Moc06g39610.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g39610.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotran_gag_3 domain-containing protein
Location	chr6: 30971546 .. 30976813 (-)
Sequence length	1311
RNA-Seq Expression	Moc06g39610.1
Synteny	Moc06g39610.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACATGGACTCAAAGCACGAGTTCGGATCTCAGAAACACGAGGGACAATGATCAGGTACCAAGTGCACTAGGTTCAGGTTGAGCGCACCAACTTTATCGAAGTTATAGTAACACCCAGCGATCCAGGTAGGGGATTGTCTTTGACAATGCTACAATCTTTGTAGAGCTAGGAGTATTAGGTTGATTGTTGTAACCTCTTCTAGTTATGATTCTCCTCTAAATTAGTTAACTTATTCAGTATTATTTATAAATTAGTTATAAAAGGGCTCGTTGTATTCACTTCAAAATCATCTCAATATAGAAATTGTTTTATCTTCATCCCTCTCTTTAGTTCTGTTATAGTATCAGAGTCCATTGACACGCGTCACTAGGGTCATCTTTTTTTTTTCTCTCCACAAATCCACCGTGGCTGATACTTCCTCTGCTTCTTCTTCCTTCATGAATGCATCTACCATTTCTTCTCCATTGTTTAATCTTTCAAACATTTGCAATCTCATATCTATTCGACTTGATTCTACAAATTATGTGCTATGGCATTTTGAACTGTCCTCAATTCTGCGAGCACATTCCTTTTTTGGCCATGTTGACGGTTCTTCTCCTTCTCCGGAATAGTTTGTTCGATCTGCCACTGGTACTATAACCACCGAAGTCAATACCGCATTTCTTCAATGGAGTTCTCGTGATCAGGGTCTTATCACACTAATTAACGCCACACTTTCACCCTCTGCCTTAGCACATGTTGTCAGTTCCAAATCGGCGAAAGAATTATGGTTGTCCCTTGAAAAGAAGCATTCTTCTAAATCACGTTCCAGTATCCTCGAATTACGCTCCGCCCTATATACGGTAAAAAAGTCCTCTACTGAGTCTGTCGAACAATATATTCGTCGGATTAAAGATATTGTTGATCGTCTTGCTACTGCATCTATTCAAATAGATGATGAGGAAATTCTTGTTCATATTCTTAATGGTCAAACTTCAAACTTTAATGCCTTCCGCACTTCTATTAGAACACGAAATGACACTATTTCTGTAAAGGAACTTTCTGTGTTGCTTGAGGCGAGGAGAAAACATTGGCGGCACATTCTTCTTCAACTGATCATGTACCAACTGCAATGGTATCTATCAAGGGCGTGGATCTTATTCAACTAGCCAACTTTCTAATTTTGGTTGCAGCAATAATTCCTCCAATATCTCTCGAGGTGGTCGCATGTACTGTCAAATTTGTCTAAAACCAGGGCATGGGGCACTCGATTGCTACAACCGAATGAACTTTACATTTCAGGGTCGTCACCCTCCTGCTCAACTTGTGGCCATGGCGGTAAATGCAATGACCCCTTCTTCATCCTCTAATACTCACAATAATTTTTGGTTGTTAGACAGTGGCTGCAATGCACATGTGACCAATGATTTAGCCAATTTGAATCTAGTTGATTCTTACAATGGAGAGAAATCCGTCACAGTCAGCAATGTACAACCTTTAAACATTTCACACACAAGCAGTGGTATACTTTCTACATCCTCGCATGCATTTACCCTTTCCAATGTGCTTCATGCTCCTGATTTAGCCACAAATCTTATTTCAGTTCATAAATTTTGTCTGGATAATCATTGCATTTTTGTATTTGACTATGACTGGTTCCTCATTCAGGATAAGGTTACTGGCACTACTCTCTATAAACGAAAGAGTGCTAATGGACTCTACCACATTCCTAGTTCGTCTACTTTGTCGTCAGCCCGCAATGAGTTACATCCAAAAAACTGTGCTCTTCTTGCAAAAACGGAGTCTTATCTTTGGCATCATCGGCTTGGCCATCCTTCACCAAAAATATTACGTCATGCTTTGTCTACATTTGGTTTGTCAATTTCTCATTCCTTTAATACTTGTCAATGCACTAGTTGTCTTAAGGCAAAAATGTCTAAACTATCATTTCCTATGTCTCACTCATCTTATTTTGCTCCTCTTGAACTTGTTCACAGTGATGTTTGGGGACCTTCTCCTGTTATTTCTCTGACTGGATGTCGCTATTATGTTAGTTTTATGGACAATTTTAGCAAGTTTACCTGGCTTTTTACAATTGCAAATAAATCTGATGTGAGTGCTATTCTTCATAAATTTGTGTCATTTGTTGAAAATCTTCTCTCATCTAAGCTTAAAACTTGTTGTTCTGATGGTGGTGGTGAGTTTGTTAATTCGTCATTTCTTCCTTATTTGAATCTAAAGGTATTTTACATAAAAAATCTTGTCCTTATACTCCTGAGCAAAATGGTGTTGCTGAATGTAAACACAGGCACATTGTTGAAACTGCTCTATCATTGATGTTTCATTCTTCAACACCTGCTGAATTTTGGCCTTATGCATTTTCTACCGCCGTCTTTCTTATAAATAGAATGCCCACTCCTCTTGTTGCGTTTTCGCCTTTTGAAAAACTTTTTGGTAAGACTTCGGATTTGCTTCATTTAAACGTTTTTGGATGTGCCTGTTATCCCTTATTAAAACCATACACTAAACATAAACTTGAGCCCAAAACATCTCAACATGTTTTTCTCGGCTATACACTTGACTTCAAAGGCTATATTTGTTTTAATCCCACTACGCGTAAGTCTATAGTTTCTCGTCATATTGTGTTCCATGAAACTGTCTTCCCTTTTTCCCAACCTAATACTCCTACTTCCCATGTCTCCTCCTCCATAGATCCTACAATTCTTCTCAAGCACCTCTCAACCTTGAACCATGCCCAACCATTACCTCATTACGAGCTGCCCAGTCCTTGTGACCACCTTGTCATTGTTTCTTCTTCCTCCACTGCTCTAAATTTTTGTGTTGTCCCTGTCCCACCTGCACATAACATGTCCTTTTCTTCTACTCCATTGCCGACTGCTCTGACTAATGCATCCACTGTTGTTACGCCTGATCCTGTTGTCCCTGAGGCCTTCTTTCCTCATGAAAACCCTACATTATCCTCTTTCCCTATTGTTTCACCAGGCGATCCTACTTGTTCATCCACTTCTTGCAGTTCAGCCACTGATGTTCGCCCCATTAATGTTCATCCGATGCAAACACGGGCAAAGTCGGGTATTTTTAAGCCCCGGGCCTATTCCGTTCTCAGTGAGTCCATAACTATTCCTATAGAACCTTTTTCATACACTGAGGCTGCCAAGTTTTCTGAATGGAGAGCTGCCATGTCAGATGAATTTTTAGCTCTCTAGGAGCAAGGTACATGGTTACTTGTCCCTCGAACACCCGATATGAATGTTGTTGGTTGTAAATGGTTGTTTCGCACTAAGTTCAATCCTGATGGCTCTATCGCCCGTTATAAGGCTCGATTGGTGGCTAAGGGTTATCATTAAATGGAGGGCTTGGATTTTGATGAGACCTTCAGACCTGTTGTTAAAAAGCCTACTATCCGAGTTGTACTGTCTCTTGCTGCTCATTTTAATTGGTCACTTACTCAGCTTGACGTCAAGAATGCCCTTTTGCATGGTAATCTTTAGGAAGATGTTTTTATGTCTCAGCCCGTTGGTTTTATTGATACGTTTTGCCCTGATTACGTTTGCTGCTTACACAAAAGTTTGTATGGCCTAAAACAGGCTCTTCGGGCTTGGTTTGAACGCTTCACCAATTATCTGATCACACTTGGGTTAGAGGTTTCTCTTGCTGATACTTCTTTATTTGTACGGTCTGTTGATGGATCTCTGACTTTTCTCCTCTTATACGTGGATGATATTATAATCACTGGTCTCGATTCTTCCTACATTGCTGTTCTCAAGAAAGCTCTAGCTACTGAATTCCAAATATCTGATTTTGGTGCTCTGAGGTACTTTCTGGGTTTAGAAATTAAGTTCTTACCTATTGGTATTTTTGTGAATCAAGCAAAGTACTTACAAGATTTATTAGTCCGTTCTGGAATGTGCTTGGCCAAATCATGCTCCACTCCTATGTCCACTTCTATAGATCTCCATGCTTCTGCACCCATGTTTACTGATGCATCTCCCTATCGTCAATTGGTGGGTTCATTACAATATTTGACGTTTACTCGTTCTGACATTACTTTCTCTTTCAATCGGGTTAGTCAGTTCATGCAACATCCCACAGTTGTTCATTATTCTGCGATTAAACGTATTTTGCGATATCTAAATGGCACCAAGGATCTTGGTATTTTGTTTTAGAATAATGCCTTGACCCTTTCTGCCTTTTATGATGCTGATTGGGCTGGAGATGCTATTGATCGCCGATCTACCACTGGCTTTGTTGCATTTCTTGGCTTGAGCCCTATTTCTTGGTCGACCAAAAAGCGACATACTATGTCTCCTTCTTCTACTGAAGTTGAGTATCGGTCTTTGGCCACTACTACTGCTGACTTATAATGGCTACAACCACTTTTATGTGGCTTTCTTGTCTATTTGAAAGACCCCCCATATTATGGTGTGATAATGTTTCAGCAATATCTCTTGCCAGCAACCCGGTGTTCCATGCTCGCACCAAACACATAGAAATTGATTATCATTTTGTTCGTGAAAAGTTCGTGCGCAAGGATATTTCTGTTCGCTTTGTGTCATCCAAAGACCAAATTGCTGATTTATTTACCAAGGCGCTGTCTACACAAGCCTTTTTATCTTTACGTAGCAAACTCATGTTTTTCTGTTCAACCTTGAGTAGTTTGAGGGGGTGTATTAGGTTGATTGTTGTAACCTCCTCTAGTTATGATTCTCCTCTAAATTAGCTAACTTATTCAGTATTATTTGTAAATTAGTTATACTTAGGCTCTATAAAAGGTCTCCTTGTATTCACTTCAAAATCATCTCAATATAGAAATTGTTCTATCTTCATCCCTCTCTTTAGTTCTGTTAAGGAGGACAATAGGGACAGAATGTGGGGATCATGCATCTCCCACTCAGGTCTCTCTCGTCCTCTCCATCTCTCCATAAAGTGAAGGTCGGGAAGCCTTTGAAGGAGGCTAGTATGCAAATTCTCTTGCCATAAATCTTAGTGTCTCATACTCATTGTAACTTATGCATCTGAGTGAAATCGACAAAGCACCACATCGGTATTAGGTTTCTATGTAGGTCTAGCTGCGTTTGAAGATAAAGACATATGTAGTACCTACGCGGTGCCTACGTAGCACATACTCACAAATCGAAATTAACAATTGACGTCATCTGTGACAAGAGTTTAATGCAAGTCCTATCCCTTGCAGAAAAGCAGTCCGAGGCGAGTGATGAAGAAAAACCTAGGACAAACACACTCATAGGGCTTACGTTTTGA

mRNA sequence

ATGAACACATGGACTCAAAGCACGAGTTCGGATCTCAGAAACACGAGGGACAATGATCAGTTTGTTCGATCTGCCACTGGTACTATAACCACCGAAGTCAATACCGCATTTCTTCAATGGAGTTCTCGTGATCAGGGTCTTATCACACTAATTAACGCCACACTTTCACCCTCTGCCTTAGCACATGTTGTCAGTTCCAAATCGGCGAAAGAATTATGGTTGTCCCTTGAAAAGAAGCATTCTTCTAAATCACGTTCCAGTATCCTCGAATTACGCTCCGCCCTATATACGGTAAAAAAGTCCTCTACTGAGTCTGTCGAACAATATATTCGTCGGATTAAAGATATTGTTGATCGTCTTGCTACTGCATCTATTCAAATAGATGATGAGGAAATTCTTGTTCATATTCTTAATGGTCAAACTTCAAACTTTAATGCCTTCCGCACTTCTATTAGAACACGAAATGACACTATTTCTGTAAAGGAACTTTCTGTGTTGCTTGAGGCGAGGAGAAAACATTGGCGGCACATTCTTCTTCAACTGATCATGTACCAACTGCAATGCAATAATTCCTCCAATATCTCTCGAGGTGGTCGCATGTACTGTCAAATTTGTCTAAAACCAGGGCATGGGGCACTCGATTGCTACAACCGAATGAACTTTACATTTCAGGGTCGTCACCCTCCTGCTCAACTTGTGGCCATGGCGGTAAATGCAATGACCCCTTCTTCATCCTCTAATACTCACAATAATTTTTGGTTGTTAGACAGTGGCTGCAATGCACATGTGACCAATGATTTAGCCAATTTGAATCTAGTTGATTCTTACAATGGAGAGAAATCCGTCACAGTCAGCAATGTACAACCTTTAAACATTTCACACACAAGCAGTGGTATACTTTCTACATCCTCGCATGCATTTACCCTTTCCAATGTGCTTCATGCTCCTGATTTAGCCACAAATCTTATTTCAGTTCATAAATTTTGTCTGGATAATCATTGCATTTTTGTATTTGACTATGACTGGTTCCTCATTCAGGATAAGGTTACTGGCACTACTCTCTATAAACGAAAGAGTGCTAATGGACTCTACCACATTCCTAGTTCGTCTACTTTGTCGTCAGCCCGCAATGAGTTACATCCAAAAAACTGTGCTCTTCTTGCAAAAACGGAGTCTTATCTTTGGCATCATCGGCTTGGCCATCCTTCACCAAAAATATTACGTCATGCTTTGTCTACATTTGAAAAGCAGTCCGAGGCGAGTGATGAAGAAAAACCTAGGACAAACACACTCATAGGGCTTACGTTTTGA

Coding sequence (CDS)

ATGAACACATGGACTCAAAGCACGAGTTCGGATCTCAGAAACACGAGGGACAATGATCAGTTTGTTCGATCTGCCACTGGTACTATAACCACCGAAGTCAATACCGCATTTCTTCAATGGAGTTCTCGTGATCAGGGTCTTATCACACTAATTAACGCCACACTTTCACCCTCTGCCTTAGCACATGTTGTCAGTTCCAAATCGGCGAAAGAATTATGGTTGTCCCTTGAAAAGAAGCATTCTTCTAAATCACGTTCCAGTATCCTCGAATTACGCTCCGCCCTATATACGGTAAAAAAGTCCTCTACTGAGTCTGTCGAACAATATATTCGTCGGATTAAAGATATTGTTGATCGTCTTGCTACTGCATCTATTCAAATAGATGATGAGGAAATTCTTGTTCATATTCTTAATGGTCAAACTTCAAACTTTAATGCCTTCCGCACTTCTATTAGAACACGAAATGACACTATTTCTGTAAAGGAACTTTCTGTGTTGCTTGAGGCGAGGAGAAAACATTGGCGGCACATTCTTCTTCAACTGATCATGTACCAACTGCAATGCAATAATTCCTCCAATATCTCTCGAGGTGGTCGCATGTACTGTCAAATTTGTCTAAAACCAGGGCATGGGGCACTCGATTGCTACAACCGAATGAACTTTACATTTCAGGGTCGTCACCCTCCTGCTCAACTTGTGGCCATGGCGGTAAATGCAATGACCCCTTCTTCATCCTCTAATACTCACAATAATTTTTGGTTGTTAGACAGTGGCTGCAATGCACATGTGACCAATGATTTAGCCAATTTGAATCTAGTTGATTCTTACAATGGAGAGAAATCCGTCACAGTCAGCAATGTACAACCTTTAAACATTTCACACACAAGCAGTGGTATACTTTCTACATCCTCGCATGCATTTACCCTTTCCAATGTGCTTCATGCTCCTGATTTAGCCACAAATCTTATTTCAGTTCATAAATTTTGTCTGGATAATCATTGCATTTTTGTATTTGACTATGACTGGTTCCTCATTCAGGATAAGGTTACTGGCACTACTCTCTATAAACGAAAGAGTGCTAATGGACTCTACCACATTCCTAGTTCGTCTACTTTGTCGTCAGCCCGCAATGAGTTACATCCAAAAAACTGTGCTCTTCTTGCAAAAACGGAGTCTTATCTTTGGCATCATCGGCTTGGCCATCCTTCACCAAAAATATTACGTCATGCTTTGTCTACATTTGAAAAGCAGTCCGAGGCGAGTGATGAAGAAAAACCTAGGACAAACACACTCATAGGGCTTACGTTTTGA

Protein sequence

MNTWTQSTSSDLRNTRDNDQFVRSATGTITTEVNTAFLQWSSRDQGLITLINATLSPSALAHVVSSKSAKELWLSLEKKHSSKSRSSILELRSALYTVKKSSTESVEQYIRRIKDIVDRLATASIQIDDEEILVHILNGQTSNFNAFRTSIRTRNDTISVKELSVLLEARRKHWRHILLQLIMYQLQCNNSSNISRGGRMYCQICLKPGHGALDCYNRMNFTFQGRHPPAQLVAMAVNAMTPSSSSNTHNNFWLLDSGCNAHVTNDLANLNLVDSYNGEKSVTVSNVQPLNISHTSSGILSTSSHAFTLSNVLHAPDLATNLISVHKFCLDNHCIFVFDYDWFLIQDKVTGTTLYKRKSANGLYHIPSSSTLSSARNELHPKNCALLAKTESYLWHHRLGHPSPKILRHALSTFEKQSEASDEEKPRTNTLIGLTF

Homology

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BLAST of Moc06g39610.1 vs. NCBI nr
Match: XP_022158189.1 (uncharacterized protein LOC111024722 [Momordica charantia])

HSP 1 Score: 322.8 bits (826), Expect = 4.6e-84
Identity = 160/180 (88.89%), Postives = 164/180 (91.11%), Query Frame = 0


Query: 235 MAVNAMTPSSSSNTHNNFWLLDSGCNAHVTNDLANLNLVDSYNGEKSVTVSNVQPLNISH 294
           MAVNAMTPSSSSNTHNNFWL DSGCNAHVTNDL NLNLVDSYNGE+ VTV N Q LNISH
Sbjct: 1   MAVNAMTPSSSSNTHNNFWLSDSGCNAHVTNDLDNLNLVDSYNGEEFVTVGNGQSLNISH 60

Query: 295 TSSGILSTSSHAFTLSNVLHAPDLATNLISVHKFCLDNHCIFVFDYDWFLIQDKVTGTTL 354
           T SGILS SSHAFT+SNVLHAPDLATNL+SVHKFCLDNHCIFV+D DWFLIQDKVT TTL
Sbjct: 61  TGSGILSASSHAFTISNVLHAPDLATNLLSVHKFCLDNHCIFVYDSDWFLIQDKVTDTTL 120

Query: 355 YKRKSANGLYHIPSSSTLSSARNELHPKNCALLAKTESYLWHHRLGHPSPKILRHALSTF 414
           YK KS NGLY IPSSSTLSSARNELHPKNCALLAK  SYLWHHRLGH SPKILRHALSTF
Sbjct: 121 YKGKSVNGLYPIPSSSTLSSARNELHPKNCALLAKAGSYLWHHRLGHHSPKILRHALSTF 180

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BLAST of Moc06g39610.1 vs. NCBI nr
Match: KAA8524269.1 (hypothetical protein F0562_010692 [Nyssa sinensis])

HSP 1 Score: 291.2 bits (744), Expect = 1.5e-74
Identity = 173/484 (35.74%), Postives = 268/484 (55.37%), Query Frame = 0


Query: 19  DQFVRSATGTITTEVNTAFLQWSSRDQGLITLINATLSPSALAHVVSSKSAKELWLSLEK 78
           ++FV+   G  T ++N  +  W+++DQ L+TL+NATLS +AL+HV+   +++E WL+LE+
Sbjct: 95  NKFVQDERGAATAQINPEYQIWNTQDQALMTLLNATLSQTALSHVIGYSTSREAWLALER 154

Query: 79  KHSSKSRSSILELRSALYTVKKSSTESVEQYIRRIKDIVDRLATASIQIDDEEILVHILN 138
           + S+ +RS+IL+L+SAL+ + K   +S++ YI++IK   D LA+ S+ I+DE+IL+++LN
Sbjct: 155 RFSASTRSNILQLKSALHNISKGK-DSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLN 214

Query: 139 GQTSNFNAFRTSIRTRNDTISVKELSVLLEARRKHWRHILLQ---------LIMYQLQCN 198
           G    +NAF+TSIRT+++ I+++E+  +L+   +    +  Q         ++    + N
Sbjct: 215 GLPQEYNAFKTSIRTKSENITLEEVYAMLKIEEQTIESVHKQNNSPPFPGAMMATNYRPN 274

Query: 199 NSSN------------------ISRGGRMY------------------------------ 258
            SSN                   +RGGRM+                              
Sbjct: 275 FSSNRGYSPSNFSGRGRGRGRFSNRGGRMHSFGRFQSPNFGQSNLPYPTKQPQQSNQRSN 334

Query: 259 ------CQICLKPGHGALDCYNRMNFTFQGRHPPAQLVAMAVNAMTPSSSSNTHNNFWLL 318
                 CQIC K GH ALDCY+RM+F++QG+ P  QL AM+    T ++ S+   N+W  
Sbjct: 335 NSHPVVCQICNKNGHSALDCYHRMDFSYQGKPPSPQLTAMSA---TYNTGSDCSPNYWYT 394

Query: 319 DSGCNAHVTNDLANLNLVDSYNGEKSVTVSNVQPLNISHTSSGILSTSSHAFTLSNVLHA 378
           D+G   H+T DLANLN    Y G+ ++T++N Q L+ISH+    +  + H F L+NVL  
Sbjct: 395 DTGATNHITADLANLNFPVEYQGDDNITIANGQALDISHSGQSSIHANDHTFRLNNVLCV 454

Query: 379 PDLATNLISVHKFCLDNHCIFVFDYDWFLIQDKVTGTTLYKRKSANGLYHIPSSSTLSSA 414
           P +ATNL+SVH+FC DNHC F+FD + F IQDK T   L++  S +GLY +P+SS    +
Sbjct: 455 PSMATNLLSVHQFCKDNHCRFIFDSEMFQIQDKATKQLLFQGPSDHGLYPLPTSSITKHS 514

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BLAST of Moc06g39610.1 vs. NCBI nr
Match: KAA0067173.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26022.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.0 bits (728), Expect = 1.1e-72
Identity = 184/423 (43.50%), Postives = 218/423 (51.54%), Query Frame = 0


Query: 24  SATGTITTEVNTAFLQWSSRDQGLITLINATLSPSALAHVVSSKSAKELWLSLEKKHSSK 83
           S+T    +E+N  +LQW SR Q LITLINATLS SALAHVV S S+K LWLSLE      
Sbjct: 83  SSTLGTNSEINPEYLQWLSRSQALITLINATLSSSALAHVVGSVSSKALWLSLE------ 142

Query: 84  SRSSILELRSALYTVKKSSTESVEQYIRRIKDIVDRLATASIQIDDEEILVHILNGQTSN 143
                                         K ++D+L  ASI ++DEEILVH LNG   +
Sbjct: 143 ------------------------------KPLIDKLVAASISLEDEEILVHTLNGLPVS 202

Query: 144 FNAFRTSIRTRNDTISVKELSVLL---------------------------------EAR 203
           FNAFRTSIRTR+  IS++EL  LL                                   R
Sbjct: 203 FNAFRTSIRTRSGNISLEELHTLLISEETTMAKTSAIEAIPTAMAAFHPSQHHSSRGRGR 262

Query: 204 RKHW--------------RHILLQLIMYQLQCNNS------------------------- 263
           R H               R I        L+ NN+                         
Sbjct: 263 RFHSTGNPIFNSSPNSSNRGINFASGSRGLESNNNFGTQPNHFQPNYNNHGPFLPPSHFT 322

Query: 264 -----------------------SNISRGGRMYCQICLKPGHGALDCYNRMNFTFQGRHP 323
                                  +N    GR++CQIC K  HGALDCYN MNF++Q RH 
Sbjct: 323 PVHPNQRGIIGSSPSHGPSFRLEANSGYNGRIFCQICHKQEHGALDCYNHMNFSYQDRHS 382

Query: 324 PAQLVAMAVNAMTPSSSSNTHNNFWLLDSGCNAHVTNDLANLNLVDSYNGEKSVTVSNVQ 352
           P+QL AMAVN+M    SS   NNFWL DSG N H+TN+LANLNL ++YNGE++VTV N Q
Sbjct: 383 PSQLAAMAVNSMNSQISSENTNNFWLSDSGYNVHMTNELANLNLSNNYNGEETVTVGNGQ 442

[Close]

BLAST of Moc06g39610.1 vs. NCBI nr
Match: KAA8519786.1 (hypothetical protein F0562_014124 [Nyssa sinensis])

HSP 1 Score: 275.4 bits (703), Expect = 8.4e-70
Identity = 155/415 (37.35%), Postives = 244/415 (58.80%), Query Frame = 0


Query: 19  DQFVRSATGTITTEVNTAFLQWSSRDQGLITLINATLSPSALAHVVSSKSAKELWLSLEK 78
           ++FV+   G  T ++N  +  W+++DQ L+TL+NATLS +AL+HV+   +++E WL+LE+
Sbjct: 95  NKFVQDERGAATAQINPEYQIWNTQDQALMTLLNATLSQTALSHVIGYSTSREAWLALER 154

Query: 79  KHSSKSRSSILELRSALYTVKKSSTESVEQYIRRIKDIVDRLATASIQIDDEEILVHILN 138
           + S+ +RS+IL+L+SAL+ + K   +S++ YI++IK   D LA+ S+ I+DE+IL+++LN
Sbjct: 155 RFSASTRSNILQLKSALHNISKGK-DSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLN 214

Query: 139 GQTSNFNAFRTSIRTRNDTISVKELSVLLEARRKHWRHILLQ---------LIMYQLQCN 198
           G    +NAF+TSIRT+++ I+++E+  +L+   +    +  Q         ++    + N
Sbjct: 215 GLPQEYNAFKTSIRTKSENITLEEVYAMLKIEEQTIESVHKQNNSPPFPGAMMATNYRPN 274

Query: 199 NSSN------------------ISRGGRMY------------------------------ 258
            SSN                   +RGGRM+                              
Sbjct: 275 FSSNRGYSPSNFSGRGRGRGRFSNRGGRMHSFGRFQSPNFGQSNLPYPTKQPQQSNQRSN 334

Query: 259 ------CQICLKPGHGALDCYNRMNFTFQGRHPPAQLVAMAVNAMTPSSSSNTHNNFWLL 318
                 CQIC K GH ALDCY+RM+F++QG+ P  QL AM+    T ++ S+   N+W  
Sbjct: 335 NSHPVVCQICNKNGHSALDCYHRMDFSYQGKPPSPQLTAMSA---TYNTGSDCSPNYWYT 394

Query: 319 DSGCNAHVTNDLANLNLVDSYNGEKSVTVSNVQPLNISHTSSGILSTSSHAFTLSNVLHA 371
           D+G   H+T DLANLN    Y G+ ++T++N Q L+ISH+    +  + H F L+NVL  
Sbjct: 395 DTGATNHITADLANLNFPVEYQGDDNITIANGQALDISHSGQSSIHANDHTFRLNNVLCV 454

[Close]

BLAST of Moc06g39610.1 vs. NCBI nr
Match: KAA8535282.1 (hypothetical protein F0562_030285 [Nyssa sinensis])

HSP 1 Score: 274.6 bits (701), Expect = 1.4e-69
Identity = 155/415 (37.35%), Postives = 244/415 (58.80%), Query Frame = 0


Query: 19  DQFVRSATGTITTEVNTAFLQWSSRDQGLITLINATLSPSALAHVVSSKSAKELWLSLEK 78
           ++FV+   G  T ++N  +  W+++DQ L+TL+NATLS +AL+HV+   +++E WL+LE+
Sbjct: 95  NKFVQDERGAATAQINPEYQIWNTQDQALMTLLNATLSQTALSHVIGYSTSREAWLALER 154

Query: 79  KHSSKSRSSILELRSALYTVKKSSTESVEQYIRRIKDIVDRLATASIQIDDEEILVHILN 138
           + S+ +RS+IL+L+SAL+ + K   +S++ YI++IK   D LA+ S+ I+DE+IL+++LN
Sbjct: 155 RFSASTRSNILQLKSALHNISKGK-DSIDSYIQKIKRARDSLASVSVLIEDEDILIYVLN 214

Query: 139 GQTSNFNAFRTSIRTRNDTISVKELSVLLEARRKHWRHILLQ---------LIMYQLQCN 198
           G    +NAF+TSIRT+++ I+++E+  +L+   +    +  Q         ++    + N
Sbjct: 215 GLPQEYNAFKTSIRTKSENITLEEVYAMLKIEEQTIESVHKQNNSPPFPGAMMATNYRPN 274

Query: 199 NSSN------------------ISRGGRMY------------------------------ 258
            SSN                   +RGGRM+                              
Sbjct: 275 FSSNRGYSPSNFSGRGRGRGRFSNRGGRMHSFGRFQSPNFGQSNLPYPTKQPQQSNQRSN 334

Query: 259 ------CQICLKPGHGALDCYNRMNFTFQGRHPPAQLVAMAVNAMTPSSSSNTHNNFWLL 318
                 CQIC K GH ALDCY+RM+F++QG+ P  QL AM+    T ++ S+   N+W  
Sbjct: 335 NSHPVVCQICNKNGHSALDCYHRMDFSYQGKPPSPQLTAMSA---TYNTGSDCSPNYWYT 394

Query: 319 DSGCNAHVTNDLANLNLVDSYNGEKSVTVSNVQPLNISHTSSGILSTSSHAFTLSNVLHA 371
           D+G   H+T DLANLN    Y G+ ++T++N Q L+ISH+    +  + H F L+NVL  
Sbjct: 395 DTGATNHITADLANLNFPVEYQGDDNITIANGQALDISHSGQSSIHANDHTFRLNNVLCV 454

[Close]

BLAST of Moc06g39610.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.0e-26
Identity = 110/429 (25.64%), Postives = 183/429 (42.66%), Query Frame = 0


Query: 33  VNTAFLQWSSRDQGLITLINATLSPSALAHVVSSKSAKELWLSLEKKHSSKSRSSILELR 92
           VN  + +W  +D+ + + +   +S S    V  + +A ++W +L K +++ S   + +LR
Sbjct: 70  VNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLR 129

Query: 93  SALYTVKKSSTESVEQYIRRIKDIVDRLATASIQIDDEEILVHILNGQTSNFNAFRTSIR 152
           + L    K  T++++ Y++ +    D+LA     +D +E +  +L      +      I 
Sbjct: 130 TQLKQWTK-GTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIA 189

Query: 153 TRNDTISVKEL--------SVLLEARRKHWRHILLQLIMYQ--LQCNNSSNISRGGRM-- 212
            ++   ++ E+        S +L         I    + ++     NN++N +R  R   
Sbjct: 190 AKDTPPTLTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTNNNNNGNRNNRYDN 249

Query: 213 -----------------------------YCQICLKPGHGALDCYNRMNF--TFQGRHPP 272
                                         CQIC   GH A  C    +F  +   + PP
Sbjct: 250 RNNNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQPP 309

Query: 273 AQLVAMAVNAMTPSSSSNTHNNFWLLDSGCNAHVTNDLANLNLVDSYNGEKSVTVSNVQP 332
           +        A     S  + NN WLLDSG   H+T+D  NL+L   Y G   V V++   
Sbjct: 310 SPFTPWQPRANLALGSPYSSNN-WLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGST 369

Query: 333 LNISHTSSGILSTSSHAFTLSNVLHAPDLATNLISVHKFCLDNHCIFVFDYDWFLIQDKV 392
           + ISHT S  LST S    L N+L+ P++  NLISV++ C  N     F    F ++D  
Sbjct: 370 IPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLN 429

Query: 393 TGTTLYKRKSANGLYHIPSSSTLSSARNELHPKNCALLAKTESYL----WHHRLGHPSPK 415
           TG  L + K+ + LY  P +S+          +  +L A   S      WH RLGHP+P 
Sbjct: 430 TGVPLLQGKTKDELYEWPIASS----------QPVSLFASPSSKATHSSWHARLGHPAPS 486

[Close]

BLAST of Moc06g39610.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.2e-22
Identity = 106/410 (25.85%), Postives = 174/410 (42.44%), Query Frame = 0


Query: 33  VNTAFLQWSSRDQGLITLINATLSPSALAHVVSSKSAKELWLSLEKKHSSKSRSSILELR 92
           VN  + +W  +D+ + + I   +S S    V  + +A ++W +L K +++ S   + +LR
Sbjct: 70  VNPDYTRWRRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLR 129

Query: 93  -------SALYTVKKSSTESVEQYIRRIKD----IVDRLATASIQIDDEEILVHILNGQ- 152
                   AL        E VE+ +  + D    ++D++A         EI   ++N + 
Sbjct: 130 FITRFDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHERLINRES 189

Query: 153 -------------TSNFNAFRTSIRTRNDTISVKELSVLLEARRKHWRHILLQLIMYQLQ 212
                        T+N    R +   RN                +++ +   +   +Q  
Sbjct: 190 KLLALNSAEVVPITANVVTHRNTNTNRNQN---------NRGDNRNYNNNNNRSNSWQPS 249

Query: 213 CNNSSNISRGGRMY---CQICLKPGHGALDC--YNRMNFTFQGRHPPAQLVAMAVNAMTP 272
            + S + +R  + Y   CQIC   GH A  C   ++   T   +   +        A   
Sbjct: 250 SSGSRSDNRQPKPYLGRCQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQPRANLA 309

Query: 273 SSSSNTHNNFWLLDSGCNAHVTNDLANLNLVDSYNGEKSVTVSNVQPLNISHTSSGILST 332
            +S    NN WLLDSG   H+T+D  NL+    Y G   V +++   + I+HT S  L T
Sbjct: 310 VNSPYNANN-WLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPT 369

Query: 333 SSHAFTLSNVLHAPDLATNLISVHKFCLDNHCIFVFDYDWFLIQDKVTGTTLYKRKSANG 392
           SS +  L+ VL+ P++  NLISV++ C  N     F    F ++D  TG  L + K+ + 
Sbjct: 370 SSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDE 429

Query: 393 LYHIPSSSTLSSARNELHPKNCALLAKTESYLWHHRLGHPSPKILRHALS 413
           LY  P +   SS    +    C   +K     WH RLGHPS  IL   +S
Sbjct: 430 LYEWPIA---SSQAVSMFASPC---SKATHSSWHSRLGHPSLAILNSVIS 463

[Close]

BLAST of Moc06g39610.1 vs. ExPASy TrEMBL
Match: A0A6J1DYN6 (uncharacterized protein LOC111024722 OS=Momordica charantia OX=3673 GN=LOC111024722 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.2e-84
Identity = 160/180 (88.89%), Postives = 164/180 (91.11%), Query Frame = 0


Query: 235 MAVNAMTPSSSSNTHNNFWLLDSGCNAHVTNDLANLNLVDSYNGEKSVTVSNVQPLNISH 294
           MAVNAMTPSSSSNTHNNFWL DSGCNAHVTNDL NLNLVDSYNGE+ VTV N Q LNISH
Sbjct: 1   MAVNAMTPSSSSNTHNNFWLSDSGCNAHVTNDLDNLNLVDSYNGEEFVTVGNGQSLNISH 60

Query: 295 TSSGILSTSSHAFTLSNVLHAPDLATNLISVHKFCLDNHCIFVFDYDWFLIQDKVTGTTL 354
           T SGILS SSHAFT+SNVLHAPDLATNL+SVHKFCLDNHCIFV+D DWFLIQDKVT TTL
Sbjct: 61  TGSGILSASSHAFTISNVLHAPDLATNLLSVHKFCLDNHCIFVYDSDWFLIQDKVTDTTL 120

Query: 355 YKRKSANGLYHIPSSSTLSSARNELHPKNCALLAKTESYLWHHRLGHPSPKILRHALSTF 414
           YK KS NGLY IPSSSTLSSARNELHPKNCALLAK  SYLWHHRLGH SPKILRHALSTF
Sbjct: 121 YKGKSVNGLYPIPSSSTLSSARNELHPKNCALLAKAGSYLWHHRLGHHSPKILRHALSTF 180

[Close]

BLAST of Moc06g39610.1 vs. ExPASy TrEMBL
Match: A0A5J5A1U7 (Integrase catalytic domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_010692 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 7.2e-75
Identity = 173/484 (35.74%), Postives = 268/484 (55.37%), Query Frame = 0


Query: 19  DQFVRSATGTITTEVNTAFLQWSSRDQGLITLINATLSPSALAHVVSSKSAKELWLSLEK 78
           ++FV+   G  T ++N  +  W+++DQ L+TL+NATLS +AL+HV+   +++E WL+LE+
Sbjct: 95  NKFVQDERGAATAQINPEYQIWNTQDQALMTLLNATLSQTALSHVIGYSTSREAWLALER 154

Query: 79  KHSSKSRSSILELRSALYTVKKSSTESVEQYIRRIKDIVDRLATASIQIDDEEILVHILN 138
           + S+ +RS+IL+L+SAL+ + K   +S++ YI++IK   D LA+ S+ I+DE+IL+++LN
Sbjct: 155 RFSASTRSNILQLKSALHNISKGK-DSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLN 214

Query: 139 GQTSNFNAFRTSIRTRNDTISVKELSVLLEARRKHWRHILLQ---------LIMYQLQCN 198
           G    +NAF+TSIRT+++ I+++E+  +L+   +    +  Q         ++    + N
Sbjct: 215 GLPQEYNAFKTSIRTKSENITLEEVYAMLKIEEQTIESVHKQNNSPPFPGAMMATNYRPN 274

Query: 199 NSSN------------------ISRGGRMY------------------------------ 258
            SSN                   +RGGRM+                              
Sbjct: 275 FSSNRGYSPSNFSGRGRGRGRFSNRGGRMHSFGRFQSPNFGQSNLPYPTKQPQQSNQRSN 334

Query: 259 ------CQICLKPGHGALDCYNRMNFTFQGRHPPAQLVAMAVNAMTPSSSSNTHNNFWLL 318
                 CQIC K GH ALDCY+RM+F++QG+ P  QL AM+    T ++ S+   N+W  
Sbjct: 335 NSHPVVCQICNKNGHSALDCYHRMDFSYQGKPPSPQLTAMSA---TYNTGSDCSPNYWYT 394

Query: 319 DSGCNAHVTNDLANLNLVDSYNGEKSVTVSNVQPLNISHTSSGILSTSSHAFTLSNVLHA 378
           D+G   H+T DLANLN    Y G+ ++T++N Q L+ISH+    +  + H F L+NVL  
Sbjct: 395 DTGATNHITADLANLNFPVEYQGDDNITIANGQALDISHSGQSSIHANDHTFRLNNVLCV 454

Query: 379 PDLATNLISVHKFCLDNHCIFVFDYDWFLIQDKVTGTTLYKRKSANGLYHIPSSSTLSSA 414
           P +ATNL+SVH+FC DNHC F+FD + F IQDK T   L++  S +GLY +P+SS    +
Sbjct: 455 PSMATNLLSVHQFCKDNHCRFIFDSEMFQIQDKATKQLLFQGPSDHGLYPLPTSSITKHS 514

[Close]

BLAST of Moc06g39610.1 vs. ExPASy TrEMBL
Match: A0A5A7VGG0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G00280 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 5.2e-73
Identity = 184/423 (43.50%), Postives = 218/423 (51.54%), Query Frame = 0


Query: 24  SATGTITTEVNTAFLQWSSRDQGLITLINATLSPSALAHVVSSKSAKELWLSLEKKHSSK 83
           S+T    +E+N  +LQW SR Q LITLINATLS SALAHVV S S+K LWLSLE      
Sbjct: 83  SSTLGTNSEINPEYLQWLSRSQALITLINATLSSSALAHVVGSVSSKALWLSLE------ 142

Query: 84  SRSSILELRSALYTVKKSSTESVEQYIRRIKDIVDRLATASIQIDDEEILVHILNGQTSN 143
                                         K ++D+L  ASI ++DEEILVH LNG   +
Sbjct: 143 ------------------------------KPLIDKLVAASISLEDEEILVHTLNGLPVS 202

Query: 144 FNAFRTSIRTRNDTISVKELSVLL---------------------------------EAR 203
           FNAFRTSIRTR+  IS++EL  LL                                   R
Sbjct: 203 FNAFRTSIRTRSGNISLEELHTLLISEETTMAKTSAIEAIPTAMAAFHPSQHHSSRGRGR 262

Query: 204 RKHW--------------RHILLQLIMYQLQCNNS------------------------- 263
           R H               R I        L+ NN+                         
Sbjct: 263 RFHSTGNPIFNSSPNSSNRGINFASGSRGLESNNNFGTQPNHFQPNYNNHGPFLPPSHFT 322

Query: 264 -----------------------SNISRGGRMYCQICLKPGHGALDCYNRMNFTFQGRHP 323
                                  +N    GR++CQIC K  HGALDCYN MNF++Q RH 
Sbjct: 323 PVHPNQRGIIGSSPSHGPSFRLEANSGYNGRIFCQICHKQEHGALDCYNHMNFSYQDRHS 382

Query: 324 PAQLVAMAVNAMTPSSSSNTHNNFWLLDSGCNAHVTNDLANLNLVDSYNGEKSVTVSNVQ 352
           P+QL AMAVN+M    SS   NNFWL DSG N H+TN+LANLNL ++YNGE++VTV N Q
Sbjct: 383 PSQLAAMAVNSMNSQISSENTNNFWLSDSGYNVHMTNELANLNLSNNYNGEETVTVGNGQ 442

[Close]

BLAST of Moc06g39610.1 vs. ExPASy TrEMBL
Match: A0A5J4ZPW7 (Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_014124 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 4.1e-70
Identity = 155/415 (37.35%), Postives = 244/415 (58.80%), Query Frame = 0


Query: 19  DQFVRSATGTITTEVNTAFLQWSSRDQGLITLINATLSPSALAHVVSSKSAKELWLSLEK 78
           ++FV+   G  T ++N  +  W+++DQ L+TL+NATLS +AL+HV+   +++E WL+LE+
Sbjct: 95  NKFVQDERGAATAQINPEYQIWNTQDQALMTLLNATLSQTALSHVIGYSTSREAWLALER 154

Query: 79  KHSSKSRSSILELRSALYTVKKSSTESVEQYIRRIKDIVDRLATASIQIDDEEILVHILN 138
           + S+ +RS+IL+L+SAL+ + K   +S++ YI++IK   D LA+ S+ I+DE+IL+++LN
Sbjct: 155 RFSASTRSNILQLKSALHNISKGK-DSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLN 214

Query: 139 GQTSNFNAFRTSIRTRNDTISVKELSVLLEARRKHWRHILLQ---------LIMYQLQCN 198
           G    +NAF+TSIRT+++ I+++E+  +L+   +    +  Q         ++    + N
Sbjct: 215 GLPQEYNAFKTSIRTKSENITLEEVYAMLKIEEQTIESVHKQNNSPPFPGAMMATNYRPN 274

Query: 199 NSSN------------------ISRGGRMY------------------------------ 258
            SSN                   +RGGRM+                              
Sbjct: 275 FSSNRGYSPSNFSGRGRGRGRFSNRGGRMHSFGRFQSPNFGQSNLPYPTKQPQQSNQRSN 334

Query: 259 ------CQICLKPGHGALDCYNRMNFTFQGRHPPAQLVAMAVNAMTPSSSSNTHNNFWLL 318
                 CQIC K GH ALDCY+RM+F++QG+ P  QL AM+    T ++ S+   N+W  
Sbjct: 335 NSHPVVCQICNKNGHSALDCYHRMDFSYQGKPPSPQLTAMSA---TYNTGSDCSPNYWYT 394

Query: 319 DSGCNAHVTNDLANLNLVDSYNGEKSVTVSNVQPLNISHTSSGILSTSSHAFTLSNVLHA 371
           D+G   H+T DLANLN    Y G+ ++T++N Q L+ISH+    +  + H F L+NVL  
Sbjct: 395 DTGATNHITADLANLNFPVEYQGDDNITIANGQALDISHSGQSSIHANDHTFRLNNVLCV 454

[Close]

BLAST of Moc06g39610.1 vs. ExPASy TrEMBL
Match: A0A2N9I8F3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48235 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 5.3e-70
Identity = 170/462 (36.80%), Postives = 254/462 (54.98%), Query Frame = 0


Query: 20  QFVRSATGTITTEVNTAFLQWSSRDQGLITLINATLSPSALAHVVSSKSAKELWLSLEKK 79
           +F+ +A G +TT VN  F  W++RDQGL+ LIN+TLS S L+ VV   SA+E+W +LE +
Sbjct: 43  RFLINADGALTTTVNPEFQLWNTRDQGLLALINSTLSHSVLSMVVGHNSAQEVWKTLEHR 102

Query: 80  HSSKSRSSILELRSALYTVKKSSTESVEQYIRRIKDIVDRLATASIQIDDEEILVHILNG 139
            +S SR+++L L+  L+ +KK S E++  Y++++K+  D+L      ID+EE+L  IL G
Sbjct: 103 FTSTSRANVLNLKIELHNLKKGS-ETISSYLQKVKNTRDKLVAVGTLIDNEELLHIILKG 162

Query: 140 QTSNFNAFRTSIRTRNDTISVKELSVLLEARRKHW---------RHILLQL--------- 199
               +  F ++IRTRN+ ++ +E+ VLL+   +            H +            
Sbjct: 163 LPREYGPFCSAIRTRNEPVTFEEIMVLLQTEEQSASESSDSGKDSHPMAMFASAPNNRTS 222

Query: 200 ----------IMYQLQCNNSSNISRGGRMY---------------------------CQI 259
                       ++ +  N+S   RGGR Y                           CQI
Sbjct: 223 NSQSAFYGNNTQFRGRGRNNSQRGRGGRFYNSNQNQFSQSAQGNSQFPQKPEGSRPQCQI 282

Query: 260 CLKPGHGALDCYNRMNFTFQGRHPPAQLVAMAVNAMTPSSSSNTHNNFWLLDSGCNAHVT 319
           C K GH ALDCY+RM+F +QGRHPPA+L AMA      +S+ +   + WL D+G   H+T
Sbjct: 283 CGKLGHQALDCYHRMDFAYQGRHPPAKLAAMA-----STSNGSQGGDTWLTDTGATDHLT 342

Query: 320 NDLANLNLVDSYNGEKSVTVSNVQPLNISHTSSGILSTSSHAFTLSNVLHAPDLATNLIS 379
            +L NL     Y G + V+V N Q + I+H  +G LST ++ F L N+LH+  +++NL+S
Sbjct: 343 ANLTNLQTAAPYQGTEQVSVGNGQSIPINHIGNGQLSTKNYNFRLKNLLHSSRISSNLLS 402

Query: 380 VHKFCLDNHCIFVFDYDWFLIQDKVTGTTLYKRKSANGLYHI---PSSSTLSSARNELHP 424
           VH  C DN+C   FD + FLIQD  +G  LYK  S NGLY I   PSSS++S +     P
Sbjct: 403 VHTLCKDNNCSCYFDSNKFLIQDLPSGKVLYKGLSKNGLYPIHTLPSSSSMSPSATASPP 462

[Close]

BLAST of Moc06g39610.1 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 3.5e-05
Identity = 53/197 (26.90%), Postives = 88/197 (44.67%), Query Frame = 0


Query: 24  SATGTITTEVNTAFLQWSSRDQGLITL-INATLSPSALAHVVS-SKSAKELWLSLEKKHS 83
           S+T T  TE      +W  RD GL+ + I  T++ S L  ++    +A++LWLSLE    
Sbjct: 56  SSTPTPMTE-----KRWKERD-GLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFR 115

Query: 84  SKSRSSILELRSALYTVKKSSTESVEQYIRRIKDIVDRLATASIQIDDEEILVHILNGQT 143
               +  L+  + L T       SV +Y +++K + D L      I D  +++H+LNG T
Sbjct: 116 DNKEARALQFENELRTTTIDDL-SVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLT 175

Query: 144 SNFNAFRTSIRTRNDTISVKEL--SVLLEARR---------KHWRHILLQLIMY------ 198
             ++     I+ ++   S  E    +L+E  R          H  H  L  +++      
Sbjct: 176 EKYDYILNVIKHKSPFPSFTEARSMLLMEESRLSNKSKSSLSHTNHPSLSNVLFTVPRQQ 235

[Close]

BLAST of Moc06g39610.1 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 2.3e-04
Identity = 34/137 (24.82%), Postives = 66/137 (48.18%), Query Frame = 0


Query: 34  NTAFLQWSSRDQGLITL-INATLSPSAL-AHVVSSKSAKELWLSLEKKHSSKSRSSILEL 93
           N   + W  RD G++ L +  TL+P       V+S +++++WL ++ +  +   +  L L
Sbjct: 59  NANDVNWQKRD-GIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRL 118

Query: 94  RSALYTVKKSSTESVEQYIRRIKDIVDRLATASIQIDDEEILVHILNGQTSNFNAFRTSI 153
            S L T K      V  Y R++K + D L    + + D  +++++LNG    F+     I
Sbjct: 119 DSELRT-KDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVI 178

Query: 154 RTRNDTISVKELSVLLE 169
           + R    S  + + +L+
Sbjct: 179 KHRQPFPSFDDAATMLQ 193

The following BLAST results are available for this feature:

BLAST of Moc06g39610.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158189.1	4.6e-84	88.89	uncharacterized protein LOC111024722 [Momordica charantia]	[more]
KAA8524269.1	1.5e-74	35.74	hypothetical protein F0562_010692 [Nyssa sinensis]	[more]
KAA0067173.1	1.1e-72	43.50	retrotransposon protein [Cucumis melo var. makuwa] >TYK26022.1 retrotransposon p...	[more]
KAA8519786.1	8.4e-70	37.35	hypothetical protein F0562_014124 [Nyssa sinensis]	[more]
KAA8535282.1	1.4e-69	37.35	hypothetical protein F0562_030285 [Nyssa sinensis]	[more]

BLAST of Moc06g39610.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	2.0e-26	25.64	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	5.2e-22	25.85	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Moc06g39610.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DYN6	2.2e-84	88.89	uncharacterized protein LOC111024722 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5J5A1U7	7.2e-75	35.74	Integrase catalytic domain-containing protein OS=Nyssa sinensis OX=561372 GN=F05...	[more]
A0A5A7VGG0	5.2e-73	43.50	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5J4ZPW7	4.1e-70	37.35	Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_0...	[more]
A0A2N9I8F3	5.3e-70	36.80	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48235 PE=3 SV=1	[more]

BLAST of Moc06g39610.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48050.1	3.5e-05	26.90	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]
AT1G34070.1	2.3e-04	24.82	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 40..167 e-value: 2.4E-24 score: 85.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 417..436
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 25..305
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 25..305

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc06g39610	Moc06g39610	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc06g39610.1.exon4	Moc06g39610.1.exon4	exon
Moc06g39610.1.exon3	Moc06g39610.1.exon3	exon
Moc06g39610.1.exon2	Moc06g39610.1.exon2	exon
Moc06g39610.1.exon1	Moc06g39610.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc06g39610.1	cds.Moc06g39610.1_4	CDS
cds.Moc06g39610.1	cds.Moc06g39610.1_3	CDS
cds.Moc06g39610.1	cds.Moc06g39610.1_2	CDS
cds.Moc06g39610.1	cds.Moc06g39610.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc06g39610.1	Moc06g39610.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003676	nucleic acid binding