HG10003581.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003581.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr08: 3644067 .. 3644420 (+)
Sequence length	273
RNA-Seq Expression	HG10003581.1
Synteny	HG10003581.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGGGAAGAAGGTAAATATCAAACTAATATATATTCATTCTCTTACATTCAACAACTATTATATTATCAACATTCTTCTAATTTCATTTTAGGTTGTTCAACAAAAAGGAAAGACTAAAAAATATAGACCGAAGGTGGCTGTTGATACCTACATTGAAGATGAAAGGCCAAAGCGACAAAGAAAACCATCACAAAAAGCATTGGACAACAAAGTCTCACCAAAGAAAGTCAAGGAAAAGAAGAAAGTATCTCCAAAGAAGTCAACAACAGGGACCTCGTTGATGGATAGTGCGCCAAGCTTTGATTTAAACATTTCTCAACTTAAATCTCAATCTCAATCTCAATTTTAA

mRNA sequence

ATGAGTGGGAAGAAGGTTGTTCAACAAAAAGGAAAGACTAAAAAATATAGACCGAAGGTGGCTGTTGATACCTACATTGAAGATGAAAGGCCAAAGCGACAAAGAAAACCATCACAAAAAGCATTGGACAACAAAGTCTCACCAAAGAAAGTCAAGGAAAAGAAGAAAGTATCTCCAAAGAAGTCAACAACAGGGACCTCGTTGATGGATAGTGCGCCAAGCTTTGATTTAAACATTTCTCAACTTAAATCTCAATCTCAATCTCAATTTTAA

Coding sequence (CDS)

ATGAGTGGGAAGAAGGTTGTTCAACAAAAAGGAAAGACTAAAAAATATAGACCGAAGGTGGCTGTTGATACCTACATTGAAGATGAAAGGCCAAAGCGACAAAGAAAACCATCACAAAAAGCATTGGACAACAAAGTCTCACCAAAGAAAGTCAAGGAAAAGAAGAAAGTATCTCCAAAGAAGTCAACAACAGGGACCTCGTTGATGGATAGTGCGCCAAGCTTTGATTTAAACATTTCTCAACTTAAATCTCAATCTCAATCTCAATTTTAA

Protein sequence

MSGKKVVQQKGKTKKYRPKVAVDTYIEDERPKRQRKPSQKALDNKVSPKKVKEKKKVSPKKSTTGTSLMDSAPSFDLNISQLKSQSQSQF

Homology

[Close]

BLAST of HG10003581.1 vs. NCBI nr
Match: XP_038891747.1 (pescadillo homolog [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-04
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1   MSGKKVVQQ--KGKTKKYRPKVAVDTYIEDERPKRQRKPSQKALDNKVSPKKVKEK---- 60
           M+ K V+++  K   KKYRPKV ++   +++RPKRQ KP++K L+N    KK K+K    
Sbjct: 213 MTKKNVIEKTLKKSLKKYRPKVVIENIKDNKRPKRQAKPTKKILENAKKQKKDKKKVSPN 272

Query: 61  --KKVSPKKSTTGTSLM-DSAPSFDLNISQL 83
              KVSP K+T  +    D APSFDL ISQL
Sbjct: 273 VSTKVSPSKATRQSPRWNDDAPSFDLKISQL 303

[Close]

BLAST of HG10003581.1 vs. NCBI nr
Match: XP_038880505.1 (glutamic acid-rich protein-like [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-04
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 1   MSGKKVVQQ--KGKTKKYRPKVAVDTYIEDERPKRQRKPSQKALDNKVSPKKVKEK---- 60
           M  K V+++  K   KKYRPKV +    +++RPKRQ KP++K L+N    KK K+K    
Sbjct: 202 MRKKNVIEKTLKKSPKKYRPKVVIGNIEDNKRPKRQAKPTKKILENAKKQKKDKKKVSTN 261

Query: 61  --KKVSPKKST-TGTSLMDSAPSFDLNISQL 83
              KVSP K+T    S  D+APSFDL ISQL
Sbjct: 262 VSTKVSPSKATRQSPSWNDNAPSFDLKISQL 292

[Close]

BLAST of HG10003581.1 vs. NCBI nr
Match: XP_038885971.1 (chromatin modification-related protein EAF7-like [Benincasa hispida])

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-04
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 10  KGKTKKYRPKVAVDTYIEDERPKRQRKPSQKALDNKVSPKKVKEKKKVSPKKSTTGTSLM 69
           K   KKYRPKV ++   +++RPKRQ KP++K L+N  + K+ K+KKKVSP  ST  +S  
Sbjct: 175 KKSPKKYRPKVVIENMDDNKRPKRQTKPTKKILEN--AKKQKKDKKKVSPNVSTKVSSSK 234

Query: 70  ---------DSAPSFDLNISQL 83
                    D  PSFDL ISQL
Sbjct: 235 ATRHSPRWNDDTPSFDLKISQL 254

[Close]

BLAST of HG10003581.1 vs. NCBI nr
Match: KAA0031317.1 (uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0034561.1 uncharacterized protein E6C27_scaffold65G005770 [Cucumis melo var. makuwa] >KAA0035329.1 uncharacterized protein E6C27_scaffold228G001300 [Cucumis melo var. makuwa] >KAA0037560.1 uncharacterized protein E6C27_scaffold277G001820 [Cucumis melo var. makuwa] >KAA0038033.1 uncharacterized protein E6C27_scaffold36G002310 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 6.3e-04
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 5   KVVQQKGKTKKYRPKVAVDTYIEDERPKRQRKPSQKALDNKVSPKKVKEKKKVSPKKSTT 64
           KVVQ+K K K     + + T IE  RPKRQ KPS+K L+N    K V+ KK  SPK +  
Sbjct: 265 KVVQEKAKVK----IMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRY 324

Query: 65  GTSLMDSAPSFDLNISQL 83
              + D APSFDL ISQL
Sbjct: 325 SPRIRDLAPSFDLQISQL 338

[Close]

BLAST of HG10003581.1 vs. NCBI nr
Match: TYK15261.1 (hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 6.3e-04
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 5   KVVQQKGKTKKYRPKVAVDTYIEDERPKRQRKPSQKALDNKVSPKKVKEKKKVSPKKSTT 64
           KVVQ+K K K     + + T IE  RPKRQ KPS+K L+N    K V+ KK  SPK +  
Sbjct: 141 KVVQEKAKVK----IMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRY 200

Query: 65  GTSLMDSAPSFDLNISQL 83
              + D APSFDL ISQL
Sbjct: 201 SPRIRDLAPSFDLQISQL 214

[Close]

BLAST of HG10003581.1 vs. ExPASy TrEMBL
Match: A0A5A7VIA9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1081G00090 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.1e-04
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 5   KVVQQKGKTKKYRPKVAVDTYIEDERPKRQRKPSQKALDNKVSPKKVKEKKKVSPKKSTT 64
           KVVQ+K K K     + + T IE  RPKRQ KPS+K L+N    K V+ KK  SPK +  
Sbjct: 265 KVVQEKAKVK----IMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRY 324

Query: 65  GTSLMDSAPSFDLNISQL 83
              + D APSFDL ISQL
Sbjct: 325 SPRIRDLAPSFDLQISQL 338

[Close]

BLAST of HG10003581.1 vs. ExPASy TrEMBL
Match: A0A5D3CTS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00380 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.1e-04
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 5   KVVQQKGKTKKYRPKVAVDTYIEDERPKRQRKPSQKALDNKVSPKKVKEKKKVSPKKSTT 64
           KVVQ+K K K     + + T IE  RPKRQ KPS+K L+N    K V+ KK  SPK +  
Sbjct: 141 KVVQEKAKVK----IMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRY 200

Query: 65  GTSLMDSAPSFDLNISQL 83
              + D APSFDL ISQL
Sbjct: 201 SPRIRDLAPSFDLQISQL 214

[Close]

BLAST of HG10003581.1 vs. ExPASy TrEMBL
Match: A0A5A7VDY1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00110 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.1e-04
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 5   KVVQQKGKTKKYRPKVAVDTYIEDERPKRQRKPSQKALDNKVSPKKVKEKKKVSPKKSTT 64
           KVVQ+K K K     + + T IE  RPKRQ KPS+K L+N    K V+ KK  SPK +  
Sbjct: 141 KVVQEKAKVK----IMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTKH 200

Query: 65  GTSLMDSAPSFDLNISQL 83
              + D APSFDL ISQL
Sbjct: 201 SPRIRDLAPSFDLQISQL 214

[Close]

BLAST of HG10003581.1 vs. ExPASy TrEMBL
Match: A0A5D3DFX6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3009G00010 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.1e-04
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 5   KVVQQKGKTKKYRPKVAVDTYIEDERPKRQRKPSQKALDNKVSPKKVKEKKKVSPKKSTT 64
           KVVQ+K K K     + + T IE  RPKRQ KPS+K L+N    K V+ KK  SPK +  
Sbjct: 265 KVVQEKAKVK----IMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRY 324

Query: 65  GTSLMDSAPSFDLNISQL 83
              + D APSFDL ISQL
Sbjct: 325 SPRIRDLAPSFDLQISQL 338

[Close]

BLAST of HG10003581.1 vs. ExPASy TrEMBL
Match: A0A5A7UXF1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G001930 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.1e-04
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 5   KVVQQKGKTKKYRPKVAVDTYIEDERPKRQRKPSQKALDNKVSPKKVKEKKKVSPKKSTT 64
           KVVQ+K K K     + + T IE  RPKRQ KPS+K L+N    K V+ KK  SPK +  
Sbjct: 222 KVVQEKAKVK----IMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRY 281

Query: 65  GTSLMDSAPSFDLNISQL 83
              + D APSFDL ISQL
Sbjct: 282 SPRIRDLAPSFDLQISQL 295

The following BLAST results are available for this feature:

BLAST of HG10003581.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891747.1	1.7e-04	46.15	pescadillo homolog [Benincasa hispida]	[more]
XP_038880505.1	1.7e-04	47.25	glutamic acid-rich protein-like [Benincasa hispida]	[more]
XP_038885971.1	2.8e-04	47.56	chromatin modification-related protein EAF7-like [Benincasa hispida]	[more]
KAA0031317.1	6.3e-04	50.00	uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0...	[more]
TYK15261.1	6.3e-04	50.00	hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa]	[more]

BLAST of HG10003581.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10003581.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VIA9	3.1e-04	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CTS8	3.1e-04	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VDY1	3.1e-04	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DFX6	3.1e-04	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UXF1	3.1e-04	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of HG10003581.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..73

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10003581	HG10003581	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10003581.1-cds	HG10003581.1-cds-Chr08:3644067..3644081	CDS
HG10003581.1-cds	HG10003581.1-cds-Chr08:3644163..3644420	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10003581.1	HG10003581.1-protein	polypeptide