HG10009043 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009043
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	30S ribosomal protein S6 alpha, chloroplastic
Location	Chr06: 1957269 .. 1959928 (-)
RNA-Seq Expression	HG10009043
Synteny	HG10009043

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTCACTTCCACTCTCACCGCTACTTCTTCAACCTCTCCTCTCTCCTCCAAGCCCCTTTCCCTTCCCCCATTCACGCATCAAATTTCTTTCCCCTTTACCCTCAAACCCTCCAAATCCCTCTTTTCTGCCGAAGGAATCGGCCCTGCTTTGGGTCTCGGATTGTCCGTGAAAGCCCAAACTCTTGAATTTTCAGGTTCGCTCTTCGAAGGGGGGTTCGGAGCTCAGGATGAACCGCCTGCCCCTCCAGGAACAGGATTCGCCGCTGCCCTCGAAGATAAGGAGGAGCCTCAGTGCCCTCCTGGACTTCGAAAGTACGAGACTATGGTGGTTTTGAGGCCCGACATGTCTGAAGACGAGAGACTCGCTTTCACCGAGAAATACGAAGAGGTAGTATCGTCTCTGAAATGTTGCTACTGTGCTGTTGCCTTTTCCCCCTTCTGTAATTTTTCTTTGGTTTCTGAGGAAAAGAGAGAGACCAAAGGAAAACCGAAATTTGTTTAGACTAGTTTCATATGTGAGAGAGAATTCAGTTTGTTTCTCTGTTTAAATTGGGTTTAAGATCACATACTCCTTGTGGCCTTCCTGAGAAACCACTTGCGATGTAATGAGGTGGGAGATTGTCATTGTCTGAATCAGAACACATTATTCAAGTAATGGATAGCTCATGAAAACTTAGGCTGCAGTTTATGCAAACTAGTAGCTTTTATGGGAATGCTGTTGAAAAAATTATAATATACGAGTTTTCCTGTATTCTCTGTTTGAGTGTTTGGTTCCCAAGAAGTGAGAACCTTTTGTCGTGTCAGCCTTCTAAGTCCTCTGGAGACAGTAGTTTTAAGAATTTCACATTGGAAAGATGGAGACACATGAGCCACTCTTCTTGTTGCAAATTGATTTTGAGATGTAACTCTATGCTTATCTAATATAGTATCCAAAGTCCAATCGAGTATTTGGTATAAAAAAAGGATTTGACCCAAGAATGAGTGAACCTAAAGAAGCACCATCTTAAAGGGGCATATTGAGGATTATAATTGGAAAGATGGAGAGATATATGTGTTACTTCTTTCTTTGGCAATTGGTTTTGAGATGTAACTTTATGTCATCTAATAGGTAGGTAGGGACGAGATGGATTATTTTATTTCTTTGAGGAATATTTTCTATTGAACTTTAGGGATGTTTGACCATCAATAAACGTGAGTTTAGAACCCTAAGTTAGGAAGGTTGGGTTTGTATAACCTATGTATTCTGGAAAGGAATCGGTGTTTGGAAATTTGAGTTTGTGTAACTTGTAATTGGTGGGGAGTTCAGATTTTTTCTTTCTTTTTCTTTTTCTTTTTATTTTGTTAGTCTAGATTCGTGAAATATAACTTTATGTAGTTTGTAAGATTAGCAAACTTATAGTTTGGAATAAGCAAATCAACATTTTAAACTCTTCAGTCTAATCTCATGTTACGCAAATTTAATCCACGAACCAACTTCTAGTGCTTGAAAAAATATATTGGAGTGTCAAACAAATTTGATGTGGAGGGGCACTAGCTGATTTGTTGTAAATAGGACAGTGGCAGCATTGAGACCATATTTATGAGAGAACATTCAAGAAAGGCAGGAAAGAGATGAAGCCTGTTAGGATTGACTTTCTAAGTGTTTATAAACACTTTTTTGCACTTATAAACACTTAGAAAGTCAATCAAAACGCACTTGATAGTTAACATGCATTTTTGAAGCAAAGTTGCCTGAATGGGCAATTTATTTCTTATGGGAACTGTTTGCTTGTTATATTCCCTACAAGTATGCACTCCTTATCATGAAAACATTGAGTGGAATACAAAGAACTTTTTTCTTTTGTTTTTTCGATGAGTGTATATTGTTAATTGTGAGAAATTCTCCCCTTGATATAAGTAAAATTCTGGTTGTGGAGTAAAGTTACGAACTGGGGATTTATATACTGTAAGCTGATGATCTTAGTTGATTGAATGATTTCGGTCTTGACTAAAGCATAACTTTTTCTTTCTTATTTATTAAGAGGTAATTTAGCTTTATATAAGCAAATGATTCTTTGGTGAAGGGACAATCGAGTTAGCTTTGTTTTCTTTCTTAGAACTCAAGGACACAGTTGTACAACCTATAGAACAGATCCTGTTCAAGTAACGTCGTTAGTTTTGTTTTCTTTCAACATAGTGTTGATAAGAATGGCCTATTTTGCAGTTGCTTGTTGCTGGGGGTGCCATGTATGTTGAAGTATTCCACAAAGGTCTCATTCCACTAGCATATAGCATCAAGAAGAAAAACAAAGCTGGTGAAACTAACACTTACTTGGATGGCATCAATCTCCTCTTCACCTACTTCACAAAACCCGAATCAATGGGAATTCTCGACGCAACACTTCAAGCAGATGACGATGTTGTTCGATCAATGAGTTTCAAGGTAAGGAAACGAAAATACTAAGTATGCCTTAGCGGTAAATTTCTTGGTCTTTCACATCATCTTTTGGACAATTTTATTCAAAGCAATGGAAAAGATGTGTAGTTGCAATTTGTGCTTTTCATTTTCAAAATGAGTGCTGCTATTGTGACAACTCTATGGCCATTTAGGCTTTATCCATAACCATCTGATTGCTGTTCTTTTCATTACAGCCTTCCAATGGAAGTGCTATATGA

mRNA sequence

ATGGCCTTCACTTCCACTCTCACCGCTACTTCTTCAACCTCTCCTCTCTCCTCCAAGCCCCTTTCCCTTCCCCCATTCACGCATCAAATTTCTTTCCCCTTTACCCTCAAACCCTCCAAATCCCTCTTTTCTGCCGAAGGAATCGGCCCTGCTTTGGGTCTCGGATTGTCCGTGAAAGCCCAAACTCTTGAATTTTCAGGTTCGCTCTTCGAAGGGGGGTTCGGAGCTCAGGATGAACCGCCTGCCCCTCCAGGAACAGGATTCGCCGCTGCCCTCGAAGATAAGGAGGAGCCTCAGTGCCCTCCTGGACTTCGAAAGTACGAGACTATGGTGGTTTTGAGGCCCGACATGTCTGAAGACGAGAGACTCGCTTTCACCGAGAAATACGAAGAGTTGCTTGTTGCTGGGGGTGCCATGTATGTTGAAGTATTCCACAAAGGTCTCATTCCACTAGCATATAGCATCAAGAAGAAAAACAAAGCTGGTGAAACTAACACTTACTTGGATGGCATCAATCTCCTCTTCACCTACTTCACAAAACCCGAATCAATGGGAATTCTCGACGCAACACTTCAAGCAGATGACGATGTTGTTCGATCAATGAGTTTCAAGCCTTCCAATGGAAGTGCTATATGA

Coding sequence (CDS)

ATGGCCTTCACTTCCACTCTCACCGCTACTTCTTCAACCTCTCCTCTCTCCTCCAAGCCCCTTTCCCTTCCCCCATTCACGCATCAAATTTCTTTCCCCTTTACCCTCAAACCCTCCAAATCCCTCTTTTCTGCCGAAGGAATCGGCCCTGCTTTGGGTCTCGGATTGTCCGTGAAAGCCCAAACTCTTGAATTTTCAGGTTCGCTCTTCGAAGGGGGGTTCGGAGCTCAGGATGAACCGCCTGCCCCTCCAGGAACAGGATTCGCCGCTGCCCTCGAAGATAAGGAGGAGCCTCAGTGCCCTCCTGGACTTCGAAAGTACGAGACTATGGTGGTTTTGAGGCCCGACATGTCTGAAGACGAGAGACTCGCTTTCACCGAGAAATACGAAGAGTTGCTTGTTGCTGGGGGTGCCATGTATGTTGAAGTATTCCACAAAGGTCTCATTCCACTAGCATATAGCATCAAGAAGAAAAACAAAGCTGGTGAAACTAACACTTACTTGGATGGCATCAATCTCCTCTTCACCTACTTCACAAAACCCGAATCAATGGGAATTCTCGACGCAACACTTCAAGCAGATGACGATGTTGTTCGATCAATGAGTTTCAAGCCTTCCAATGGAAGTGCTATATGA

Protein sequence

MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSEDERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRSMSFKPSNGSAI

Homology

[Close]

BLAST of HG10009043 vs. NCBI nr
Match: XP_038906485.1 (30S ribosomal protein S6 alpha, chloroplastic [Benincasa hispida])

HSP 1 Score: 384.4 bits (986), Expect = 6.2e-103
Identity = 194/204 (95.10%), Postives = 199/204 (97.55%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSKPLSLPPFTHQ+SFPFTLKP KSLFS +GIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKPLSLPPFTHQVSFPFTLKPFKSLFSPDGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGS FEGG G +DEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGTEDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMGILDATLQADDDVVRSMSFK 205
           PESMGIL+ATLQADD+VVRSMSFK
Sbjct: 181 PESMGILEATLQADDNVVRSMSFK 204

[Close]

BLAST of HG10009043 vs. NCBI nr
Match: XP_016898885.1 (PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Cucumis melo] >KAA0042673.1 30S ribosomal protein S6 alpha [Cucumis melo var. makuwa] >TYK06076.1 30S ribosomal protein S6 alpha [Cucumis melo var. makuwa])

HSP 1 Score: 365.5 bits (937), Expect = 3.0e-97
Identity = 187/204 (91.67%), Postives = 194/204 (95.10%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSK  SLPPFT+QISFPFTLK SK LFS +GIG ALG+GLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60

Query: 61  QTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGS FEGG G+QDEPPAPPGTGFA ALEDKEEPQCPPGLRKYETMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVF+KGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMGILDATLQADDDVVRSMSFK 205
           PESM +L+ATLQADDDVVRSMSFK
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFK 204

[Close]

BLAST of HG10009043 vs. NCBI nr
Match: XP_023534494.1 (30S ribosomal protein S6 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 357.8 bits (917), Expect = 6.3e-95
Identity = 180/204 (88.24%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSKPLSLP FT  ISFPFTL+ SKSLFS +GIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKPLSLPQFTPHISFPFTLRSSKSLFSPDGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGS F+GGFG +DEPPA PGTGFA  LEDKEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLA T+KYEELLVAGG MYVEVFHKG++PLAYSIKKKNKAGETNTYLDGI+LLFTYFTK
Sbjct: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180

Query: 181 PESMGILDATLQADDDVVRSMSFK 205
           PESMG+L+A LQADDDVVRSMSFK
Sbjct: 181 PESMGVLEAALQADDDVVRSMSFK 204

[Close]

BLAST of HG10009043 vs. NCBI nr
Match: XP_031741227.1 (30S ribosomal protein S6 alpha, chloroplastic [Cucumis sativus])

HSP 1 Score: 357.5 bits (916), Expect = 8.2e-95
Identity = 184/204 (90.20%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSK   L PFT+QISFPF LK SK LFS  GIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGS FEGG G+QDEPPAPPGTGFA ALE+KEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVF+KGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMGILDATLQADDDVVRSMSFK 205
           PESM +L+ATLQADDDVVRSMSFK
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFK 204

[Close]

BLAST of HG10009043 vs. NCBI nr
Match: KAE8647835.1 (hypothetical protein Csa_000386 [Cucumis sativus])

HSP 1 Score: 357.5 bits (916), Expect = 8.2e-95
Identity = 184/204 (90.20%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSK   L PFT+QISFPF LK SK LFS  GIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGS FEGG G+QDEPPAPPGTGFA ALE+KEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVF+KGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMGILDATLQADDDVVRSMSFK 205
           PESM +L+ATLQADDDVVRSMSFK
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFK 204

[Close]

BLAST of HG10009043 vs. ExPASy Swiss-Prot
Match: Q8VY91 (30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS6 PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.8e-60
Identity = 127/206 (61.65%), Postives = 152/206 (73.79%), Query Frame = 0


Query: 4   TSTLTATSSTSPL---SSKPLSLPPFTHQISFPFTLKP--SKSLFSAEGIGPALGLGLSV 63
           +S   + S+  PL   SS+PL        +SF  +L+P  SKS      I    G    V
Sbjct: 3   SSLCVSNSTICPLPNVSSQPL--------LSFSHSLRPFISKSKPMCASIQKRDGSQFVV 62

Query: 64  KAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMS 123
           K+Q L+FSG+ FEGGFG+ D+P +P G+G + ALEDK EPQCPPGLR+YETM VLRPDMS
Sbjct: 63  KSQALDFSGTFFEGGFGSDDDPTSPSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMS 122

Query: 124 EDERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYF 183
           EDERL  T+KYEELLVAGG MYVEVF++G+IPLAYSI+KKNKAGETNTYLDGI LLFTYF
Sbjct: 123 EDERLGLTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYF 182

Query: 184 TKPESMGILDATLQADDDVVRSMSFK 205
           TKPES+  L+  L ADDD++RS SFK
Sbjct: 183 TKPESIVPLETVLTADDDIIRSSSFK 200

[Close]

BLAST of HG10009043 vs. ExPASy Swiss-Prot
Match: P82403 (30S ribosomal protein S6 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS6 PE=1 SV=3)

HSP 1 Score: 224.6 bits (571), Expect = 1.1e-57
Identity = 130/210 (61.90%), Postives = 153/210 (72.86%), Query Frame = 0


Query: 2   AFTSTLTATSSTSPLSS--KPLSLPP---FTHQIS-FPFTLKPSKSLFSAEGIGPALGLG 61
           + TSTL ++S T+ L S  KP   P    FTH ++ F   LKPS+  + +         G
Sbjct: 5   SLTSTLPSSSPTTSLHSIPKPKLKPSTINFTHNLNPFNPNLKPSRHHYLS-------NYG 64

Query: 62  LSVKAQTLEFSGSLFEGGFGAQDE-PPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLR 121
             VKA  L+FSGS FEGGFG  DE PP+ P  G   A+E+K EPQCPPGLR+YETM VLR
Sbjct: 65  PYVKAIALDFSGSFFEGGFGGLDEDPPSTPPAGL--AVEEKPEPQCPPGLRQYETMAVLR 124

Query: 122 PDMSEDERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLL 181
           PDM+EDERL  T+KYEELLVAGGAMYVEVF++G+IPLAYSIK+KNKAGETN YLDGI LL
Sbjct: 125 PDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLL 184

Query: 182 FTYFTKPESMGILDATLQADDDVVRSMSFK 205
           FTYFTKPES+  L+A L  DDDV+RS SFK
Sbjct: 185 FTYFTKPESISPLEAALVTDDDVIRSSSFK 205

[Close]

BLAST of HG10009043 vs. ExPASy Swiss-Prot
Match: Q8EKV4 (30S ribosomal protein S6 OS=Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831) OX=221109 GN=rpsF PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-08
Identity = 32/101 (31.68%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 104 LRKYETMVVLRPDMSEDERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGE 163
           +RKYE M ++RPD+ E+ + A  E++  +L   GA   +V  KG   LAY         E
Sbjct: 1   MRKYEIMYIIRPDIEEEAQTALIERFNTILTDNGAEIDKVDEKGKRRLAY---------E 60

Query: 164 TNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRSMSFK 205
            N Y DG  ++  +    E++   D   + +DD++R M+ K
Sbjct: 61  INDYRDGYYVIINFRGSEEAINEFDRLAKFNDDIIRHMAIK 92

[Close]

BLAST of HG10009043 vs. ExPASy Swiss-Prot
Match: Q10XV0 (30S ribosomal protein S6 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=rpsF PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.0e-08
Identity = 31/98 (31.63%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 107 YETMVVLRPDMSEDERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNT 166
           YETM +LRPDM+E++      KY+ +L   GA  +++ H+G + LAY         E N 
Sbjct: 6   YETMYILRPDMTEEKVEQAITKYKSMLEEQGAYDIKIQHRGKLRLAY---------EINN 65

Query: 167 YLDGINLLFTYFTKPESMGILDATLQADDDVVRSMSFK 205
             +GI +   Y   P  + IL+  ++  ++V+R ++ K
Sbjct: 66  QREGIYIQMNYQGPPTQIAILERAMRLSEEVIRYLTVK 94

[Close]

BLAST of HG10009043 vs. ExPASy Swiss-Prot
Match: Q3MBE2 (30S ribosomal protein S6 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rpsF PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-07
Identity = 31/98 (31.63%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 107 YETMVVLRPDMSEDERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNT 166
           YET+ +LRPD+++++      KY+ LL   GA  +EV ++G   LAY IKK+        
Sbjct: 5   YETLYILRPDLTDEQVELAIAKYQNLLQEQGATDIEVQNRGKRRLAYEIKKQR------- 64

Query: 167 YLDGINLLFTYFTKPESMGILDATLQADDDVVRSMSFK 205
             DG  + F Y    +++ IL+  ++  ++V+R ++ K
Sbjct: 65  --DGFYVQFNYNAPGKAIAILERAMRLSEEVIRYLTVK 93

[Close]

BLAST of HG10009043 vs. ExPASy TrEMBL
Match: A0A5D3C6V7 (30S ribosomal protein S6 alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001770 PE=3 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.5e-97
Identity = 187/204 (91.67%), Postives = 194/204 (95.10%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSK  SLPPFT+QISFPFTLK SK LFS +GIG ALG+GLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60

Query: 61  QTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGS FEGG G+QDEPPAPPGTGFA ALEDKEEPQCPPGLRKYETMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVF+KGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMGILDATLQADDDVVRSMSFK 205
           PESM +L+ATLQADDDVVRSMSFK
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFK 204

[Close]

BLAST of HG10009043 vs. ExPASy TrEMBL
Match: A0A1S4DT54 (30S ribosomal protein S6 alpha, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107990347 PE=3 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.5e-97
Identity = 187/204 (91.67%), Postives = 194/204 (95.10%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSK  SLPPFT+QISFPFTLK SK LFS +GIG ALG+GLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60

Query: 61  QTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGS FEGG G+QDEPPAPPGTGFA ALEDKEEPQCPPGLRKYETMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVF+KGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMGILDATLQADDDVVRSMSFK 205
           PESM +L+ATLQADDDVVRSMSFK
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFK 204

[Close]

BLAST of HG10009043 vs. ExPASy TrEMBL
Match: A0A0A0KK24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148810 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 4.0e-95
Identity = 184/204 (90.20%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSK   L PFT+QISFPF LK SK LFS  GIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGS FEGG G+QDEPPAPPGTGFA ALE+KEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVF+KGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMGILDATLQADDDVVRSMSFK 205
           PESM +L+ATLQADDDVVRSMSFK
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFK 204

[Close]

BLAST of HG10009043 vs. ExPASy TrEMBL
Match: A0A6J1H3R6 (30S ribosomal protein S6 alpha, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111459837 PE=3 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 2.0e-94
Identity = 179/204 (87.75%), Postives = 190/204 (93.14%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKA 60
           MAFTSTLTATSSTSPLSSKPLSLP FT  ISFPFTL+ SKSLFS +GI PALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKPLSLPQFTPHISFPFTLRSSKSLFSPDGIDPALGLGLSVKA 60

Query: 61  QTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGS F+GGFG +DEPPA PGTGFA  LEDKEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLA T+KYEELLVAGG MYVEVFHKG++PLAYSIKKKNKAGETNTYLDGI+LLFTYFTK
Sbjct: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180

Query: 181 PESMGILDATLQADDDVVRSMSFK 205
           PESMG+L+A LQADDDVVRSMSFK
Sbjct: 181 PESMGVLEAALQADDDVVRSMSFK 204

[Close]

BLAST of HG10009043 vs. ExPASy TrEMBL
Match: A0A6J1K3V4 (30S ribosomal protein S6 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111491447 PE=3 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 5.7e-94
Identity = 179/204 (87.75%), Postives = 189/204 (92.65%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKA 60
           MAFTSTLTATSS SPLSSKP SLP FT  ISFPFTL+ SKSLFS +GIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSASPLSSKPHSLPQFTPHISFPFTLRSSKSLFSPDGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGS F+GGFG +DEPP  PGTGFA  LEDKEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFQGGFGTEDEPPTSPGTGFAIDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLA T+KYEELLVAGG MYVEVFHKG++PLAYSIKKKNKAGETNTYLDGI+LLFTYFTK
Sbjct: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180

Query: 181 PESMGILDATLQADDDVVRSMSFK 205
           PESMGIL+ATLQADDDVVRSMSFK
Sbjct: 181 PESMGILEATLQADDDVVRSMSFK 204

[Close]

BLAST of HG10009043 vs. TAIR 10
Match: AT1G64510.1 (Translation elongation factor EF1B/ribosomal protein S6 family protein )

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-61
Identity = 127/206 (61.65%), Postives = 152/206 (73.79%), Query Frame = 0


Query: 4   TSTLTATSSTSPL---SSKPLSLPPFTHQISFPFTLKP--SKSLFSAEGIGPALGLGLSV 63
           +S   + S+  PL   SS+PL        +SF  +L+P  SKS      I    G    V
Sbjct: 3   SSLCVSNSTICPLPNVSSQPL--------LSFSHSLRPFISKSKPMCASIQKRDGSQFVV 62

Query: 64  KAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMS 123
           K+Q L+FSG+ FEGGFG+ D+P +P G+G + ALEDK EPQCPPGLR+YETM VLRPDMS
Sbjct: 63  KSQALDFSGTFFEGGFGSDDDPTSPSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMS 122

Query: 124 EDERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYF 183
           EDERL  T+KYEELLVAGG MYVEVF++G+IPLAYSI+KKNKAGETNTYLDGI LLFTYF
Sbjct: 123 EDERLGLTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYF 182

Query: 184 TKPESMGILDATLQADDDVVRSMSFK 205
           TKPES+  L+  L ADDD++RS SFK
Sbjct: 183 TKPESIVPLETVLTADDDIIRSSSFK 200

The following BLAST results are available for this feature:

BLAST of HG10009043 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906485.1	6.2e-103	95.10	30S ribosomal protein S6 alpha, chloroplastic [Benincasa hispida]	[more]
XP_016898885.1	3.0e-97	91.67	PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Cucumis melo] >KAA0042...	[more]
XP_023534494.1	6.3e-95	88.24	30S ribosomal protein S6 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_031741227.1	8.2e-95	90.20	30S ribosomal protein S6 alpha, chloroplastic [Cucumis sativus]	[more]
KAE8647835.1	8.2e-95	90.20	hypothetical protein Csa_000386 [Cucumis sativus]	[more]

BLAST of HG10009043 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VY91	1.8e-60	61.65	30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
P82403	1.1e-57	61.90	30S ribosomal protein S6 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=RP...	[more]
Q8EKV4	2.7e-08	31.68	30S ribosomal protein S6 OS=Oceanobacillus iheyensis (strain DSM 14371 / CIP 107...	[more]
Q10XV0	6.0e-08	31.63	30S ribosomal protein S6 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 G...	[more]
Q3MBE2	1.0e-07	31.63	30S ribosomal protein S6 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937)...	[more]

BLAST of HG10009043 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C6V7	1.5e-97	91.67	30S ribosomal protein S6 alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S4DT54	1.5e-97	91.67	30S ribosomal protein S6 alpha, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1079...	[more]
A0A0A0KK24	4.0e-95	90.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148810 PE=3 SV=1	[more]
A0A6J1H3R6	2.0e-94	87.75	30S ribosomal protein S6 alpha, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1K3V4	5.7e-94	87.75	30S ribosomal protein S6 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of HG10009043 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64510.1	1.3e-61	61.65	Translation elongation factor EF1B/ribosomal protein S6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 207..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR21011:SF15	30S RIBOSOMAL PROTEIN S6 ALPHA, CHLOROPLASTIC	coord: 19..204
None	No IPR available	CDD	cd15487	bS6_chloro_cyano	coord: 104..204 e-value: 1.23719E-33 score: 114.227
IPR014717	Translation elongation factor EF1B/ribosomal protein S6	GENE3D	3.30.70.60		coord: 104..209 e-value: 3.2E-15 score: 57.8
IPR000529	Ribosomal protein S6	PFAM	PF01250	Ribosomal_S6	coord: 106..204 e-value: 2.2E-15 score: 56.7
IPR000529	Ribosomal protein S6	PANTHER	PTHR21011	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6	coord: 19..204
IPR020814	Ribosomal protein S6, plastid/chloroplast	HAMAP	MF_00360	Ribosomal_S6	coord: 104..207 score: 13.409628
IPR035980	Ribosomal protein S6 superfamily	SUPERFAMILY	54995	Ribosomal protein S6	coord: 104..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009043.1	HG10009043.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome