAAAGGTGTATCTAGAGGGGGAAAGTGTCTTAGGAGCGTTTGCTAGGGTGGGGAGAGTAGGAGCTTTCTGCACATCCCCGAGCTTGTATGCTGATTGTGGATACATAATATCGACTTTTATCACTGACCATGGCTTGCTTTGCAGGTCTCTGCTAAAAGGACGAACGTGCCTGGCATGAAGCAATACCGAGGAAGGAGGCCAAACCCTTTTGGCTTTCGAGGTCGCCGGCCTTTCATGCCTGCTGCACCTTATCCTTCGTATGGTTATGGGTAAGTGCTGAACTTCTATATTGCTTTTCACTATATGGTTGAAATATGCAAGTCTTAATGCATAGTACCATTCTGGGAGGATGGTCCATTTGTGTAGCTTTCTTTACATAGCCTCTGAGAGGTCATAGTTTTGGATCTTCCCGCTTCATATATGATGTAATATTAGAAGTCTTTCATGTTGACAGTATCATATGTAGGAATAAATATCCCTCCCAACTTTTCCTGTTCCATGATTGTAGATCGGGGACAGGTACATATACGATAGTGCCTACATGAAATGATTGTCATTCAGGTGTAGCAGACAAATTGCACTCTTTTAGTCTTTTAGAACGATCAACTTCTAATGTATATTGTTGAAAGGGAACTAGAGCATTGACTGTCCATTTCTTTTCTTCTCTCTTTGCTGACTGATTTGAAGGGATTTACGGAATGATATATTCATCTAATTGAAAAATTCAATTTCTTTCACTTTCAGCATTATAATGTGAGTTTCTATCTTCTTACTTTATGCAGAAGGGTTCCAAGGTTCAGGCGACCGATGCGATACAGACCGTACTAGGAGATACAATACTCGTACTACCGCAAATTATTGTTCGGGATCTACGGTTCCCTCGTCAAGGGTTCATTTACCATCTCTATAACTTGGAGGGTGTGGAAAACATTGTACTTTATTGATGTTTCAACAATCCCACTTGAGTTTTTTATGAACTTTGTAGCAGTTTCTAGCTTGAGGGGGTAAAGATTTGTGGTTTACATTTTGTTGGCTCTGGAAGGGCTAAAAAAACCATGTTATCAACCATTAGAGAATTTGAAGGAAAGAAAATTAAGGAAACTAAAGGACATATCCTTGTGTATGGTGAATTGGAACTGATCAGGATGTAGAATTCTTTGTTATTTTAAGAAGTAATTATAAGTTGATATGATATGTAAACCTACCCCATTTTTGCCCTCTCCAGTTTTATGGGTTTAGCTTAGCTCAACGGGTATAATAATAATCTTGATGAATAAGTTAGAGGTTAAATCTCGAACTTAAAAAAAATAGTTTATAATCTTAAAAAAGTTGGTTTCGTTGTACCTGTGATCTAAATTTTGGGCTTAAAATAAAATGTCTTACTTCTTAAAATCGAAAGAGAGAATGATATATTTGTTACTCATGATGATATAAACAAAACAACAAAATTATTAAGTTTTAGGACATTAAAACTACTTTTGTCATTTTTTAAATTATTTTGACGATGTGAAATTATATTTAAGAGAACAAAATTAAATATTTTTATAATTTCAAAATGCACTTAAAAAGTGGGCAAAGTCAATGAAATAATTGTGCAAAAAATCTGTTTTAACGGTCTAAAATGGCAAATGACAGTTTTTGAAAAAAGTGCCAAATGATCTAATTTTTGAAAAAAAGTGCCAAATGACCATTTGCTGATGTCATGATCACGTGAAGTTACGGTACTGCCCTTTCTTTCTTGATATATTTTTTTTTCTTTTTCCTCTCCTTCTCCCGTGCTCCTCGTCTTTCTCCCTCTCTTTTTTTTCCCCTTTGCACGTTATCTTTTTCTTCTCTGGCTTCTTCTTCCATGTACACTTCTTCTTCTCCGGTACGGTGAGTCCACACGAGAAGCTCCGACCCGACCAACTCCCGTGAACAAGAGCGAGAGTGAGAGAGAGAAAGAAGAGTAATTTTATGAGTGAGGAAAGGAAGAGAGTGAGAGAGAGAGATGAGAATGATTGTGAGCGAAGAAATGAAGAGAGAGCGAGATGACTTTTTCACGTGTACAAATTTATTTTAGTAATTTTACCCGAATGTAACGTCAGCGAAAAGTCATTTATCATTTTTTTTTCCAAAAAATGAGTCATTTGTGATTCTCAAATTTTGGGTTATCGGTACAAATTTACCAAAGTGGATCGGGGCTTTTATACAATTGTTAGCGCGGGCATGTTTCATTGTTTTTGCGTTGGGTAATCGATTTTCAATCGCTCGCAGCTCTGTGTTGAATGTAGCCATTGTTGAGAGCTTCGAAAGATATCACCATATCGCTCCACTACGAATCTTGTTGCTTCTTAATTTTGGGTTCAATTTGGAATTCGATTGCACGATATTAGACTTCGGCTGGTCAGATACAATGGCTTCTAATCATGGATTAAACGAAGAAGCAGCTGATAACCCGTCATCGTAAGTTTGTTTCTATTTTCATTCTCCTGTTCTATCATTTTCCCTCCTTCTTCATCTCTCTTTAACCAATTTTTTCTTTCATTTTGGATATGGCTTTAATTCTTCTTTTCTGTTCTGTTGCTGAGGGATTGATTTATTGGGCTCCTTGTGAATTGATCAATTTTCTCTTTCTATTTGGTGCATTATTACCAGGCCTACGAATGTTTACAAAGATCCTGATGACGGACGGCAGCGGTTCTTGCTCGAATTGGAATTTGTTCAATGTCTTGCCAATCCAACCTACATTCATTGTAAGTTTTTGCAAAATTTAGGGTTTCTTTATCGGGAGTTAGGCTGATTTCTTATACTTGAAACTTCAGCTTGAAGTGAGGAAAAAGCTATTGATGAAAAACGATGGAATTTCGAAAATGAAGCATTTCTCCAGTTTCTTCTCGTTGTGGTTAAAGAATTGCTTTCAAACCTTTTTAGTTTAATTTAGTTTCAATTTGGATTCCTAATCAGCTAACTAGACATGAAACTGTGCTTCACATGAAAAACAGCCAATCCAAAAGTAAATTCTACGTATTTCTTCTAATGATAAAGCAGGTTAAACTTATTTATATAATAAATGGCAGTGTAAAATGAAATATTCCCTTCAGTTCAAGCTATGGTGACCATCTATTTAATATCATGTGAGTTTCATTAAATACAGAATTGTTGTGGCTGTTCCAGTAGAATAGTTGAGGTATAAACAAGCTGCTTGAACGTTCATGGATATGAAAGAATAAAAAACTGTTAGCTCGAGTTTTTATGATATCATATCTCATGTAAATCATGTGTTTTATATGAATTTTGAACATGATTTTCTCAGTTGCATTTTCCTGTGAAGTTGTGACTATTGATCAGTGTGAAGAAGAAAATCACAATGAAAGATCAGATTTTGACATTCAGAACCAACGTTCATTCTAAATTTGCATCATCATGAGCTAGAGTAGTGCCTAGATGAAACTTTTTCTTTTATGCTTGTCGCCTGAGTCACTGGCTACTGCTGGTGCTGTGACTTACTGTTTTTACTTCAAAAACCAACTTATAATTTATCATAGATCAGTGCTCATCTGCTTGATTTTTTGGCCTATTAAGACATTCTAGCATTGTACAATTCCTTGCAGTGGTCCACTTATAGTGAATTTCCTCGAATTTTTTTCTTTTAATGATATGCTATAGTCTCTTACGACTGAAGTATGTTTCTGAAGTTGGCACTTAAATTTTTTGTGGTAGTCATCCTCACTTGGTCACTCGGATATGCTTCTTAACGAATGATGTATTTGCAAATTGGTATTGAAATGTTGGAACAAATGCTTTTTATGCTCTCAGTTCCGGTAGCTGATTACATCTATTTTTGTGCAGATCTGGCTCAGAATCGTTACCTCGAGGATGAAGCTTTTATTGGTTACTTGAAGTACCTTCAATATTGGCAACGGCCAGAGTATATTAAGTTTATAATGTGAGTCAGTTCTTTCCCTGAACTGAAGAATGAGAACCGATTGTGCTTTTGGTATTGACTTCAATGTTGTTTCTAGGTACCCTCATTGTCTTTTTTTCCTTGAACTTCTACAAAATTCAAACTTCCGAAATGCAATGGCTCATCCTGGCAACAAGGTTAGCTTCTGTTTTTTTTTATTTTCAACTTCCTCTTCGAGATCGGAAAATAAATATTTAGTTGGATGGTGAACTTTTTGTGTGCTCCCATCTGTGCATATCTCTGATAAATGCTCATTAGGCTTATATGTTTCGTTTCTGTTTGTAATGAGATGACAAAATTTAAAATGTCTCCCATGTCCACCGATTCATGAGCGATATTTGTTGCTTTCCAAATGGTTTGCTTTTAATGTGCTGATATGTCCCCTTTTCCTTTTTCTTAGTATTTTAACACAGTTGCATCATTTGGGATTTCTTAGGAATTGGCACACAGGCAACAATTTTACTTCTGGAAGAACTATAGGAACAATCGTTTGAAACACATTTTACCGCGACCTCTTCCCGAACCTGCAGCATTACCACCCCCAGTTTCTGCTCCACCTCAAGCACCTGTGCCGGCCCCAGCCCCCGCTATGGCAGCTTCACCTGCTGGTACACCTGCCCTTTCTCCGATGCAGTATGGTATTCCTCCTGGTTCTGGACTTCCAAAGAACGACATGAAGAGTGCAGGAATTGATCGACGAAAGAGAAAACACGTAATTTATAACATATCATTTGTTTGTTTATAAGTTATCAATGCACTCTACTAGTAGGTTAGAAGACATGCCTCTTACTTTATACCTTCAAATTCTCATTTACTTCTTTTGTGTTTTGACAGGAAAGAAGTATGACGTAG

mRNA sequence

ATGCATTCCCCATCCTCATCCTTATTTACCTCACGGGGAATTTTGTCTCACCACTTCCTCCTCATTCCTCGTCCAGATAGGGATTCTCCACCAGCCCTGTCTCCATGGGGAAAACGAACATATACAAAATACACATACCAACCAGCGATCGAGGGGCCACCGGAGACGGAGACGGAGACGGAGATGGAGCGCAATTTTAACTACGACGAGCACGAACACGAAGTCTACGGTGGCGATATTCCCGACGACGCCGAGATGGATGCCGACCTCGACATGTCCTCTGGTAGGGCCGACGAAGAAGGCTACGACGCCGAGCCTAGTAACGCCAACTCCAAGGACTTGGAGGACATGAAGAGGAGGCTTAAGGAGATCGAAGAGGAGGCCGGTGCCCTTCGGGAAATGCAGGCCAAAGTTGAGAAGGAGATGGGTGCTGTTCAAGAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATTCTCGATCGGTATATGTTGGTAATGTCGACTATGCATGCACTCCTGAAGAGGTCCAACAGCATTTTCAATCATGTGGAACAGTGAATAGAGTGACAATTTTGACGGACAAATTTGGTCACCCCAAGGGATTTGCTTATGTTGAGTTCGTGGAGGTTGATGCTGTCCAGAATGCTTTGCTGTTAAATGAGTCGGAGTTGCATGGTCGTCAACTAAAGGTCTCTGCTAAAAGGACGAACGTGCCTGGCATGAAGCAATACCGAGGAAGGAGGCCAAACCCTTTTGGCTTTCGAGGTCGCCGGCCTTTCATGCCTGCTGCACCTTATCCTTCGTATGGTTATGGCTCTGTGTTGAATGTAGCCATTGTTGAGAGCTTCGAAAGATATCACCATATCGCTCCACTACGAATCTTGTTGCTTCTTAATTTTGGGTTCAATTTGGAATTCGATTGCACGATATTAGACTTCGGCTGGTCAGATACAATGGCTTCTAATCATGGATTAAACGAAGAAGCAGCTGATAACCCGTCATCGCCTACGAATGTTTACAAAGATCCTGATGACGGACGGCAGCGGTTCTTGCTCGAATTGGAATTTGTTCAATGTCTTGCCAATCCAACCTACATTCATTATCTGGCTCAGAATCGTTACCTCGAGGATGAAGCTTTTATTGGTTACTTGAAGTACCTTCAATATTGGCAACGGCCAGAGTATATTAAGTTTATAATGTACCCTCATTGTCTTTTTTTCCTTGAACTTCTACAAAATTCAAACTTCCGAAATGCAATGGCTCATCCTGGCAACAAGGAATTGGCACACAGGCAACAATTTTACTTCTGGAAGAACTATAGGAACAATCGTTTGAAACACATTTTACCGCGACCTCTTCCCGAACCTGCAGCATTACCACCCCCAGTTTCTGCTCCACCTCAAGCACCTGTGCCGGCCCCAGCCCCCGCTATGGCAGCTTCACCTGCTGGTACACCTGCCCTTTCTCCGATGCAGTATGGTATTCCTCCTGGTTCTGGACTTCCAAAGAACGACATGAAGAGTGCAGGAATTGATCGACGAAAGAGAAAACACGAAAGAAGTATGACGTAG

Coding sequence (CDS)

ATGCATTCCCCATCCTCATCCTTATTTACCTCACGGGGAATTTTGTCTCACCACTTCCTCCTCATTCCTCGTCCAGATAGGGATTCTCCACCAGCCCTGTCTCCATGGGGAAAACGAACATATACAAAATACACATACCAACCAGCGATCGAGGGGCCACCGGAGACGGAGACGGAGACGGAGATGGAGCGCAATTTTAACTACGACGAGCACGAACACGAAGTCTACGGTGGCGATATTCCCGACGACGCCGAGATGGATGCCGACCTCGACATGTCCTCTGGTAGGGCCGACGAAGAAGGCTACGACGCCGAGCCTAGTAACGCCAACTCCAAGGACTTGGAGGACATGAAGAGGAGGCTTAAGGAGATCGAAGAGGAGGCCGGTGCCCTTCGGGAAATGCAGGCCAAAGTTGAGAAGGAGATGGGTGCTGTTCAAGAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATTCTCGATCGGTATATGTTGGTAATGTCGACTATGCATGCACTCCTGAAGAGGTCCAACAGCATTTTCAATCATGTGGAACAGTGAATAGAGTGACAATTTTGACGGACAAATTTGGTCACCCCAAGGGATTTGCTTATGTTGAGTTCGTGGAGGTTGATGCTGTCCAGAATGCTTTGCTGTTAAATGAGTCGGAGTTGCATGGTCGTCAACTAAAGGTCTCTGCTAAAAGGACGAACGTGCCTGGCATGAAGCAATACCGAGGAAGGAGGCCAAACCCTTTTGGCTTTCGAGGTCGCCGGCCTTTCATGCCTGCTGCACCTTATCCTTCGTATGGTTATGGCTCTGTGTTGAATGTAGCCATTGTTGAGAGCTTCGAAAGATATCACCATATCGCTCCACTACGAATCTTGTTGCTTCTTAATTTTGGGTTCAATTTGGAATTCGATTGCACGATATTAGACTTCGGCTGGTCAGATACAATGGCTTCTAATCATGGATTAAACGAAGAAGCAGCTGATAACCCGTCATCGCCTACGAATGTTTACAAAGATCCTGATGACGGACGGCAGCGGTTCTTGCTCGAATTGGAATTTGTTCAATGTCTTGCCAATCCAACCTACATTCATTATCTGGCTCAGAATCGTTACCTCGAGGATGAAGCTTTTATTGGTTACTTGAAGTACCTTCAATATTGGCAACGGCCAGAGTATATTAAGTTTATAATGTACCCTCATTGTCTTTTTTTCCTTGAACTTCTACAAAATTCAAACTTCCGAAATGCAATGGCTCATCCTGGCAACAAGGAATTGGCACACAGGCAACAATTTTACTTCTGGAAGAACTATAGGAACAATCGTTTGAAACACATTTTACCGCGACCTCTTCCCGAACCTGCAGCATTACCACCCCCAGTTTCTGCTCCACCTCAAGCACCTGTGCCGGCCCCAGCCCCCGCTATGGCAGCTTCACCTGCTGGTACACCTGCCCTTTCTCCGATGCAGTATGGTATTCCTCCTGGTTCTGGACTTCCAAAGAACGACATGAAGAGTGCAGGAATTGATCGACGAAAGAGAAAACACGAAAGAAGTATGACGTAG

Protein sequence

MHSPSSSLFTSRGILSHHFLLIPRPDRDSPPALSPWGKRTYTKYTYQPAIEGPPETETETEMERNFNYDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFGFRGRRPFMPAAPYPSYGYGSVLNVAIVESFERYHHIAPLRILLLLNFGFNLEFDCTILDFGWSDTMASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPAPAMAASPAGTPALSPMQYGIPPGSGLPKNDMKSAGIDRRKRKHERSMT

Homology

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BLAST of HG10001891 vs. NCBI nr
Match: TKR68723.1 (polyadenylate-binding protein 1-like [Populus alba])

HSP 1 Score: 591.7 bits (1524), Expect = 6.4e-165
Identity = 320/458 (69.87%), Postives = 348/458 (75.98%), Query Frame = 0


Query: 70  EHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIEEEAG 129
           EHEHEVYGG+IPD+ EMDAD+DMSS RA+E+ Y     + NSKDLEDMK+RLKEIEEEAG
Sbjct: 13  EHEHEVYGGEIPDEGEMDADVDMSS-RAEEDEY----QDPNSKDLEDMKKRLKEIEEEAG 72

Query: 130 ALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCG 189
           ALREMQAKVEKEMGAVQ DS   SATQAEKEEVDSRS+YVGNVDY+CTPEEVQQHFQSCG
Sbjct: 73  ALREMQAKVEKEMGAVQ-DSPGASATQAEKEEVDSRSIYVGNVDYSCTPEEVQQHFQSCG 132

Query: 190 TVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQY 249
           TVNRVTILTDKFG PKGFAYVEFVEVDA+QNALLLNESELHGRQLKVSAKRTNVPGMKQ+
Sbjct: 133 TVNRVTILTDKFGQPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNVPGMKQF 192

Query: 250 RGRRPNPFGFRGRRPFMPAAPYPSYGYGSVLNVAIVESFERYHHIAPLRILLLLNFGFNL 309
           RGRRP+P+GFR RRPFM A  YP+YGYG V                              
Sbjct: 193 RGRRPSPYGFRSRRPFMAAPFYPAYGYGRV------------------------------ 252

Query: 310 EFDCTILDFGWSDTMASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPT 369
                                          P  +YKDPDDGRQRFL+ELEFVQCLANPT
Sbjct: 253 -----------------------------PRPKKIYKDPDDGRQRFLMELEFVQCLANPT 312

Query: 370 YIHYLAQNRYLEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPG 429
           YIHYLAQNRY EDEAFIGYLKYLQYWQRPEY+KFIMYPHCL+FLELLQN+NFRNAMAHPG
Sbjct: 313 YIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYVKFIMYPHCLYFLELLQNANFRNAMAHPG 372

Query: 430 NKELAHRQQFYFWKNYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPAPA---MAAS 489
           NKELAHRQQF+FWKNYRNNRLKHILPRPLPEP   PP  + PP  P P  + A   M+A+
Sbjct: 373 NKELAHRQQFFFWKNYRNNRLKHILPRPLPEPVTAPPAPAQPPVQPAPPVSAATLGMSAA 403

Query: 490 PAGTPALSPMQYGIPPGSGLPKNDMKSAGIDRRKRKHE 525
           P   P  SPM YG+PPGS   K D++S+G DRRKRK E
Sbjct: 433 PGAVP--SPMPYGMPPGSAFGKIDIRSSGSDRRKRKKE 403

[Close]

BLAST of HG10001891 vs. NCBI nr
Match: XP_025014092.1 (polyadenylate-binding protein 2 isoform X1 [Ricinus communis])

HSP 1 Score: 588.6 bits (1516), Expect = 5.5e-164
Identity = 325/464 (70.04%), Postives = 347/464 (74.78%), Query Frame = 0


Query: 68  YDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAE----PSNANSKDLEDMKRRLKE 127
           ++E EHEVYG +IPD+ EMDAD+DMSS R +EE  + E      N NSKDLEDMK+RLKE
Sbjct: 6   HEEQEHEVYGSEIPDEGEMDADIDMSS-RPEEEEEEVEEEYDEQNPNSKDLEDMKKRLKE 65

Query: 128 IEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQ 187
           IEEEAGALREMQAKVEKEMGAVQ DSSS SATQAEKEEVDSRSVYVGNVDYACTPEEVQQ
Sbjct: 66  IEEEAGALREMQAKVEKEMGAVQ-DSSSGSATQAEKEEVDSRSVYVGNVDYACTPEEVQQ 125

Query: 188 HFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNV 247
           HFQSCGTVNRVTILTDKFG PKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTN+
Sbjct: 126 HFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNI 185

Query: 248 PGMKQYRGRRPNPF-GFRGRRPFMPAAPYPSYGYGSVLNVAIVESFERYHHIAPLRILLL 307
           PGMKQYRGRRPNP+ GFR RRPFMPA   P YGYG                         
Sbjct: 186 PGMKQYRGRRPNPYSGFRSRRPFMPAPFSPPYGYG------------------------- 245

Query: 308 LNFGFNLEFDCTILDFGWSDTMASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFV 367
                                                 P ++YKDPDDG+QRFLLELEFV
Sbjct: 246 --------------------------------------PKSIYKDPDDGKQRFLLELEFV 305

Query: 368 QCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFR 427
           QCLANPTYIHYLAQNRY EDEAFIGYLKYLQYWQ+PEYIKFIMYPHCLFFLELLQN++FR
Sbjct: 306 QCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQQPEYIKFIMYPHCLFFLELLQNASFR 365

Query: 428 NAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEPAALPP--PVSAPPQAPVPAPA 487
           NAMAHPGNKEL HRQQF+FWKNYRNNRLKHILPRPLPEP   PP   +  PP    P P 
Sbjct: 366 NAMAHPGNKELTHRQQFFFWKNYRNNRLKHILPRPLPEPVPTPPTSALPLPPLQSSPVPP 404

Query: 488 PAMAASPAGTPALSPMQYGIPPGSGLPKNDMKSAGIDRRKRKHE 525
             +A   A   ALSPM YG+PPGS L KNDM++ GIDRRKRK E
Sbjct: 426 TTVAMPAASASALSPMPYGMPPGSTLAKNDMRNTGIDRRKRKKE 404

[Close]

BLAST of HG10001891 vs. NCBI nr
Match: XP_025014094.1 (polyadenylate-binding protein 2 isoform X2 [Ricinus communis])

HSP 1 Score: 583.2 bits (1502), Expect = 2.3e-162
Identity = 323/464 (69.61%), Postives = 345/464 (74.35%), Query Frame = 0


Query: 68  YDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAE----PSNANSKDLEDMKRRLKE 127
           ++E EHEVYG +IPD+ EMDAD+DMSS R +EE  + E      N NSKDLEDMK+RLKE
Sbjct: 6   HEEQEHEVYGSEIPDEGEMDADIDMSS-RPEEEEEEVEEEYDEQNPNSKDLEDMKKRLKE 65

Query: 128 IEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQ 187
           IEEEAGALREMQAKVEKEMGAVQ DSSS SATQAEKEEVDSRSVYVGNVDYACTPEEVQQ
Sbjct: 66  IEEEAGALREMQAKVEKEMGAVQ-DSSSGSATQAEKEEVDSRSVYVGNVDYACTPEEVQQ 125

Query: 188 HFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNV 247
           HFQSCGTVNRVTILTDKFG PKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTN+
Sbjct: 126 HFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNI 185

Query: 248 PGMKQYRGRRPNPF-GFRGRRPFMPAAPYPSYGYGSVLNVAIVESFERYHHIAPLRILLL 307
           PGMKQYRGRRPNP+ GFR RRPFMPA   P YG                           
Sbjct: 186 PGMKQYRGRRPNPYSGFRSRRPFMPAPFSPPYG--------------------------- 245

Query: 308 LNFGFNLEFDCTILDFGWSDTMASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFV 367
                                                 P ++YKDPDDG+QRFLLELEFV
Sbjct: 246 --------------------------------------PKSIYKDPDDGKQRFLLELEFV 305

Query: 368 QCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFR 427
           QCLANPTYIHYLAQNRY EDEAFIGYLKYLQYWQ+PEYIKFIMYPHCLFFLELLQN++FR
Sbjct: 306 QCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQQPEYIKFIMYPHCLFFLELLQNASFR 365

Query: 428 NAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEPAALPP--PVSAPPQAPVPAPA 487
           NAMAHPGNKEL HRQQF+FWKNYRNNRLKHILPRPLPEP   PP   +  PP    P P 
Sbjct: 366 NAMAHPGNKELTHRQQFFFWKNYRNNRLKHILPRPLPEPVPTPPTSALPLPPLQSSPVPP 402

Query: 488 PAMAASPAGTPALSPMQYGIPPGSGLPKNDMKSAGIDRRKRKHE 525
             +A   A   ALSPM YG+PPGS L KNDM++ GIDRRKRK E
Sbjct: 426 TTVAMPAASASALSPMPYGMPPGSTLAKNDMRNTGIDRRKRKKE 402

[Close]

BLAST of HG10001891 vs. NCBI nr
Match: RXH94803.1 (hypothetical protein DVH24_024487 [Malus domestica])

HSP 1 Score: 581.3 bits (1497), Expect = 8.7e-162
Identity = 332/483 (68.74%), Postives = 369/483 (76.40%), Query Frame = 0


Query: 69  DEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIEEEA 128
           ++HEHEVYG +IP+D   D D+   +  AD+E Y+ +P   NSK+LEDMK+RLKEIEEEA
Sbjct: 3   EQHEHEVYGAEIPNDDGEDVDMSSRADGADDEDYNDDP---NSKELEDMKKRLKEIEEEA 62

Query: 129 GALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSC 188
           GALR+MQAKVEKEMGAVQ D+SS SA+QAEKEEVDSRS+YVGNVDYACTPEEVQQHFQSC
Sbjct: 63  GALRDMQAKVEKEMGAVQ-DTSSGSASQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSC 122

Query: 189 GTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQ 248
           GTVNRVTILTDKFG PKGFAYVEFVEV+AVQNALLLNESELHGRQLKVSAKRTNVPG+KQ
Sbjct: 123 GTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNALLLNESELHGRQLKVSAKRTNVPGLKQ 182

Query: 249 YRGRRPNPFGFRGRRPFMPAAP-YPSYGYGSVLNVAIVESFERYHHIAPLR--ILLLLNF 308
           YRGRRPNPF FR RRPF+PAAP YPS+GYG V          R+     LR  I LLL  
Sbjct: 183 YRGRRPNPF-FRSRRPFIPAAPFYPSFGYGRV---------PRFRRPMSLRSEIFLLLPL 242

Query: 309 GFNLEFD-------CTILDFGWSDTMASNH--------GLNEEAADNP------SSPTNV 368
              +E +           D   +D   ++H        G  +    +P         +++
Sbjct: 243 PLEIEDEELLGLTQWEFFDVSDADPKENHHHCSDFEQTGKGKLVVADPIPAHCHRRTSSI 302

Query: 369 YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQRPEYIKFI 428
           YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLKYLQYWQRPEY +FI
Sbjct: 303 YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYTRFI 362

Query: 429 MYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEPA-A 488
           MYPHCLFFLE LQN+NFR AMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEP  A
Sbjct: 363 MYPHCLFFLEQLQNANFRAAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEPVPA 422

Query: 489 LPPPVSAPPQAPVP--APAPAMAASPAGT-PALSPMQYGIPPGSGLPKNDMKSAGIDRRK 524
           LPPP  APPQ  VP   P PA   S   T PA SPMQY +PPGS  PK + ++ G+DRRK
Sbjct: 423 LPPP--APPQQVVPPVPPVPATTVSVTATAPAPSPMQYSMPPGSA-PKVEPRNTGVDRRK 468

[Close]

BLAST of HG10001891 vs. NCBI nr
Match: KAF9668146.1 (hypothetical protein SADUNF_Sadunf15G0098100 [Salix dunnii])

HSP 1 Score: 500.0 bits (1286), Expect = 2.6e-137
Identity = 284/439 (64.69%), Postives = 323/439 (73.58%), Query Frame = 0


Query: 86  MDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAV 145
           MDAD+DMSS RA+E+ Y  EP++         KRRLKEIEEEAGALREMQAKVEKEMGA+
Sbjct: 1   MDADVDMSS-RAEEDEYQ-EPNS---------KRRLKEIEEEAGALREMQAKVEKEMGAI 60

Query: 146 QEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPK 205
            +           K        ++  VDY+CTPEEVQQHFQSCGTVNRVTILTDKFG PK
Sbjct: 61  LQVLQRLKL----KRRRWMHDPFM-LVDYSCTPEEVQQHFQSCGTVNRVTILTDKFGQPK 120

Query: 206 GFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFGFRGRRPF 265
           GFAYVEF+EVDAVQNAL+LNESELHGRQLKVSAKRTNVPGMKQ+RGRR +P+GFR +R F
Sbjct: 121 GFAYVEFIEVDAVQNALILNESELHGRQLKVSAKRTNVPGMKQFRGRRASPYGFRSQRAF 180

Query: 266 MPAAPYPSYGYGSVLNVAIVESFERYHHIAPLRILLLLNFGFNLEFDCTILDFGWSDTMA 325
           MPA  Y  YGYGS +        E Y       +  +L   +++           + T  
Sbjct: 181 MPAPFYSPYGYGSKVQ-------ETY------AVQAILGNTYSV-----------AKTSM 240

Query: 326 SNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAF 385
           ++    E   + PSSP  +YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAF
Sbjct: 241 ASFEEAENNPETPSSPKKIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAF 300

Query: 386 IGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWKNY 445
           IGYLKYL YWQRPEY+KFIMYPHCL+FLELLQN+NFRNAMAHP NKELAHRQQF+FWKNY
Sbjct: 301 IGYLKYLLYWQRPEYMKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNY 360

Query: 446 RNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPAPAMAASPAGTPALSPMQYGIPPGSG 505
           RNNRLKHILPRPLPEPAA PP  +  P  PVPA    M A+    P  SPM YG+PPGS 
Sbjct: 361 RNNRLKHILPRPLPEPAAAPP--APAPVPPVPAATLGMLATSGAVP--SPMPYGMPPGSA 395

Query: 506 LPKNDMKSAGIDRRKRKHE 525
             K+D++S+G +RRKRK E
Sbjct: 421 FGKSDIRSSGSERRKRKKE 395

[Close]

BLAST of HG10001891 vs. ExPASy Swiss-Prot
Match: Q8VYB1 (Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana OX=3702 GN=MED31 PE=1 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.5e-73
Identity = 148/202 (73.27%), Postives = 163/202 (80.69%), Query Frame = 0


Query: 324 MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 383
           MAS   + ++A++ PS P N YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRY EDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 384 AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 443
           AFIGYLKYLQYWQRPEYIKFIMYPHCL+FLELLQN NFR AMAHP NKELAHRQQFY+WK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWK 120

Query: 444 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPAPAMAASPAGTPALSPMQYGIPPG 503
           NYRNNRLKHILPRPLPEP  +PP    PP AP  +  PA +A+ A +PALSPMQY     
Sbjct: 121 NYRNNRLKHILPRPLPEP--VPP---QPPVAPSTSLPPAPSATAALSPALSPMQY----N 180

Query: 504 SGLPKND---MKSAGIDRRKRK 523
           + L KND   M + GIDRRKRK
Sbjct: 181 NMLSKNDTRNMGATGIDRRKRK 193

[Close]

BLAST of HG10001891 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.3e-72
Identity = 155/219 (70.78%), Postives = 175/219 (79.91%), Query Frame = 0


Query: 68  YDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDA-----EPSNANSKDLEDMKRRLK 127
           +DE EHEVYGG+IP++ E + D +       EEG  A     EP  ++S+DLEDMK+R+K
Sbjct: 4   HDEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEP-GSSSRDLEDMKKRIK 63

Query: 128 EIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQ 187
           EIEEEAGALREMQAK EK+MGA Q+ S   SA  AEKEEVDSRS+YVGNVDYACTPEEVQ
Sbjct: 64  EIEEEAGALREMQAKAEKDMGASQDPSGGVSA--AEKEEVDSRSIYVGNVDYACTPEEVQ 123

Query: 188 QHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTN 247
           QHFQSCGTVNRVTILTDKFG PKGFAYVEFVEV+AVQN+L+LNESELHGRQ+KVSAKRTN
Sbjct: 124 QHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTN 183

Query: 248 VPGMKQYRGR-RPNPFGFRGRRPFMPAAP-YPSYGYGSV 280
           VPGM+Q+RGR RP    FR  R FMP  P YP Y YG V
Sbjct: 184 VPGMRQFRGRGRP----FRPMRGFMPGVPFYPPYAYGRV 215

[Close]

BLAST of HG10001891 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.8e-69
Identity = 145/210 (69.05%), Postives = 169/210 (80.48%), Query Frame = 0


Query: 69  DEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIEEEA 128
           +E EHEVYGG+IPD  EMD D++  +   D    D +      K+L++MK+RLKE+E+EA
Sbjct: 2   EEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDA----VKELDEMKKRLKEMEDEA 61

Query: 129 GALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSC 188
            ALREMQAKVEKEMGA  +D +S +A QA KEEVD+RSV+VGNVDYACTPEEVQQHFQ+C
Sbjct: 62  AALREMQAKVEKEMGA--QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTC 121

Query: 189 GTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQ 248
           GTV+RVTILTDKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKV  KRTNVPG+KQ
Sbjct: 122 GTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQ 181

Query: 249 YRGRRPNPF-GFRGRRPFMPAAPYPSYGYG 278
           +RGRR NP+ G+R RRPFM    Y  YGYG
Sbjct: 182 FRGRRFNPYMGYRFRRPFMSPYMYSPYGYG 205

[Close]

BLAST of HG10001891 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.4e-66
Identity = 147/213 (69.01%), Postives = 164/213 (77.00%), Query Frame = 0


Query: 69  DEHEHEVYGGDIPDDAEMDA---DLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIE 128
           +E EHEVYGG+IP+  + D    D+DMS+  ADE+            +L +MKRRLKE+E
Sbjct: 2   EEEEHEVYGGEIPEVGDTDVPDPDIDMSA--ADEDAV---------TELAEMKRRLKEME 61

Query: 129 EEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHF 188
           EEA ALREMQAKVEKEMGA Q D +S +A Q  KEEVD+RSVYVGNVDYACTPEEVQ HF
Sbjct: 62  EEAAALREMQAKVEKEMGATQ-DPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHF 121

Query: 189 QSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPG 248
           Q+CGTVNRVTIL DKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKVS KRTNVPG
Sbjct: 122 QTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPG 181

Query: 249 MKQYRGRRPNP-FGFRGRRPFMPAAPYPSYGYG 278
           MKQY   R NP  G+R RRPF+P   Y  YGYG
Sbjct: 182 MKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYG 202

[Close]

BLAST of HG10001891 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.3e-35
Identity = 88/161 (54.66%), Postives = 108/161 (67.08%), Query Frame = 0


Query: 103 DAEPSNANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEV 162
           D +  +   K+L +MK R+ E+E EA  LR MQ +++ E          T A + +KE +
Sbjct: 3   DQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNE----------TEALRNDKESI 62

Query: 163 DSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEVDAVQNA 222
           D++SVYVGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF GHPKGFAY+EF E   V NA
Sbjct: 63  DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 122

Query: 223 LLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFGFRGR 263
           LLLN S LH R LKV+ KRTNVPGM + RGR       RGR
Sbjct: 123 LLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGR 153

[Close]

BLAST of HG10001891 vs. ExPASy TrEMBL
Match: A0A4U5MIM5 (Polyadenylate-binding protein 1-like OS=Populus alba OX=43335 GN=D5086_0000306630 PE=3 SV=1)

HSP 1 Score: 591.7 bits (1524), Expect = 3.1e-165
Identity = 320/458 (69.87%), Postives = 348/458 (75.98%), Query Frame = 0


Query: 70  EHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIEEEAG 129
           EHEHEVYGG+IPD+ EMDAD+DMSS RA+E+ Y     + NSKDLEDMK+RLKEIEEEAG
Sbjct: 13  EHEHEVYGGEIPDEGEMDADVDMSS-RAEEDEY----QDPNSKDLEDMKKRLKEIEEEAG 72

Query: 130 ALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCG 189
           ALREMQAKVEKEMGAVQ DS   SATQAEKEEVDSRS+YVGNVDY+CTPEEVQQHFQSCG
Sbjct: 73  ALREMQAKVEKEMGAVQ-DSPGASATQAEKEEVDSRSIYVGNVDYSCTPEEVQQHFQSCG 132

Query: 190 TVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQY 249
           TVNRVTILTDKFG PKGFAYVEFVEVDA+QNALLLNESELHGRQLKVSAKRTNVPGMKQ+
Sbjct: 133 TVNRVTILTDKFGQPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNVPGMKQF 192

Query: 250 RGRRPNPFGFRGRRPFMPAAPYPSYGYGSVLNVAIVESFERYHHIAPLRILLLLNFGFNL 309
           RGRRP+P+GFR RRPFM A  YP+YGYG V                              
Sbjct: 193 RGRRPSPYGFRSRRPFMAAPFYPAYGYGRV------------------------------ 252

Query: 310 EFDCTILDFGWSDTMASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPT 369
                                          P  +YKDPDDGRQRFL+ELEFVQCLANPT
Sbjct: 253 -----------------------------PRPKKIYKDPDDGRQRFLMELEFVQCLANPT 312

Query: 370 YIHYLAQNRYLEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPG 429
           YIHYLAQNRY EDEAFIGYLKYLQYWQRPEY+KFIMYPHCL+FLELLQN+NFRNAMAHPG
Sbjct: 313 YIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYVKFIMYPHCLYFLELLQNANFRNAMAHPG 372

Query: 430 NKELAHRQQFYFWKNYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPAPA---MAAS 489
           NKELAHRQQF+FWKNYRNNRLKHILPRPLPEP   PP  + PP  P P  + A   M+A+
Sbjct: 373 NKELAHRQQFFFWKNYRNNRLKHILPRPLPEPVTAPPAPAQPPVQPAPPVSAATLGMSAA 403

Query: 490 PAGTPALSPMQYGIPPGSGLPKNDMKSAGIDRRKRKHE 525
           P   P  SPM YG+PPGS   K D++S+G DRRKRK E
Sbjct: 433 PGAVP--SPMPYGMPPGSAFGKIDIRSSGSDRRKRKKE 403

[Close]

BLAST of HG10001891 vs. ExPASy TrEMBL
Match: A0A498JLW5 (RRM domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_024487 PE=3 SV=1)

HSP 1 Score: 581.3 bits (1497), Expect = 4.2e-162
Identity = 332/483 (68.74%), Postives = 369/483 (76.40%), Query Frame = 0


Query: 69  DEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIEEEA 128
           ++HEHEVYG +IP+D   D D+   +  AD+E Y+ +P   NSK+LEDMK+RLKEIEEEA
Sbjct: 3   EQHEHEVYGAEIPNDDGEDVDMSSRADGADDEDYNDDP---NSKELEDMKKRLKEIEEEA 62

Query: 129 GALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSC 188
           GALR+MQAKVEKEMGAVQ D+SS SA+QAEKEEVDSRS+YVGNVDYACTPEEVQQHFQSC
Sbjct: 63  GALRDMQAKVEKEMGAVQ-DTSSGSASQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSC 122

Query: 189 GTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQ 248
           GTVNRVTILTDKFG PKGFAYVEFVEV+AVQNALLLNESELHGRQLKVSAKRTNVPG+KQ
Sbjct: 123 GTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNALLLNESELHGRQLKVSAKRTNVPGLKQ 182

Query: 249 YRGRRPNPFGFRGRRPFMPAAP-YPSYGYGSVLNVAIVESFERYHHIAPLR--ILLLLNF 308
           YRGRRPNPF FR RRPF+PAAP YPS+GYG V          R+     LR  I LLL  
Sbjct: 183 YRGRRPNPF-FRSRRPFIPAAPFYPSFGYGRV---------PRFRRPMSLRSEIFLLLPL 242

Query: 309 GFNLEFD-------CTILDFGWSDTMASNH--------GLNEEAADNP------SSPTNV 368
              +E +           D   +D   ++H        G  +    +P         +++
Sbjct: 243 PLEIEDEELLGLTQWEFFDVSDADPKENHHHCSDFEQTGKGKLVVADPIPAHCHRRTSSI 302

Query: 369 YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQRPEYIKFI 428
           YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLKYLQYWQRPEY +FI
Sbjct: 303 YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYTRFI 362

Query: 429 MYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEPA-A 488
           MYPHCLFFLE LQN+NFR AMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEP  A
Sbjct: 363 MYPHCLFFLEQLQNANFRAAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEPVPA 422

Query: 489 LPPPVSAPPQAPVP--APAPAMAASPAGT-PALSPMQYGIPPGSGLPKNDMKSAGIDRRK 524
           LPPP  APPQ  VP   P PA   S   T PA SPMQY +PPGS  PK + ++ G+DRRK
Sbjct: 423 LPPP--APPQQVVPPVPPVPATTVSVTATAPAPSPMQYSMPPGSA-PKVEPRNTGVDRRK 468

[Close]

BLAST of HG10001891 vs. ExPASy TrEMBL
Match: A0A803P1V0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 535.8 bits (1379), Expect = 2.0e-148
Identity = 299/422 (70.85%), Postives = 317/422 (75.12%), Query Frame = 0


Query: 105 EPSNANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDS 164
           E      ++LEDMK+RLKE+EEEAGALREMQAKVEKEMGAVQ DSSSTSATQAEKEEVDS
Sbjct: 3   EHDEQEHEELEDMKKRLKEMEEEAGALREMQAKVEKEMGAVQ-DSSSTSATQAEKEEVDS 62

Query: 165 RSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLL 224
           RS+YVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVEV+AVQNALLL
Sbjct: 63  RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNALLL 122

Query: 225 NESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFGFRGRRPFMPAAP-YPSYGYGSVLNVA 284
           NESELHGRQLKVSAKRTNVPGMKQ+RGRR  P  FR RRPF PA+P YPSYGYG      
Sbjct: 123 NESELHGRQLKVSAKRTNVPGMKQFRGRRAGP--FRSRRPFAPASPFYPSYGYGR----- 182

Query: 285 IVESFERYHHIAPLRILLLLNFGFNLEFDCTILDFGWSDTMASNHGLNEEAADNPSSPTN 344
            V  F R                                               P    +
Sbjct: 183 -VPRFRR-----------------------------------------------PMRQKS 242

Query: 345 VYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQRPEYIKF 404
           +YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLKYLQYWQ+PEY+KF
Sbjct: 243 IYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQQPEYMKF 302

Query: 405 IMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEPAA 464
           IMYPHCL+FLELLQN+NFRNAMAHPG+KELAHRQQFYFWKNYRNNRLKHILPR LPEP  
Sbjct: 303 IMYPHCLYFLELLQNANFRNAMAHPGSKELAHRQQFYFWKNYRNNRLKHILPRSLPEP-- 362

Query: 465 LPPPVSAPPQ---APVPAPAPAMAASPAGTPALSPMQYGIPPGSGLPKNDMKSAGIDRRK 523
            P P   PPQ    PV A    MAA+P   P LSPMQY  P GS LPK DM++ G DRRK
Sbjct: 363 -PAPTPVPPQQSMPPVAASTIGMAAAPG--PVLSPMQYANPQGSSLPKTDMRNTGADRRK 363

[Close]

BLAST of HG10001891 vs. ExPASy TrEMBL
Match: A0A6N2MJL7 (RRM domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS379645 PE=3 SV=1)

HSP 1 Score: 520.8 bits (1340), Expect = 6.8e-144
Identity = 297/459 (64.71%), Postives = 335/459 (72.98%), Query Frame = 0


Query: 70  EHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIEEEAG 129
           EHEHEVYGG+IPD+ EMDAD+DMSS RA+E+ Y     + NSKDLEDMK+RLKEIEEEA 
Sbjct: 13  EHEHEVYGGEIPDEGEMDADIDMSS-RAEEDEY----QDPNSKDLEDMKKRLKEIEEEAS 72

Query: 130 ALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGN--VDYACTPEEVQQHFQS 189
           ALREMQAKVEKEMGAVQ DS   SATQAEKEEVDSRS+YVGN  VDY+CTPEEVQQHFQS
Sbjct: 73  ALREMQAKVEKEMGAVQ-DSPGASATQAEKEEVDSRSIYVGNVRVDYSCTPEEVQQHFQS 132

Query: 190 CGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMK 249
           CGTVNRVTILTDKFG PKGFAYVEFVE DA+QNALLLNESELHGRQLKVSAKRTNVPGMK
Sbjct: 133 CGTVNRVTILTDKFGQPKGFAYVEFVEADAIQNALLLNESELHGRQLKVSAKRTNVPGMK 192

Query: 250 QYRGRRPNPFGFRGRRPFMPAAPYPSYGYGSVLN-VAIVESFERYHHIAPLRILLLLNFG 309
            +RGRRP+ +GFR RRPFM   PYP+YGYG  LN ++  E F+                 
Sbjct: 193 LFRGRRPSAYGFRSRRPFM---PYPAYGYGFNLNIISCAEGFQ----------------- 252

Query: 310 FNLEFDCTILDFGWSDTMASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLA 369
                       G  D   + H  +E+  +  +  T+       G+    L+L       
Sbjct: 253 ------------GSGDLCDTGH-TSEQKRNTRNCSTS-------GKLELSLQLR------ 312

Query: 370 NPTYIHYLAQNRYLEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMA 429
                 YLAQNRY +DEAFIGYLKYLQYWQRPEY+KFIMYPHCL+FLELLQN NFRNAMA
Sbjct: 313 -----KYLAQNRYFDDEAFIGYLKYLQYWQRPEYVKFIMYPHCLYFLELLQNVNFRNAMA 372

Query: 430 HPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPAPAMAAS 489
           HPGNKELAHRQQF+FWKNYRNNRLKHILPRPLPEP   PP  + PPQ P    + A    
Sbjct: 373 HPGNKELAHRQQFFFWKNYRNNRLKHILPRPLPEPVTAPPAPAPPPQPPAQPVSAATLGM 414

Query: 490 PAGTPAL-SPMQYGIPPGSGLPKNDMKSAGIDRRKRKHE 525
           PA + A+ SPM YG+PPGS   K+D++S+G DRRKRK E
Sbjct: 433 PAASGAVPSPMPYGMPPGSAFGKSDIRSSGSDRRKRKKE 414

[Close]

BLAST of HG10001891 vs. ExPASy TrEMBL
Match: A0A6A6MFI3 (Mediator of RNA polymerase II transcription subunit 31 OS=Hevea brasiliensis OX=3981 GN=GH714_025717 PE=3 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 8.3e-118
Identity = 237/339 (69.91%), Postives = 252/339 (74.34%), Query Frame = 0


Query: 68  YDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIEEE 127
           ++E EH+VYG +IPD+ E+DAD+DMSS R +E+    E    NSKDLEDMK+RLKEIEEE
Sbjct: 4   HEEQEHDVYGSEIPDEGEIDADIDMSS-RPEED----EDHGPNSKDLEDMKKRLKEIEEE 63

Query: 128 AGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQS 187
           AGALREMQAKVEKEMGAVQ DSSS SATQAEKEEVDSRS+YVGNVDY CTPEEVQQHFQS
Sbjct: 64  AGALREMQAKVEKEMGAVQ-DSSSASATQAEKEEVDSRSIYVGNVDYTCTPEEVQQHFQS 123

Query: 188 CGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMK 247
           CGTVNRVTILTDKFG PKGFAYVEFVE DAVQNALLLNESELHGRQLKVSAKRTN+PGMK
Sbjct: 124 CGTVNRVTILTDKFGQPKGFAYVEFVETDAVQNALLLNESELHGRQLKVSAKRTNIPGMK 183

Query: 248 QYRGRRPNPFGFRGRRPFMPAAP-YPSYGYGSVLNVAIVESFERYHHIAPLRILLLLNFG 307
           QYRGRRPNP+GFR RRPFMPA P YP YGYG                             
Sbjct: 184 QYRGRRPNPYGFRSRRPFMPAPPFYPPYGYG----------------------------- 243

Query: 308 FNLEFDCTILDFGWSDTMASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLA 367
                                             P ++YKDPDDGRQRFLLELEFVQCLA
Sbjct: 244 ----------------------------------PKSIYKDPDDGRQRFLLELEFVQCLA 273

Query: 368 NPTYIHYLAQNRYLEDEAFIGYLKYLQYWQRPEYIKFIM 406
           NPTYIHYLAQNRY EDEAFIGYLKYLQYWQRPEYIKFIM
Sbjct: 304 NPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIM 273

[Close]

BLAST of HG10001891 vs. TAIR 10
Match: AT5G19910.1 (SOH1 family protein )

HSP 1 Score: 277.3 bits (708), Expect = 2.5e-74
Identity = 148/202 (73.27%), Postives = 163/202 (80.69%), Query Frame = 0


Query: 324 MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 383
           MAS   + ++A++ PS P N YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRY EDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 384 AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 443
           AFIGYLKYLQYWQRPEYIKFIMYPHCL+FLELLQN NFR AMAHP NKELAHRQQFY+WK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWK 120

Query: 444 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPAPAMAASPAGTPALSPMQYGIPPG 503
           NYRNNRLKHILPRPLPEP  +PP    PP AP  +  PA +A+ A +PALSPMQY     
Sbjct: 121 NYRNNRLKHILPRPLPEP--VPP---QPPVAPSTSLPPAPSATAALSPALSPMQY----N 180

Query: 504 SGLPKND---MKSAGIDRRKRK 523
           + L KND   M + GIDRRKRK
Sbjct: 181 NMLSKNDTRNMGATGIDRRKRK 193

[Close]

BLAST of HG10001891 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 )

HSP 1 Score: 275.4 bits (703), Expect = 9.5e-74
Identity = 155/219 (70.78%), Postives = 175/219 (79.91%), Query Frame = 0


Query: 68  YDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDA-----EPSNANSKDLEDMKRRLK 127
           +DE EHEVYGG+IP++ E + D +       EEG  A     EP  ++S+DLEDMK+R+K
Sbjct: 4   HDEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEP-GSSSRDLEDMKKRIK 63

Query: 128 EIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQ 187
           EIEEEAGALREMQAK EK+MGA Q+ S   SA  AEKEEVDSRS+YVGNVDYACTPEEVQ
Sbjct: 64  EIEEEAGALREMQAKAEKDMGASQDPSGGVSA--AEKEEVDSRSIYVGNVDYACTPEEVQ 123

Query: 188 QHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTN 247
           QHFQSCGTVNRVTILTDKFG PKGFAYVEFVEV+AVQN+L+LNESELHGRQ+KVSAKRTN
Sbjct: 124 QHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTN 183

Query: 248 VPGMKQYRGR-RPNPFGFRGRRPFMPAAP-YPSYGYGSV 280
           VPGM+Q+RGR RP    FR  R FMP  P YP Y YG V
Sbjct: 184 VPGMRQFRGRGRP----FRPMRGFMPGVPFYPPYAYGRV 215

[Close]

BLAST of HG10001891 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 265.0 bits (676), Expect = 1.3e-70
Identity = 145/210 (69.05%), Postives = 169/210 (80.48%), Query Frame = 0


Query: 69  DEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRLKEIEEEA 128
           +E EHEVYGG+IPD  EMD D++  +   D    D +      K+L++MK+RLKE+E+EA
Sbjct: 2   EEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDA----VKELDEMKKRLKEMEDEA 61

Query: 129 GALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSC 188
            ALREMQAKVEKEMGA  +D +S +A QA KEEVD+RSV+VGNVDYACTPEEVQQHFQ+C
Sbjct: 62  AALREMQAKVEKEMGA--QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTC 121

Query: 189 GTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQ 248
           GTV+RVTILTDKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKV  KRTNVPG+KQ
Sbjct: 122 GTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQ 181

Query: 249 YRGRRPNPF-GFRGRRPFMPAAPYPSYGYG 278
           +RGRR NP+ G+R RRPFM    Y  YGYG
Sbjct: 182 FRGRRFNPYMGYRFRRPFMSPYMYSPYGYG 205

[Close]

BLAST of HG10001891 vs. TAIR 10
Match: AT5G19910.2 (SOH1 family protein )

HSP 1 Score: 261.5 bits (667), Expect = 1.4e-69
Identity = 148/232 (63.79%), Postives = 163/232 (70.26%), Query Frame = 0


Query: 324 MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 383
           MAS   + ++A++ PS P N YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRY EDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 384 AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNK------------ 443
           AFIGYLKYLQYWQRPEYIKFIMYPHCL+FLELLQN NFR AMAHP NK            
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKWFKMLGYWCFWN 120

Query: 444 ------------------ELAHRQQFYFWKNYRNNRLKHILPRPLPEPAALPPPVSAPPQ 503
                             ELAHRQQFY+WKNYRNNRLKHILPRPLPEP  +PP    PP 
Sbjct: 121 VFWGLVEFRVSLVQNLAYELAHRQQFYYWKNYRNNRLKHILPRPLPEP--VPP---QPPV 180

Query: 504 APVPAPAPAMAASPAGTPALSPMQYGIPPGSGLPKND---MKSAGIDRRKRK 523
           AP  +  PA +A+ A +PALSPMQY     + L KND   M + GIDRRKRK
Sbjct: 181 APSTSLPPAPSATAALSPALSPMQY----NNMLSKNDTRNMGATGIDRRKRK 223

[Close]

BLAST of HG10001891 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 )

HSP 1 Score: 257.3 bits (656), Expect = 2.7e-68
Identity = 152/255 (59.61%), Postives = 176/255 (69.02%), Query Frame = 0


Query: 68  YDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDA-----EPSNANSKDLEDMKRRLK 127
           +DE EHEVYGG+IP++ E + D +       EEG  A     EP  ++S+DLEDMK+R+K
Sbjct: 4   HDEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEP-GSSSRDLEDMKKRIK 63

Query: 128 EIEEEAGALREMQAKVEKEMGAVQ------------------------------------ 187
           EIEEEAGALREMQAK EK+MGA Q                                    
Sbjct: 64  EIEEEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSESMNLSRNLLEFEYE 123

Query: 188 EDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKG 247
           ++  ++  + AEKEEVDSRS+YVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKG
Sbjct: 124 KEIINSGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKG 183

Query: 248 FAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGR-RPNPFGFRGRRPF 280
           FAYVEFVEV+AVQN+L+LNESELHGRQ+KVSAKRTNVPGM+Q+RGR RP    FR  R F
Sbjct: 184 FAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRP----FRPMRGF 243

The following BLAST results are available for this feature:

BLAST of HG10001891 vs. NCBI nr


Match Name	E-value	Identity	Description
TKR68723.1	6.4e-165	69.87	polyadenylate-binding protein 1-like [Populus alba]	[more]
XP_025014092.1	5.5e-164	70.04	polyadenylate-binding protein 2 isoform X1 [Ricinus communis]	[more]
XP_025014094.1	2.3e-162	69.61	polyadenylate-binding protein 2 isoform X2 [Ricinus communis]	[more]
RXH94803.1	8.7e-162	68.74	hypothetical protein DVH24_024487 [Malus domestica]	[more]
KAF9668146.1	2.6e-137	64.69	hypothetical protein SADUNF_Sadunf15G0098100 [Salix dunnii]	[more]

BLAST of HG10001891 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYB1	3.5e-73	73.27	Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana O...	[more]
Q93VI4	1.3e-72	70.78	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
Q9FJN9	1.8e-69	69.05	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
Q9LX90	1.4e-66	69.01	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
O14327	1.3e-35	54.66	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]

BLAST of HG10001891 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4U5MIM5	3.1e-165	69.87	Polyadenylate-binding protein 1-like OS=Populus alba OX=43335 GN=D5086_000030663...	[more]
A0A498JLW5	4.2e-162	68.74	RRM domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_024487 PE=3 SV...	[more]
A0A803P1V0	2.0e-148	70.85	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6N2MJL7	6.8e-144	64.71	RRM domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS379645 PE...	[more]
A0A6A6MFI3	8.3e-118	69.91	Mediator of RNA polymerase II transcription subunit 31 OS=Hevea brasiliensis OX=...	[more]

BLAST of HG10001891 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19910.1	2.5e-74	73.27	SOH1 family protein	[more]
AT5G51120.1	9.5e-74	70.78	polyadenylate-binding protein 1	[more]
AT5G65260.1	1.3e-70	69.05	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G19910.2	1.4e-69	63.79	SOH1 family protein	[more]
AT5G51120.2	2.7e-68	59.61	polyadenylate-binding protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 107..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 512..528
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 464..484
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 464..528
None	No IPR available	PANTHER	PTHR23236:SF75	POLYADENYLATE-BINDING PROTEIN 1-LIKE	coord: 68..279
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 68..279
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 166..237 e-value: 9.27338E-47 score: 155.527
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 166..237 e-value: 4.4E-22 score: 89.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 167..235 e-value: 1.3E-15 score: 56.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 165..241 score: 16.773018
IPR008831	Mediator complex, subunit Med31	PFAM	PF05669	Med31	coord: 353..445 e-value: 1.5E-34 score: 117.9
IPR038089	Mediator of RNA polymerase II, subunit Med31 superfamily	GENE3D	1.10.10.1340	Mediator of RNA polymerase II, submodule Med31 (Soh1)	coord: 340..442 e-value: 2.8E-40 score: 138.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 105..238 e-value: 1.2E-27 score: 98.6
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 154..264

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001891.1	HG10001891.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003712	transcription coregulator activity
molecular_function	GO:0003676	nucleic acid binding