Sed0018360 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCAACGTGCGACTTGAAGGACATGATCCACTGTGGATTCTTACACCCACCATTTTATATTATATAGGAATGAAGATGCTCTTGACTCGACATCGTTTGTTCTGTTCCACTAGAACCCTCATTTTTTGAGGGTTTTGATGTAAATAGTACATGATGGAGCTCGAGTATAAAGTATGGATTCATTTATCAAGGGCAGAGATCTAGGGTTAGTGTCAATCAATAAGTTCAAACTACTTGTAAGTATATGTTCGGTATAGAAATCGAAAGGATCCACCTGACCAAGTTGCAAATTCAAACGTCAAATTTGATCAAAAGTGTATCACGCGAGAATCCAGTATTTATATGATTCTTTGATAAAAAGAAATCACAAAAAATGGTATGTTGCTGCCATTTTGAAACGATTAAAGATCACCGAAGTAATGTCTAAACCCAATGATTCAAGGCAAGAATACAGGATCCGAAACAAGGAAAAATCTTTTTCAATTGTCTCCATAACTAAACTAGATGAGAATGAAGAATCGAAATAGATTCCGAAAGGAGACAGGCAAAAATCAAGGGGTTCGAGACCACTCAATAAATGAAATGCTTAAGCTTAAGGGTTGTTTTCCGTTGAGTGAGAGTTATCCAACTTGAGTTAGGGGGATAAGAATGAGTTTTTTTTTTTCAAAAAAGAATAAGAAAAAAGTATTTAAATCATAGTCTAATTGATTTAATAATCTATGGATCCATTTGACATTAATTAGAATTCTATACATAACTTTGAATTTCCTCGAGCCGTACGAGGAGAAAACTTCTTATACGGTTCTAGGGGGGGTATTGTTAATTTATATCTATCCCAATGAGCCGTTTATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTTGTAAAGTGGGTTTTTATGATCCGATAAAGAATAAAACCTATTTAAATGTTCCTGCGATTATATATTTCCTTGAAAAGGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGGGTTTTTACGGAACTTCACCTTAATCAATAA ATGGTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCAACCCGTTTATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTTGTAAAGTGGGTTTTTATGATCCGATAAAGAATAAAACCTATTTAAATGTTCCTGCGATTATATATTTCCTTGAAAAGGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGGGTTTTTACGGAACTTCACCTTAATCAATAA ATGGTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCAACCCGTTTATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTTGTAAAGTGGGTTTTTATGATCCGATAAAGAATAAAACCTATTTAAATGTTCCTGCGATTATATATTTCCTTGAAAAGGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGGGTTTTTACGGAACTTCACCTTAATCAATAA MVKLRLKRCGRKQPVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ Homology
BLAST of Sed0018360 vs. NCBI nr
Match: YP_009945400.1 (ribosomal protein S16 [Sechium edule] >QIT04115.1 ribosomal protein S16 [Sechium edule] >QOE55930.1 ribosomal protein S16 [Sechium edule]) HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37 Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0
BLAST of Sed0018360 vs. NCBI nr
Match: QKX48455.1 (ribosomal protein S16 [Luffa acutangula]) HSP 1 Score: 160.6 bits (405), Expect = 5.8e-36 Identity = 80/84 (95.24%), Postives = 81/84 (96.43%), Query Frame = 0
BLAST of Sed0018360 vs. NCBI nr
Match: YP_009744559.1 (ribosomal protein S16 [Potaninia mongolica] >ARC98955.1 ribosomal protein S16 [Potaninia mongolica] >QIF10484.1 ribosomal protein S16 [Potaninia mongolica]) HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35 Identity = 75/83 (90.36%), Postives = 80/83 (96.39%), Query Frame = 0
BLAST of Sed0018360 vs. NCBI nr
Match: YP_009004027.1 (ribosomal protein S16 [Cucumis hystrix] >AHJ61369.1 ribosomal protein S16 [Cucumis hystrix] >AVE15313.1 ribosomal protein S16 [Cucumis sativus var. sativus] >QDK99929.1 ribosomal protein S16 [Siraitia grosvenorii]) HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35 Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 0
BLAST of Sed0018360 vs. NCBI nr
Match: YP_009674373.1 (ribosomal protein S16 [Siraitia grosvenorii] >YP_009751804.1 ribosomal protein S16 [Indofevillea khasiana] >YP_009752141.1 ribosomal protein S16 [Linnaeosicyos amara] >YP_009752225.1 ribosomal protein S16 [Trichosanthes baviensis] >YP_009752309.1 ribosomal protein S16 [Bryonia marmorata] >YP_009752563.1 ribosomal protein S16 [Trichosanthes homophylla] >YP_009752817.1 ribosomal protein S16 [Baijiania yunnanensis] >YP_009753156.1 ribosomal protein S16 [Trichosanthes truncata] >YP_009753240.1 ribosomal protein S16 [Nothoalsomitra suberosa] >YP_009753771.1 ribosomal protein S16 [Trichosanthes pilosa] >YP_010119716.1 ribosomal protein S16 [Hemsleya zhejiangensis] >YP_247581.1 ribosomal protein S16 [Cucumis sativus] >AHM88696.1 ribosomal protein S16 [Lagenaria siceraria] >ALF03283.1 ribosomal protein S16 [Cucumis sativus var. hardwickii] >QIT04032.1 ribosomal protein S16 [Luffa aegyptiaca] >QIT05044.1 ribosomal protein S16 [Trichosanthes kirilowii] >QJD26627.1 ribosomal protein S16 [Trichosanthes rosthornii] >QSQ72292.1 ribosomal protein S16 [Benincasa hispida] >QZL38575.1 ribosomal protein S16 [Citrullus naudinianus] >QZL38663.1 ribosomal protein S16 [Citrullus ecirrhosus]) HSP 1 Score: 159.1 bits (401), Expect = 1.7e-35 Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 0
BLAST of Sed0018360 vs. ExPASy Swiss-Prot
Match: Q2QDA6 (30S ribosomal protein S16, chloroplastic OS=Cucumis sativus OX=3659 GN=rps16 PE=3 SV=1) HSP 1 Score: 158.7 bits (400), Expect = 2.9e-38 Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 0
BLAST of Sed0018360 vs. ExPASy Swiss-Prot
Match: Q2L8Y7 (30S ribosomal protein S16, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps16 PE=3 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 7.8e-36 Identity = 75/84 (89.29%), Postives = 78/84 (92.86%), Query Frame = 0
BLAST of Sed0018360 vs. ExPASy Swiss-Prot
Match: A0ZZ17 (30S ribosomal protein S16, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps16 PE=3 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 2.3e-35 Identity = 74/84 (88.10%), Postives = 77/84 (91.67%), Query Frame = 0
BLAST of Sed0018360 vs. ExPASy Swiss-Prot
Match: Q9MTQ0 (30S ribosomal protein S16, chloroplastic OS=Oenothera elata subsp. hookeri OX=85636 GN=rps16 PE=3 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 1.5e-34 Identity = 71/84 (84.52%), Postives = 77/84 (91.67%), Query Frame = 0
BLAST of Sed0018360 vs. ExPASy Swiss-Prot
Match: Q0ZJ38 (30S ribosomal protein S16, chloroplastic OS=Vitis vinifera OX=29760 GN=rps16 PE=3 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 1.5e-34 Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 0
BLAST of Sed0018360 vs. ExPASy TrEMBL
Match: A0A6H0EQH4 (30S ribosomal protein S16, chloroplastic OS=Sechium edule OX=184140 GN=rps16 PE=3 SV=1) HSP 1 Score: 166.0 bits (419), Expect = 6.6e-38 Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0
BLAST of Sed0018360 vs. ExPASy TrEMBL
Match: A0A7D5CPP0 (30S ribosomal protein S16, chloroplastic OS=Luffa acutangula OX=56866 GN=rps16 PE=3 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 2.8e-36 Identity = 80/84 (95.24%), Postives = 81/84 (96.43%), Query Frame = 0
BLAST of Sed0018360 vs. ExPASy TrEMBL
Match: A0A1V0IR61 (Ribosomal protein S16 OS=Potaninia mongolica OX=393623 GN=rps16 PE=3 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 6.2e-36 Identity = 75/83 (90.36%), Postives = 80/83 (96.39%), Query Frame = 0
BLAST of Sed0018360 vs. ExPASy TrEMBL
Match: W8E1Y8 (Ribosomal protein S16 OS=Cucumis hystrix OX=396994 GN=rps16 PE=3 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 6.2e-36 Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 0
BLAST of Sed0018360 vs. ExPASy TrEMBL
Match: A0A343UM14 (30S ribosomal protein S16, chloroplastic OS=Cucumis sativus var. sativus OX=869827 GN=rps16 PE=3 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 6.2e-36 Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 0
BLAST of Sed0018360 vs. TAIR 10
Match: ATCG00050.1 (ribosomal protein S16 ) HSP 1 Score: 125.2 bits (313), Expect = 2.5e-29 Identity = 62/79 (78.48%), Postives = 69/79 (87.34%), Query Frame = 0
BLAST of Sed0018360 vs. TAIR 10
Match: AT4G34620.1 (small subunit ribosomal protein 16 ) HSP 1 Score: 65.5 bits (158), Expect = 2.4e-11 Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 0
BLAST of Sed0018360 vs. TAIR 10
Match: AT5G56940.1 (Ribosomal protein S16 family protein ) HSP 1 Score: 50.1 bits (118), Expect = 1.0e-06 Identity = 27/81 (33.33%), Postives = 49/81 (60.49%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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