Sed0022457.1 (mRNA) Chayote v1

Overview


Name	Sed0022457.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG09: 30662093 .. 30666430 (-)
Sequence length	717
RNA-Seq Expression	Sed0022457.1
Synteny	Sed0022457.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCGTTTCAGTTTGCTCAAATGATGGAGAACTTAGAAATAGGAGAGCAGGAAAATCAAGGGGTACTCCAACTTGAAGAGGATGATATCTCAGCTTATGAGAGCAAGCTAGAAGGTGTCATAGAGTGCAAGCTTCACACCAAAAAACAAGTAAGTCCCGATGTCTTTAAGAAATTAATTCCTAAGATCTGGAATGCAGAAAACAAGGTTGTTATAGAATCAGTGGGTTTGAATACGTTCATTTGCTCCTTTTCTAATAAGGTTGTGAAAGAGAGAATAGTGGAAGGCAGTCTCTGGATCTATGACGATGCGCTTATTTTGTTTTAAAGTATGTCGGGGGACAAGCGAATTTCTGAGATGGAATTTGGATACTCGACTTTTTGGGTGCGTCTACACGACGTACCACCATCTTGTCACAGAGAAAATAATGCGAGGAAATTAAGGGAGATGATAGGTGGATTCCTTGGTTGGGATAGTGAGGGAGACCAGAGAAACAGGGGAAAATTCTTAAGGATGAAAATTAAGGTGGATATTATGGTGCCTTTGAGAAGAGCCCTAAAATTGAAAATGAGGCCATGGCAGTGGAGAAATGGGCAAGGATTTCTTATGAAAAACTTCCGACAATTTGTAGACGTTGTGGAAGAGTGGGGCATGGAGCATTAGAGTCCAATTTTTTATAATAGGGGAAGGTATGTCGTTCCTGTTTGGGGAGGAATTAAGGGAACCATCAACTTTTTTCAGAGGTGAACGTTTTAGGGATCAAAGGCTAGGGGGAAGAGGCAGAGTGTAAAGACCCGACCCAAAAGGGGTTCTAAATGGGCCTTTACCCCAATGCATGTATTCAAAATAAAAGACATTATGAAAATAAATTTCGGATCCCAAGTAAAAACAGAAACGTTCAACAATCAAAACAATTTACTCTAAAACCTGTACCTGTTTTCAAGCACCTGTTTCAGGATAAATACATTTCTAAAAGCATACTCTGATAAGAGATTTATTTAAACCATTCAAACCTTCCACAAGTACAACTAGGCTGGAATCCATAAAACATAAGAAAACATCCTAGGGCTCCGTGCCCGTCTACATGCATTCAGGGGAAATAACAAAAGTCAAGAGTCATGATATAACAAAATGGTCAGAGATGACAGCAAGGCCCATGATCATAGCCCCTCCTTCAGCCATCCTGTCTCGCTCCTTGGTTACCTGTGGAAACCACGAAATAAGGGTGAGTAACGAGTTACTCAGTAAGAATCCCCAACCGGGGTACAATACGATGCACATGGTCATCCAGATGAGTGTATGCAAGCTATGAATATAAACACAGAAAAGAGCACATAGCTTGAGTCCACACTTGGACCTCGGATGCCAACTCAGGGTCTTAGTTCGGAAATAAATCCACCACACCATACGTCCTATACGAGAAGCAAGTCTCGGCCTCAGCCTGTCTACTGTCGATACGAAAGGTGCACTAGCTCAAGATCCCGAGGAGCTCTCCGGTCGGCCCTGTAATGAGCGTAAGCATGCACCGCGTGCTACTGCAGACTATGGGGTGCCGGGTCTAGTGGCAAGCGCCCATGTCCGATCCACCACGCCTAACTAAATCTCTGGATCGGTGTCACCGACATAGGGTGTGAGACCTGACACGCGAACTATGTCACCAACCACCGCACTGAGGCTAAGGAACCGGTCGTGGTAGGCTTACACCGAAGCGGTCCTTGCCCTAACAGTGGCAATCAAGGGCTACGGCCGAACACGGCGAGGATGTGCCGACTACAGGGGCGAGGCAATGCCAAGTCATCATCCCGACCGTTGGGGCATTTAACAGTCTGCCACCCTCACCCAAGATTGCAGGGCCTACCGGTCGGGTTAGCTAAACCCTAACGGGGTTCAGGGACGGAGAACTGTCTCGACGTCCCTGCCATGGATGCAAGATACTTTATGCATCAGGCCCGGAAGATGCTACCTACGAGAGCTAACACCTGCCTTAACAATCAGCAAACAATCCAATACGTGCTCAAAAGAATACAAAGAGACCTAACATGGTGCTCTGAAACAAGAATGAATGTGAGCATGCGAACGGAACAACCTAGCATGGACTAACATGAAAGAACAACATACGAAGTCATGCCAGTCAGGAATTCAGAACAGAGCACCTAAACTATACATGCTGATAATCACAAACAAACATACAACATCAATCACATAGAACATCGCAGGGTCCACACAACCCCGGTAAGAAATCCTTACCTTGGTCGGAAGACTTCTACACACAAATTTCCTAAGCTGCGAACACTCCCGAGCTAGCTATCGAGAACCTACAAACATAGCAACAATCACAACCATAGTCCTAAAATTATAATAACACAGCAGGCTCGGCTCGGGAGCACTCACACGGCACGACGACACGAGGCTGGGCGTTCTTCTGGCGGTCTGGTGCGGTGGATCGGGCGCTGGGCGGCGCTGGGCGAGCAGCAGGCGCGCGCCTGCTAGCCGACACACTGCTGGGCACGCACGCGCGCGGCGGCGGCGTCTGTGGCGAAGCGGGCGGCGCGAGCGAAGTGCAGCGTCGTGGCGACGAGCGAGCGGCTCGGCGATGGGCTTCCCTCGGCTGCGACCTGGGCGTGAGATGGTGCGACAGCGACAGATCTGGGGCGACGGACCAGGGGAGTGCGACGGCGAGCGAAGCTGCTTCTCGGCCGGATCTGGTGCGGCTGGCTGAGCAATGGCTCGCTGGTGCGTGCGACGGGAGCTGCTCGGGCAGATCTGGGACGCGCGACGGGCGGCGGCGAATCTGGGAGCGGGTTGGGCGTGCTGCGACGAGCCGCGGCGGCGGTGGCGGCGGCTCTGGTCGGCGGCTCGGGCGGATCGGCCACCGGTGGCGAATCGACCTCGATTCTTTGCAACAAACACAAACACACACACATCCTTACCTTCGGCCAGCGAAAACAACCAAACGAGAAGAGGAAGAAGATGAAGACTTACCCGGAATGAAAATCGAGCAACGGAGCGCGAAGGGGGATGAAGAAATCGGCAAGGAGGCTAGGGAGAACTTGGCTTGGGTGGCTAGGAGATGTGTTGGAGAAGAGACAACCTAGCCTTTTTCTTTCCATTTGACCAAAAGCACCAAACACCAAAGATCCAAGGTTAACTAAGATGTGATGCAGAAAGAGCAACAAGAGCACCAAATGGCTCAATTGGCACACATCCCCACAAGTTTTCCAGGAGACCCGGGTTCAAACCCCAGCTCCAGCACAAATTCCTTTATTTTTACTTTTGCATCAAACCTTGCTCAAACCCTTCCACGAAGCCTCACAAACCTAGATAAATCCATCCAATATTTTTAGCAACTAGAAAGGACATAAACGACCCTGACGGCCCGACAAATTACCAAAATACCCCTTGGGCATACCTGGAAGACTGGGATGAAAACCTGGGCCGTTACACAGAGGAAGAGAGAGAGGAACAGGAAATGTCTTCAGGGAAATTGAGGACGAGATTATAGAATGACGGGCAGTTGAAGATAATGCAGAAGGCCGAAGGAAGGAAGATGATCTGAGAAATCGGCAATCTCCGATCGCTACTGGCCGGAGACACACCGGTACAAGTCCGTTGAAGTCTGCATTGGGAAAAGGCTAAGGTTTTCAGCAGACCAACCGTTTCCATCAGAAACTCGGCTCGGTGGCAGGCGAATGGTCAAGTACGGAGAGGGATTTTGGCTTAGAGATTGGCGATTTGACGAGAGAAGACTAGGGGCAGCTGTCGTGTGATCAGAACGGCAGGAAAGTGGAAAAGGATAAAAATAAAGTGATAGATGGAGGGTTGGAGGATCTATTATTTGGGCCATTCGAAATTAGTTTTAAAGCCCATAAAGAGGTTGAACTCTTTTCTAAAAGTGGGCTGGACAGCAAGATTAAAAAAGGGATAATTATAAAGGATCTTGAGGAAAAAAAAGATAGGCTACAATCTTCTAGTGGGCATTATAATTCAGAGCCAATTCAAATTATGGAAAAGGAGAAAAGAATACGAGAAAAGGGAAAAGAAATTGGTATGGGATCTCTGCCGGCATCAAAAGAAGAAAGCAAAGAGGAAATCAGGTCGAAAGTTGAAAATAGGTTTAAAGGAGAAACTATCCCCAATAAGTACCCCAAAAGTGTGGCAGACTCCAACTATGAGAATGAAGGGACTGATATGGAAATTGAGTTAGGAAAAATAGGGGAATTCGAAAGTAAGGCTGTTAAGGGAAGCTGTGCAAAAATTAAAGGACCAACTTCGATTATGAAGTGGAGGAGAAGAGCTCGCTTGGGGGGTGGTGAAGTGGAATCTCAAAGGGTGTAA

mRNA sequence

ATGGATGCGTTTCAGTTTGCTCAAATGATGGAGAACTTAGAAATAGGAGAGCAGGAAAATCAAGGGGTACTCCAACTTGAAGAGGATGATATCTCAGCTTATGAGAGCAAGCTAGAAGGTGTCATAGAGTGCAAGCTTCACACCAAAAAACAAAACGGCAGGAAAGTGGAAAAGGATAAAAATAAAGTGATAGATGGAGGGTTGGAGGATCTATTATTTGGGCCATTCGAAATTAGTTTTAAAGCCCATAAAGAGGTTGAACTCTTTTCTAAAAGTGGGCTGGACAGCAAGATTAAAAAAGGGATAATTATAAAGGATCTTGAGGAAAAAAAAGATAGGCTACAATCTTCTAGTGGGCATTATAATTCAGAGCCAATTCAAATTATGGAAAAGGAGAAAAGAATACGAGAAAAGGGAAAAGAAATTGGTATGGGATCTCTGCCGGCATCAAAAGAAGAAAGCAAAGAGGAAATCAGGTCGAAAGTTGAAAATAGGTTTAAAGGAGAAACTATCCCCAATAAGTACCCCAAAAGTGTGGCAGACTCCAACTATGAGAATGAAGGGACTGATATGGAAATTGAGTTAGGAAAAATAGGGGAATTCGAAAGTAAGGCTGTTAAGGGAAGCTGTGCAAAAATTAAAGGACCAACTTCGATTATGAAGTGGAGGAGAAGAGCTCGCTTGGGGGGTGGTGAAGTGGAATCTCAAAGGGTGTAA

Coding sequence (CDS)

ATGGATGCGTTTCAGTTTGCTCAAATGATGGAGAACTTAGAAATAGGAGAGCAGGAAAATCAAGGGGTACTCCAACTTGAAGAGGATGATATCTCAGCTTATGAGAGCAAGCTAGAAGGTGTCATAGAGTGCAAGCTTCACACCAAAAAACAAAACGGCAGGAAAGTGGAAAAGGATAAAAATAAAGTGATAGATGGAGGGTTGGAGGATCTATTATTTGGGCCATTCGAAATTAGTTTTAAAGCCCATAAAGAGGTTGAACTCTTTTCTAAAAGTGGGCTGGACAGCAAGATTAAAAAAGGGATAATTATAAAGGATCTTGAGGAAAAAAAAGATAGGCTACAATCTTCTAGTGGGCATTATAATTCAGAGCCAATTCAAATTATGGAAAAGGAGAAAAGAATACGAGAAAAGGGAAAAGAAATTGGTATGGGATCTCTGCCGGCATCAAAAGAAGAAAGCAAAGAGGAAATCAGGTCGAAAGTTGAAAATAGGTTTAAAGGAGAAACTATCCCCAATAAGTACCCCAAAAGTGTGGCAGACTCCAACTATGAGAATGAAGGGACTGATATGGAAATTGAGTTAGGAAAAATAGGGGAATTCGAAAGTAAGGCTGTTAAGGGAAGCTGTGCAAAAATTAAAGGACCAACTTCGATTATGAAGTGGAGGAGAAGAGCTCGCTTGGGGGGTGGTGAAGTGGAATCTCAAAGGGTGTAA

Protein sequence

MDAFQFAQMMENLEIGEQENQGVLQLEEDDISAYESKLEGVIECKLHTKKQNGRKVEKDKNKVIDGGLEDLLFGPFEISFKAHKEVELFSKSGLDSKIKKGIIIKDLEEKKDRLQSSSGHYNSEPIQIMEKEKRIREKGKEIGMGSLPASKEESKEEIRSKVENRFKGETIPNKYPKSVADSNYENEGTDMEIELGKIGEFESKAVKGSCAKIKGPTSIMKWRRRARLGGGEVESQRV

Homology

The following BLAST results are available for this feature:

BLAST of Sed0022457.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0022457.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0022457.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0022457.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 104..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..170

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0022457	Sed0022457	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022457.1-exon	Sed0022457.1-exon-LG09:30662093..30662656	exon
Sed0022457.1-exon	Sed0022457.1-exon-LG09:30666278..30666430	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022457.1-cds	Sed0022457.1-cds-LG09:30662093..30662656	CDS
Sed0022457.1-cds	Sed0022457.1-cds-LG09:30666278..30666430	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0022457.1	Sed0022457.1-protein	polypeptide