HG10021237 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10021237
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr05: 6835359 .. 6835784 (+)
RNA-Seq ExpressionHG10021237
SyntenyHG10021237
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATCCTCACAAAGAAGCCTAATTTGAGTAGCACCACAAATAATTGGGTTAACTCTCTTTCCTTTTCTGGCTATTTGAACTCCAAAGACCGGGAACAACCCAATTCGGGTCCGATTAAAACTTTGGAGAAGAAGATCCAACCGGTCGACTATGGAGTCAAGTTCGGTCCGACGCATCGAGGTTCAAGTGTGGGCGATGGCAAGATTTTAGGCTTATCTGGAGCAAATAGATCATCACCATACATTATGAGAAACAACAGTATTAGAAGGGGAAGTCAAAAGATAAGAGACGACGAAAATAAATCATCATGTTCGGGATGGAGTATTTTTCGATCGTTTGTTTCGCCATGTAGGGAGTGTCGAGCTAGTAAGCCCAATGCAATTCAACCGCGTCCCATTCAAGGAGGCTTCAACTTGACCTAA

mRNA sequence

ATGGGAATCCTCACAAAGAAGCCTAATTTGAGTAGCACCACAAATAATTGGGTTAACTCTCTTTCCTTTTCTGGCTATTTGAACTCCAAAGACCGGGAACAACCCAATTCGGGTCCGATTAAAACTTTGGAGAAGAAGATCCAACCGGTCGACTATGGAGTCAAGTTCGGTCCGACGCATCGAGGTTCAAGTGTGGGCGATGGCAAGATTTTAGGCTTATCTGGAGCAAATAGATCATCACCATACATTATGAGAAACAACAGTATTAGAAGGGGAAGTCAAAAGATAAGAGACGACGAAAATAAATCATCATGTTCGGGATGGAGTATTTTTCGATCGTTTGTTTCGCCATGTAGGGAGTGTCGAGCTAGTAAGCCCAATGCAATTCAACCGCGTCCCATTCAAGGAGGCTTCAACTTGACCTAA

Coding sequence (CDS)

ATGGGAATCCTCACAAAGAAGCCTAATTTGAGTAGCACCACAAATAATTGGGTTAACTCTCTTTCCTTTTCTGGCTATTTGAACTCCAAAGACCGGGAACAACCCAATTCGGGTCCGATTAAAACTTTGGAGAAGAAGATCCAACCGGTCGACTATGGAGTCAAGTTCGGTCCGACGCATCGAGGTTCAAGTGTGGGCGATGGCAAGATTTTAGGCTTATCTGGAGCAAATAGATCATCACCATACATTATGAGAAACAACAGTATTAGAAGGGGAAGTCAAAAGATAAGAGACGACGAAAATAAATCATCATGTTCGGGATGGAGTATTTTTCGATCGTTTGTTTCGCCATGTAGGGAGTGTCGAGCTAGTAAGCCCAATGCAATTCAACCGCGTCCCATTCAAGGAGGCTTCAACTTGACCTAA

Protein sequence

MGILTKKPNLSSTTNNWVNSLSFSGYLNSKDREQPNSGPIKTLEKKIQPVDYGVKFGPTHRGSSVGDGKILGLSGANRSSPYIMRNNSIRRGSQKIRDDENKSSCSGWSIFRSFVSPCRECRASKPNAIQPRPIQGGFNLT
Homology
BLAST of HG10021237 vs. NCBI nr
Match: KAA0057006.1 (hypothetical protein E6C27_scaffold96G001880 [Cucumis melo var. makuwa] >TYK26433.1 hypothetical protein E5676_scaffold861G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 161.8 bits (408), Expect = 4.4e-36
Identity = 88/138 (63.77%), Postives = 109/138 (78.99%), Query Frame = 0

Query: 1   MGILTKKPNLSS-TTNNWVNSLSFSGYLNSKDREQPNSGPIKTLEKKIQPVDYGVKF-GP 60
           MGI TKKP++SS TT+ WVNSLSFSGYLNSKDRE+P+ G I+T ++KI+ V++G +F GP
Sbjct: 1   MGIHTKKPHMSSTTTSTWVNSLSFSGYLNSKDREEPSLGSIETQDRKIKVVNHGFEFGGP 60

Query: 61  THRGSSVGDGKILGLSGANRSSPYIMRNNSIRRGSQKIRDDENKSSCSGWSIFRSFVSPC 120
           T RGSSV D   +G     RSSPYI+RNNSIRRGS+KIR+++ +S    W +  SFV PC
Sbjct: 61  TCRGSSVSD--YIG----ERSSPYIVRNNSIRRGSKKIREEKEESR---WRVVWSFVLPC 120

Query: 121 RECRASKPNAIQPRPIQG 137
           RECRASKPN +QPRPIQG
Sbjct: 121 RECRASKPNVVQPRPIQG 129

BLAST of HG10021237 vs. NCBI nr
Match: KGN64696.1 (hypothetical protein Csa_013090 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 5.4e-34
Identity = 79/135 (58.52%), Postives = 101/135 (74.81%), Query Frame = 0

Query: 1   MGILTKKPNLSSTTNNWVNSLSFSGYLNSKDREQPNSGPIKTLEKKIQPVDYGVKFGPTH 60
           M I  KKP++SSTT+ W+NSLSFSGYLNSKDR+ P+ G I+T ++KI+ VD+G +F PT 
Sbjct: 1   MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC 60

Query: 61  RGSSVGDGKILGLSGANRSSPYIMRNNSIRRGSQKIRDDENKSSCSGWSIFRSFVSPCRE 120
            GSSV D          RSS YI+RNNSI+RGS+KI +++++S  SGW IF  FV PCRE
Sbjct: 61  GGSSVSD-------YGERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRE 120

Query: 121 CRASKPNAIQPRPIQ 136
           CRA KP+ +QPRPIQ
Sbjct: 121 CRARKPSVVQPRPIQ 128

BLAST of HG10021237 vs. NCBI nr
Match: KAG6573282.1 (hypothetical protein SDJN03_27169, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.9 bits (237), Expect = 3.0e-16
Identity = 53/134 (39.55%), Postives = 82/134 (61.19%), Query Frame = 0

Query: 8   PNLSSTTNNWVNSLSFSGYLNSKDREQPNSGPIKTLEKKIQPVDYGVKFGPTHRGSSV-- 67
           P++SS++++   SLSFSG++ SKDR+     P K +    Q  ++G      + G S+  
Sbjct: 9   PDISSSSSSSNYSLSFSGFVTSKDRQ-----PDKIIRTPDQRFEFGSSVANHYGGQSLVL 68

Query: 68  ----GDGKILGLSGANRSSPYIMRNNSIRRGSQKIRDDENKSSCSGWSIFRSFVSPCREC 127
                +   +           ++RN+SIRRG ++IR++E +S+ SGWS+FRSFVSPCREC
Sbjct: 69  PRPRPEQAQVSCKRQLERDELMVRNHSIRRGGRRIREEEEESTWSGWSVFRSFVSPCREC 128

Query: 128 RASKPNAIQPRPIQ 136
           RASKP  ++ RP+Q
Sbjct: 129 RASKPAVVEARPVQ 137

BLAST of HG10021237 vs. NCBI nr
Match: XP_022139818.1 (uncharacterized protein LOC111010640 [Momordica charantia])

HSP 1 Score: 94.7 bits (234), Expect = 6.6e-16
Identity = 69/152 (45.39%), Postives = 92/152 (60.53%), Query Frame = 0

Query: 1   MGILTKKP------NLSSTTNNWVNSLSFSGYLNSKDREQPNSGPIKTLEKKIQPVDYGV 60
           MGI  K P      +  S++ ++ +SLSF+ YL  KDRE PNSG +      I+  D G 
Sbjct: 8   MGIHPKNPAQPDISSSGSSSYSFSSSLSFAAYLTCKDRE-PNSGGL------IKTGDQGF 67

Query: 61  KFGP----THRGSSVGDGKILGLSGANRSSPYIMRNNSIRRGSQKIRDDENKSSCS-GW- 120
           +FGP     H G S G G+   +   +     ++RNNSIRRG ++I+D+E +SS S  W 
Sbjct: 68  EFGPICCDDHDGGS-GSGR-RRIRDDDGQRWLVVRNNSIRRGGRRIKDEEEESSSSTSWS 127

Query: 121 SIFRSFVSPCRECRASKPNAI---QPRPIQGG 138
           S+FRSFVSPCRECRASKP+A+   Q  PIQ G
Sbjct: 128 SVFRSFVSPCRECRASKPSAVIEAQAHPIQRG 150

BLAST of HG10021237 vs. ExPASy TrEMBL
Match: A0A5D3DS79 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00970 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.1e-36
Identity = 88/138 (63.77%), Postives = 109/138 (78.99%), Query Frame = 0

Query: 1   MGILTKKPNLSS-TTNNWVNSLSFSGYLNSKDREQPNSGPIKTLEKKIQPVDYGVKF-GP 60
           MGI TKKP++SS TT+ WVNSLSFSGYLNSKDRE+P+ G I+T ++KI+ V++G +F GP
Sbjct: 1   MGIHTKKPHMSSTTTSTWVNSLSFSGYLNSKDREEPSLGSIETQDRKIKVVNHGFEFGGP 60

Query: 61  THRGSSVGDGKILGLSGANRSSPYIMRNNSIRRGSQKIRDDENKSSCSGWSIFRSFVSPC 120
           T RGSSV D   +G     RSSPYI+RNNSIRRGS+KIR+++ +S    W +  SFV PC
Sbjct: 61  TCRGSSVSD--YIG----ERSSPYIVRNNSIRRGSKKIREEKEESR---WRVVWSFVLPC 120

Query: 121 RECRASKPNAIQPRPIQG 137
           RECRASKPN +QPRPIQG
Sbjct: 121 RECRASKPNVVQPRPIQG 129

BLAST of HG10021237 vs. ExPASy TrEMBL
Match: A0A0A0LXF9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G075010 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.6e-34
Identity = 79/135 (58.52%), Postives = 101/135 (74.81%), Query Frame = 0

Query: 1   MGILTKKPNLSSTTNNWVNSLSFSGYLNSKDREQPNSGPIKTLEKKIQPVDYGVKFGPTH 60
           M I  KKP++SSTT+ W+NSLSFSGYLNSKDR+ P+ G I+T ++KI+ VD+G +F PT 
Sbjct: 1   MRIHRKKPHMSSTTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFSPTC 60

Query: 61  RGSSVGDGKILGLSGANRSSPYIMRNNSIRRGSQKIRDDENKSSCSGWSIFRSFVSPCRE 120
            GSSV D          RSS YI+RNNSI+RGS+KI +++++S  SGW IF  FV PCRE
Sbjct: 61  GGSSVSD-------YGERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRE 120

Query: 121 CRASKPNAIQPRPIQ 136
           CRA KP+ +QPRPIQ
Sbjct: 121 CRARKPSVVQPRPIQ 128

BLAST of HG10021237 vs. ExPASy TrEMBL
Match: A0A6J1CGL7 (uncharacterized protein LOC111010640 OS=Momordica charantia OX=3673 GN=LOC111010640 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.2e-16
Identity = 69/152 (45.39%), Postives = 92/152 (60.53%), Query Frame = 0

Query: 1   MGILTKKP------NLSSTTNNWVNSLSFSGYLNSKDREQPNSGPIKTLEKKIQPVDYGV 60
           MGI  K P      +  S++ ++ +SLSF+ YL  KDRE PNSG +      I+  D G 
Sbjct: 8   MGIHPKNPAQPDISSSGSSSYSFSSSLSFAAYLTCKDRE-PNSGGL------IKTGDQGF 67

Query: 61  KFGP----THRGSSVGDGKILGLSGANRSSPYIMRNNSIRRGSQKIRDDENKSSCS-GW- 120
           +FGP     H G S G G+   +   +     ++RNNSIRRG ++I+D+E +SS S  W 
Sbjct: 68  EFGPICCDDHDGGS-GSGR-RRIRDDDGQRWLVVRNNSIRRGGRRIKDEEEESSSSTSWS 127

Query: 121 SIFRSFVSPCRECRASKPNAI---QPRPIQGG 138
           S+FRSFVSPCRECRASKP+A+   Q  PIQ G
Sbjct: 128 SVFRSFVSPCRECRASKPSAVIEAQAHPIQRG 150

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0057006.14.4e-3663.77hypothetical protein E6C27_scaffold96G001880 [Cucumis melo var. makuwa] >TYK2643... [more]
KGN64696.15.4e-3458.52hypothetical protein Csa_013090 [Cucumis sativus][more]
KAG6573282.13.0e-1639.55hypothetical protein SDJN03_27169, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022139818.16.6e-1645.39uncharacterized protein LOC111010640 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DS792.1e-3663.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LXF92.6e-3458.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G075010 PE=4 SV=1[more]
A0A6J1CGL73.2e-1645.39uncharacterized protein LOC111010640 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10021237.1HG10021237.1mRNA