Sed0019097 (gene) Chayote v1

Overview


Name	Sed0019097
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Retrotransposon protein
Location	LG09: 29316913 .. 29318224 (+)
RNA-Seq Expression	Sed0019097
Synteny	Sed0019097

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCTGATAAAACTATAGCAGTTTTAACAATACTCTACACATGGCAGAACCAGTTTCTTCTTCTTGCGAATCTTGTAATGAACTACAACCCTAGGACAAAAAACTATAGCTCTTTCTTTAGACACCATTTTCGCCAAATGACCTTTTTCTCGATGATAAGACAAAGCGATTTAGCTTGTCGTGAGACAACTAGAATGAATCGTAGCTGCTTTGAAACTTTGTGCGACATGCTAAGGACCCACAGTGGTCTTCGAGGTACAGATTACATCGACGTGGAGGAAATGGTAGCCATGTTTCTACATATCTTGGCTCATGATGTTAAGAACCGTGTCGTTCGAAGAATATTTACAAGATCCGGCGAAACAGTGTCGCGACACTTTCAATCTATCCTTACTGCTGTTATTCGTTGTCATGACATTTTGTACAAGAAACTTGAACCTATCCAACCATCATGCGCCGATAGTAGATGGAAGTGGTTTGAGGTACCATTATTTTACCTTTATAAAATAGAGTTCTTGTAGGAACCGAATTTCATTTCTTCCTTCGAACTATGCAGAATTGTCTAGGTGCATTAGATGGTACTCATATAGAGTTACAAGTCCCAGTTGAAAATCGTGCCTCCTTTAGAAATAGGAAGGGTATCATCACAACGAATGTTCTTGTTGTATGCGCTCCAAGCGGAGAGTTCATATACGTACTAGCTGGGTGGGAGGGATCAGCAGCTGACTCTAGAGTTCTTAGGGATGTTTTATCCCGTAACAATGGATTTCAAGTCTCTCATGGTAATTAAGGACTAAAAGAAAATGCTACTTTCACTTATAGTGAATGTATAATAACCTAGTGCTTATTGATCCAGGATACTATTACCTTTGTGATGCGGGTTATCCAAATGTTGATGGGTTCTTAGCTCCCTATAGAGGCGAACGTTATCATCTATCGGATTGGAGGGGTAGCAATCCACCACGGAATCCGGGAGAGTTTTTTAATAAAGCACACTCCTCGGCACGAAATATAATAGAAAGAGCATTCGGTGCATTAAAAAACCGCTGGACTATTCTGCGGCGCAAGTCTTTCTATCCTCTGAAAGTACAAGTGAAGATCATAACAGCTTGTTGTCTCCTACATAATTTAATATGTAGGGAGATGGGCTCTACGATTGGTTTAGAGATATTAGGGGAAAACGATGCCACACTCTACCAAGAAGAAATGGATGATACCCCGACGATTAATTTCGTCGAGACATCGCCTCTTTGGACCACATTTCGAGATTTCATGGCCCAAAGAATGTTTGACGCAACCCAAAACTAG

mRNA sequence

ATGGATCCTGATAAAACTATAGCAGTTTTAACAATACTCTACACATGGCAGAACCAGTTTCTTCTTCTTGCGAATCTTGTAATGAACTACAACCCTAGGACAAAAAACTATAGCTCTTTCTTTAGACACCATTTTCGCCAAATGACCTTTTTCTCGATGATAAGACAAAGCGATTTAGCTTGTCGTGAGACAACTAGAATGAATCGTAGCTGCTTTGAAACTTTGTGCGACATGCTAAGGACCCACAGTGGTCTTCGAGGTACAGATTACATCGACGTGGAGGAAATGGTAGCCATGTTTCTACATATCTTGGCTCATGATGTTAAGAACCGTGTCGTTCGAAGAATATTTACAAGATCCGGCGAAACAGTGTCGCGACACTTTCAATCTATCCTTACTGCTGTTATTCGTTGTCATGACATTTTGTACAAGAAACTTGAACCTATCCAACCATCATGCGCCGATAGTAGATGGAAGTGGTTTGAGAATTGTCTAGGTGCATTAGATGGTACTCATATAGAGTTACAAGTCCCAGTTGAAAATCGTGCCTCCTTTAGAAATAGGAAGGGTATCATCACAACGAATGTTCTTGTTGTATGCGCTCCAAGCGGAGAGTTCATATACGTACTAGCTGGGTGGGAGGGATCAGCAGCTGACTCTAGAGTTCTTAGGGATGTTTTATCCCGTAACAATGGATTTCAAGTCTCTCATGGATACTATTACCTTTGTGATGCGGGTTATCCAAATGTTGATGGGTTCTTAGCTCCCTATAGAGGCGAACGTTATCATCTATCGGATTGGAGGGGTAGCAATCCACCACGGAATCCGGGAGAGTTTTTTAATAAAGCACACTCCTCGGCACGAAATATAATAGAAAGAGCATTCGGTGCATTAAAAAACCGCTGGACTATTCTGCGGCGCAAGTCTTTCTATCCTCTGAAAGTACAAGTGAAGATCATAACAGCTTGTTGTCTCCTACATAATTTAATATGTAGGGAGATGGGCTCTACGATTGGTTTAGAGATATTAGGGGAAAACGATGCCACACTCTACCAAGAAGAAATGGATGATACCCCGACGATTAATTTCGTCGAGACATCGCCTCTTTGGACCACATTTCGAGATTTCATGGCCCAAAGAATGTTTGACGCAACCCAAAACTAG

Coding sequence (CDS)

ATGGATCCTGATAAAACTATAGCAGTTTTAACAATACTCTACACATGGCAGAACCAGTTTCTTCTTCTTGCGAATCTTGTAATGAACTACAACCCTAGGACAAAAAACTATAGCTCTTTCTTTAGACACCATTTTCGCCAAATGACCTTTTTCTCGATGATAAGACAAAGCGATTTAGCTTGTCGTGAGACAACTAGAATGAATCGTAGCTGCTTTGAAACTTTGTGCGACATGCTAAGGACCCACAGTGGTCTTCGAGGTACAGATTACATCGACGTGGAGGAAATGGTAGCCATGTTTCTACATATCTTGGCTCATGATGTTAAGAACCGTGTCGTTCGAAGAATATTTACAAGATCCGGCGAAACAGTGTCGCGACACTTTCAATCTATCCTTACTGCTGTTATTCGTTGTCATGACATTTTGTACAAGAAACTTGAACCTATCCAACCATCATGCGCCGATAGTAGATGGAAGTGGTTTGAGAATTGTCTAGGTGCATTAGATGGTACTCATATAGAGTTACAAGTCCCAGTTGAAAATCGTGCCTCCTTTAGAAATAGGAAGGGTATCATCACAACGAATGTTCTTGTTGTATGCGCTCCAAGCGGAGAGTTCATATACGTACTAGCTGGGTGGGAGGGATCAGCAGCTGACTCTAGAGTTCTTAGGGATGTTTTATCCCGTAACAATGGATTTCAAGTCTCTCATGGATACTATTACCTTTGTGATGCGGGTTATCCAAATGTTGATGGGTTCTTAGCTCCCTATAGAGGCGAACGTTATCATCTATCGGATTGGAGGGGTAGCAATCCACCACGGAATCCGGGAGAGTTTTTTAATAAAGCACACTCCTCGGCACGAAATATAATAGAAAGAGCATTCGGTGCATTAAAAAACCGCTGGACTATTCTGCGGCGCAAGTCTTTCTATCCTCTGAAAGTACAAGTGAAGATCATAACAGCTTGTTGTCTCCTACATAATTTAATATGTAGGGAGATGGGCTCTACGATTGGTTTAGAGATATTAGGGGAAAACGATGCCACACTCTACCAAGAAGAAATGGATGATACCCCGACGATTAATTTCGTCGAGACATCGCCTCTTTGGACCACATTTCGAGATTTCATGGCCCAAAGAATGTTTGACGCAACCCAAAACTAG

Protein sequence

MDPDKTIAVLTILYTWQNQFLLLANLVMNYNPRTKNYSSFFRHHFRQMTFFSMIRQSDLACRETTRMNRSCFETLCDMLRTHSGLRGTDYIDVEEMVAMFLHILAHDVKNRVVRRIFTRSGETVSRHFQSILTAVIRCHDILYKKLEPIQPSCADSRWKWFENCLGALDGTHIELQVPVENRASFRNRKGIITTNVLVVCAPSGEFIYVLAGWEGSAADSRVLRDVLSRNNGFQVSHGYYYLCDAGYPNVDGFLAPYRGERYHLSDWRGSNPPRNPGEFFNKAHSSARNIIERAFGALKNRWTILRRKSFYPLKVQVKIITACCLLHNLICREMGSTIGLEILGENDATLYQEEMDDTPTINFVETSPLWTTFRDFMAQRMFDATQN

Homology

[Close]

BLAST of Sed0019097 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 443.7 bits (1140), Expect = 1.6e-120
Identity = 218/383 (56.92%), Postives = 270/383 (70.50%), Query Frame = 0


Query: 1   MDPDKTIAVLTILYTWQNQFLLLANLVMNYNPRTKNYSSFFRHHFRQMTFFSMIRQSDLA 60
           MD  +  +++      Q Q LL+  L+ N   R  +     RH  RQ+ +F MI  SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 61  CRETTRMNRSCFETLCDMLRTHSGLRGTDYIDVEEMVAMFLHILAHDVKNRVVRRIFTRS 120
           CR++TRM+R CF  LC +LRT +GL  T+ +DVEEMVAMFLHILAHDVKNRV++R F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 121 GETVSRHFQSILTAVIRCHDILYKKLEPIQPSCADSRWKWFENCLGALDGTHIELQVPVE 180
           GET+SRHF  +L AVIR HD L KK +P+   C D RW+WFENCLGALDGT+I++ VP  
Sbjct: 121 GETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 181 NRASFRNRKGIITTNVLVVCAPSGEFIYVLAGWEGSAADSRVLRDVLSRNNGFQVSHGYY 240
           +RA +R RKG + TNVL VC   G+F+YVLAGWEGSAADSR+LRD LSR N  +V  GYY
Sbjct: 181 DRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYY 240

Query: 241 YLCDAGYPNVDGFLAPYRGERYHLSDWRG-SNPPRNPGEFFNKAHSSARNIIERAFGALK 300
           YL DAGYPN +GFLAPYRG+RYHL +WRG  N P    EFFN  HSSARN+IERAFG LK
Sbjct: 241 YLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLK 300

Query: 301 NRWTILRRKSFYPLKVQVKIITACCLLHNLICREMGSTIGLEILGENDATLYQEEMDDTP 360
            RW ILR KS+YP++VQ + I ACCLLHNLI REM +    + + E D+T      DD  
Sbjct: 301 GRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADD-- 360

Query: 361 TINFVETSPLWTTFRDFMAQRMF 383
            I+++ETS  W+ +RD +A+ MF
Sbjct: 361 -IHYIETSNEWSQWRDNLAEEMF 380

[Close]

BLAST of Sed0019097 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 442.2 bits (1136), Expect = 4.6e-120
Identity = 217/383 (56.66%), Postives = 270/383 (70.50%), Query Frame = 0


Query: 1   MDPDKTIAVLTILYTWQNQFLLLANLVMNYNPRTKNYSSFFRHHFRQMTFFSMIRQSDLA 60
           MD  +  +++      Q Q LL+  L+ N   R  +     RH  RQ+ +F MI  SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 61  CRETTRMNRSCFETLCDMLRTHSGLRGTDYIDVEEMVAMFLHILAHDVKNRVVRRIFTRS 120
           CR++TRM+R CF  LC +LRT +GL  T+ +DVEEMVAMFLHILAHDVKNRV++R F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 121 GETVSRHFQSILTAVIRCHDILYKKLEPIQPSCADSRWKWFENCLGALDGTHIELQVPVE 180
           GET+SRHF  +L AVIR H+ L KK +P+   C D RW+WFENCLGALDGT+I++ VP  
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 181 NRASFRNRKGIITTNVLVVCAPSGEFIYVLAGWEGSAADSRVLRDVLSRNNGFQVSHGYY 240
           +RA +R RKG + TNVL VC   G+F+YVLAGWEGSAADSR+LRD LSR N  +V  GYY
Sbjct: 181 DRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYY 240

Query: 241 YLCDAGYPNVDGFLAPYRGERYHLSDWRG-SNPPRNPGEFFNKAHSSARNIIERAFGALK 300
           YL DAGYPN +GFLAPYRG+RYHL +WRG  N P    EFFN  HSSARN+IERAFG LK
Sbjct: 241 YLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLK 300

Query: 301 NRWTILRRKSFYPLKVQVKIITACCLLHNLICREMGSTIGLEILGENDATLYQEEMDDTP 360
            RW ILR KS+YP++VQ + I ACCLLHNLI REM +    + + E D+T      DD  
Sbjct: 301 GRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADD-- 360

Query: 361 TINFVETSPLWTTFRDFMAQRMF 383
            I+++ETS  W+ +RD +A+ MF
Sbjct: 361 -IHYIETSNEWSQWRDNLAEEMF 380

[Close]

BLAST of Sed0019097 vs. NCBI nr
Match: KAA0047510.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 438.7 bits (1127), Expect = 5.1e-119
Identity = 216/383 (56.40%), Postives = 268/383 (69.97%), Query Frame = 0


Query: 1   MDPDKTIAVLTILYTWQNQFLLLANLVMNYNPRTKNYSSFFRHHFRQMTFFSMIRQSDLA 60
           MD  +  +++      Q Q LL+  L+ N   R  +     RH  RQ+ +F MI  SDL 
Sbjct: 1   MDEQELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 61  CRETTRMNRSCFETLCDMLRTHSGLRGTDYIDVEEMVAMFLHILAHDVKNRVVRRIFTRS 120
           CRE+TRM+R CF  LC +LRT +GL  T+ +DVEEMVAMFLHILAHDVKNRV++R F RS
Sbjct: 61  CRESTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 121 GETVSRHFQSILTAVIRCHDILYKKLEPIQPSCADSRWKWFENCLGALDGTHIELQVPVE 180
           GET+S HF  +L AVIR H+ L KK +P+   C D RW+WFENCLGALDGT+I++ VP  
Sbjct: 121 GETISCHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 181 NRASFRNRKGIITTNVLVVCAPSGEFIYVLAGWEGSAADSRVLRDVLSRNNGFQVSHGYY 240
           +RA +R RKG + TNVL VC   G+F+YVLAGWEGSAADSR+LRD LSR NG +V  GYY
Sbjct: 181 DRARYRTRKGEVATNVLGVCDRKGDFVYVLAGWEGSAADSRILRDALSRPNGLKVPKGYY 240

Query: 241 YLCDAGYPNVDGFLAPYRGERYHLSDWRG-SNPPRNPGEFFNKAHSSARNIIERAFGALK 300
           YL DAGYPN +GFLAPYRG+RYHL +W G  N P    EFFN  H SARN+IERAFG LK
Sbjct: 241 YLVDAGYPNPEGFLAPYRGQRYHLQEWHGPENAPSTSKEFFNMKHPSARNVIERAFGVLK 300

Query: 301 NRWTILRRKSFYPLKVQVKIITACCLLHNLICREMGSTIGLEILGENDATLYQEEMDDTP 360
            RW ILR KS+YP++VQ + I ACCLLHNLI REM +    + + E D+T      DD  
Sbjct: 301 GRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADD-- 360

Query: 361 TINFVETSPLWTTFRDFMAQRMF 383
            I+++ETS  W+ +RD +A+ MF
Sbjct: 361 -IHYIETSNEWSQWRDDLAEEMF 380

[Close]

BLAST of Sed0019097 vs. NCBI nr
Match: KAA0048361.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 438.0 bits (1125), Expect = 8.7e-119
Identity = 216/383 (56.40%), Postives = 268/383 (69.97%), Query Frame = 0


Query: 1   MDPDKTIAVLTILYTWQNQFLLLANLVMNYNPRTKNYSSFFRHHFRQMTFFSMIRQSDLA 60
           MD  +  +++      Q Q LL+  L+ N   R  +     RH  RQ+ +F MI  SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 61  CRETTRMNRSCFETLCDMLRTHSGLRGTDYIDVEEMVAMFLHILAHDVKNRVVRRIFTRS 120
           CR++TRM+R CF  LC +LRT +GL  T+ +DVEEMVAMFLHILAHDVKNRV++R F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 121 GETVSRHFQSILTAVIRCHDILYKKLEPIQPSCADSRWKWFENCLGALDGTHIELQVPVE 180
           GET+SRHF  +L AVIR H+ L KK +P+   C D RWKWFENCLGALDGT+I++ VP  
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFENCLGALDGTYIKVNVPAS 180

Query: 181 NRASFRNRKGIITTNVLVVCAPSGEFIYVLAGWEGSAADSRVLRDVLSRNNGFQVSHGYY 240
           +RA +R RKG + TNVL VC   G+F+YVLAGWEG AADSR+LRD LSR N  +V  GYY
Sbjct: 181 DRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGLAADSRILRDALSRPNRLKVPKGYY 240

Query: 241 YLCDAGYPNVDGFLAPYRGERYHLSDWRG-SNPPRNPGEFFNKAHSSARNIIERAFGALK 300
           YL DAGY N +GFLAPYRG+RYHL +WRG  N P    EFFN  HSSARN+IERAFG LK
Sbjct: 241 YLVDAGYQNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLK 300

Query: 301 NRWTILRRKSFYPLKVQVKIITACCLLHNLICREMGSTIGLEILGENDATLYQEEMDDTP 360
            RW ILR KS+YP++VQ + I ACCLLHNLI REM +    + + E D+T      DD  
Sbjct: 301 GRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADD-- 360

Query: 361 TINFVETSPLWTTFRDFMAQRMF 383
            I+++ETS  W+ +RD +A+ MF
Sbjct: 361 -IHYIETSNEWSQWRDNLAEEMF 380

[Close]

BLAST of Sed0019097 vs. NCBI nr
Match: KAA0051057.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 436.4 bits (1121), Expect = 2.5e-118
Identity = 214/383 (55.87%), Postives = 267/383 (69.71%), Query Frame = 0


Query: 1   MDPDKTIAVLTILYTWQNQFLLLANLVMNYNPRTKNYSSFFRHHFRQMTFFSMIRQSDLA 60
           MD  +  +++      Q Q LL+  L+ N   R  +     RH  RQ+ +F MI  SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 61  CRETTRMNRSCFETLCDMLRTHSGLRGTDYIDVEEMVAMFLHILAHDVKNRVVRRIFTRS 120
           C ++TRM+R CF  LC +LRT +GL  T+ +DVEEMVAMFLHIL HDVKNRV++R F RS
Sbjct: 61  CHQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILVHDVKNRVIQREFMRS 120

Query: 121 GETVSRHFQSILTAVIRCHDILYKKLEPIQPSCADSRWKWFENCLGALDGTHIELQVPVE 180
           GET+SRHF  +L AVIR H+ L KK +P+   C D RW+WFENCLGALDGT+I++ VP  
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 181 NRASFRNRKGIITTNVLVVCAPSGEFIYVLAGWEGSAADSRVLRDVLSRNNGFQVSHGYY 240
           +RA +R RKG + TNVL VC   G+F+YVLAGWEGSAADSR+LRD LSR N  +V  GYY
Sbjct: 181 DRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYY 240

Query: 241 YLCDAGYPNVDGFLAPYRGERYHLSDWRG-SNPPRNPGEFFNKAHSSARNIIERAFGALK 300
           YL DAGYPN +GFLAPYRG+RYHL +WRG  N P    EFFN  HS ARN+IERAFG LK
Sbjct: 241 YLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSFARNVIERAFGVLK 300

Query: 301 NRWTILRRKSFYPLKVQVKIITACCLLHNLICREMGSTIGLEILGENDATLYQEEMDDTP 360
            RW ILR KS+YP++VQ + I ACCLLHNLI REM +    + + E D+T      DD  
Sbjct: 301 GRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTTADD-- 360

Query: 361 TINFVETSPLWTTFRDFMAQRMF 383
            I+++ETS  W+ +RD +A+ MF
Sbjct: 361 -IHYIETSNEWSQWRDNLAEEMF 380

[Close]

BLAST of Sed0019097 vs. ExPASy Swiss-Prot
Match: Q9M2U3 (Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.9e-17
Identity = 84/322 (26.09%), Postives = 135/322 (41.93%), Query Frame = 0


Query: 66  RMNRSCFETLCDMLRTHSGLRGTDYID-------VEEMVAMFLHILAHDVKNRVVRRIFT 125
           +++R  F+ +C +++     +  ++ D       + + VA+ L  L       V+   F 
Sbjct: 77  KISRKTFDYICSLVKADFTAKPANFSDSNGNPLSLNDRVAVALRRLGSGESLSVIGETFG 136

Query: 126 RSGETVS----RHFQSILTAVIRCHDILYKKLEPIQPSCADSRWKWFENCLGALDGTHIE 185
            +  TVS    R  +S+    I  H     KL+ I+      +     NC GA+D THI 
Sbjct: 137 MNQSTVSQITWRFVESMEERAIH-HLSWPSKLDEIKSKF--EKISGLPNCCGAIDITHIV 196

Query: 186 LQVPV---ENRASFRNRKGIITTNVLVVCAPSGEFIYVLAGWEGSAADSRVLRDVLSRNN 245
           + +P     N+      K    T +  V  P   F+ V+AGW GS  D     DV+ +N+
Sbjct: 197 MNLPAVEPSNKVWLDGEKNFSMT-LQAVVDPDMRFLDVIAGWPGSLND-----DVVLKNS 256

Query: 246 GFQ--VSHG-----------------YYYLCDAGYPNVDGFLAPYRGERYHLSDWRGSNP 305
           GF   V  G                  Y + D+G+P +   L PY+G+           P
Sbjct: 257 GFYKLVEKGKRLNGEKLPLSERTELREYIVGDSGFPLLPWLLTPYQGK-----------P 316

Query: 306 PRNPGEFFNKAHSSARNIIERAFGALKNRWTILRRKSFYPLKVQV-KIITACCLLHNLIC 354
              P   FNK HS A    + A   LK+RW I+    + P + ++ +II  CCLLHN+I 
Sbjct: 317 TSLPQTEFNKRHSEATKAAQMALSKLKDRWRIINGVMWMPDRNRLPRIIFVCCLLHNIII 376

[Close]

BLAST of Sed0019097 vs. ExPASy Swiss-Prot
Match: Q96MB7 (Putative nuclease HARBI1 OS=Homo sapiens OX=9606 GN=HARBI1 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.3e-11
Identity = 50/170 (29.41%), Postives = 79/170 (46.47%), Query Frame = 0


Query: 165 LGALDGTHIELQVPVENRASFRNRKGIITTNVLVVCAPSGEFIYVLAGWEGSAADSRVL- 224
           +G +D  H+ ++ P     S+ NRKG+ + N L+VC   G  + V   W GS  D  VL 
Sbjct: 145 MGVVDCIHVAIKAPNAEDLSYVNRKGLHSLNCLMVCDIRGTLMTVETNWPGSLQDCAVLQ 204

Query: 225 RDVLSRNNGFQVSHGYYYLCDAGYPNVDGFLAPYRGERYHLSDWRGSNPPRNPGEF-FNK 284
           +  LS      +    + L D+ +     FL  +     H+        P  P E+ +N 
Sbjct: 205 QSSLSSQFEAGMHKDSWLLGDSSF-----FLRTWLMTPLHI--------PETPAEYRYNM 264

Query: 285 AHSSARNIIERAFGALKNRWTIL---RRKSFYPLKVQVKIITACCLLHNL 330
           AHS+  ++IE+ F  L +R+  L   +    Y  +    II ACC+LHN+
Sbjct: 265 AHSATHSVIEKTFRTLCSRFRCLDGSKGALQYSPEKSSHIILACCVLHNI 301

[Close]

BLAST of Sed0019097 vs. ExPASy Swiss-Prot
Match: B0BN95 (Putative nuclease HARBI1 OS=Rattus norvegicus OX=10116 GN=Harbi1 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-10
Identity = 51/170 (30.00%), Postives = 79/170 (46.47%), Query Frame = 0


Query: 165 LGALDGTHIELQVPVENRASFRNRKGIITTNVLVVCAPSGEFIYVLAGWEGSAADSRVL- 224
           +GA+D  H+ ++ P     S+ NRKG+ + N LVVC   G  + V   W GS  D  VL 
Sbjct: 145 IGAVDCIHVAIKAPNAEDLSYVNRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQ 204

Query: 225 RDVLSRNNGFQVSHGYYYLCDAGYPNVDGFLAPYRGERYHLSDWRGSNPPRNPGEF-FNK 284
           +  LS      +    + L D+ +     FL  +     H+        P  P E+ +N+
Sbjct: 205 QSSLSSQFETGMPKDSWLLGDSSF-----FLHTWLLTPLHI--------PETPAEYRYNR 264

Query: 285 AHSSARNIIERAFGALKNRWTIL---RRKSFYPLKVQVKIITACCLLHNL 330
           AHS+  ++IE+    L  R+  L   +    Y  +    II ACC+LHN+
Sbjct: 265 AHSATHSVIEKTLRTLCCRFRCLDGSKGALQYSPEKSSHIILACCVLHNI 301

[Close]

BLAST of Sed0019097 vs. ExPASy Swiss-Prot
Match: Q17QR8 (Putative nuclease HARBI1 OS=Bos taurus OX=9913 GN=HARBI1 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-10
Identity = 50/170 (29.41%), Postives = 79/170 (46.47%), Query Frame = 0


Query: 165 LGALDGTHIELQVPVENRASFRNRKGIITTNVLVVCAPSGEFIYVLAGWEGSAADSRVL- 224
           +G +D  H+ ++ P     S+ NRKG+ + N L+VC   G  + V   W GS  D  VL 
Sbjct: 145 IGVVDCMHVAIKAPNAEDLSYVNRKGLHSLNCLMVCDIRGALMTVETSWPGSLQDCVVLQ 204

Query: 225 RDVLSRNNGFQVSHGYYYLCDAGYPNVDGFLAPYRGERYHLSDWRGSNPPRNPGEF-FNK 284
           +  LS      +    + L D+ +     FL  +     H+        P  P E+ +N 
Sbjct: 205 QSSLSSQFEAGMHKESWLLGDSSF-----FLRTWLMTPLHI--------PETPAEYRYNM 264

Query: 285 AHSSARNIIERAFGALKNRWTIL---RRKSFYPLKVQVKIITACCLLHNL 330
           AHS+  ++IE+ F  L +R+  L   +    Y  +    II ACC+LHN+
Sbjct: 265 AHSATHSVIEKTFRTLCSRFRCLDGSKGALQYSPEKSSHIILACCVLHNI 301

[Close]

BLAST of Sed0019097 vs. ExPASy Swiss-Prot
Match: Q6AZB8 (Putative nuclease HARBI1 OS=Danio rerio OX=7955 GN=harbi1 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.1e-10
Identity = 50/174 (28.74%), Postives = 81/174 (46.55%), Query Frame = 0


Query: 163 NCLGALDGTHIELQVPVENRASFRNRKGIITTNVLVVCAPSGEFIYVLAGWEGSAADSRV 222
           N  G +D  HI ++ P  + +S+ N+KG  + N  +VC   G  +     W GS  D   
Sbjct: 143 NVTGVVDCAHIAIKAPNADDSSYVNKKGFHSINCQLVCDARGLLLSAETHWPGSLTD--- 202

Query: 223 LRDVLSRNNGFQVSHGYYYLCDAGYPNVDGFLAPYRGERYHLSDWRGS--NPPRNPGEF- 282
            R V  ++N  +       L +    + +G+L      RY L  W  +    P +P ++ 
Sbjct: 203 -RAVFKQSNVAK-------LFEEQENDDEGWL--LGDNRYPLKKWLMTPVQSPESPADYR 262

Query: 283 FNKAHSSARNIIERAFGALKNRWTILRRKSFY----PLKVQVKIITACCLLHNL 330
           +N AH++   I++R F A++ R+  L     Y    P K    II ACC+LHN+
Sbjct: 263 YNLAHTTTHEIVDRTFRAIQTRFRCLDGAKGYLQYSPEKCS-HIIQACCVLHNI 302

[Close]

BLAST of Sed0019097 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 7.7e-121
Identity = 218/383 (56.92%), Postives = 270/383 (70.50%), Query Frame = 0


Query: 1   MDPDKTIAVLTILYTWQNQFLLLANLVMNYNPRTKNYSSFFRHHFRQMTFFSMIRQSDLA 60
           MD  +  +++      Q Q LL+  L+ N   R  +     RH  RQ+ +F MI  SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 61  CRETTRMNRSCFETLCDMLRTHSGLRGTDYIDVEEMVAMFLHILAHDVKNRVVRRIFTRS 120
           CR++TRM+R CF  LC +LRT +GL  T+ +DVEEMVAMFLHILAHDVKNRV++R F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 121 GETVSRHFQSILTAVIRCHDILYKKLEPIQPSCADSRWKWFENCLGALDGTHIELQVPVE 180
           GET+SRHF  +L AVIR HD L KK +P+   C D RW+WFENCLGALDGT+I++ VP  
Sbjct: 121 GETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 181 NRASFRNRKGIITTNVLVVCAPSGEFIYVLAGWEGSAADSRVLRDVLSRNNGFQVSHGYY 240
           +RA +R RKG + TNVL VC   G+F+YVLAGWEGSAADSR+LRD LSR N  +V  GYY
Sbjct: 181 DRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYY 240

Query: 241 YLCDAGYPNVDGFLAPYRGERYHLSDWRG-SNPPRNPGEFFNKAHSSARNIIERAFGALK 300
           YL DAGYPN +GFLAPYRG+RYHL +WRG  N P    EFFN  HSSARN+IERAFG LK
Sbjct: 241 YLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLK 300

Query: 301 NRWTILRRKSFYPLKVQVKIITACCLLHNLICREMGSTIGLEILGENDATLYQEEMDDTP 360
            RW ILR KS+YP++VQ + I ACCLLHNLI REM +    + + E D+T      DD  
Sbjct: 301 GRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADD-- 360

Query: 361 TINFVETSPLWTTFRDFMAQRMF 383
            I+++ETS  W+ +RD +A+ MF
Sbjct: 361 -IHYIETSNEWSQWRDNLAEEMF 380

[Close]

BLAST of Sed0019097 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 2.2e-120
Identity = 217/383 (56.66%), Postives = 270/383 (70.50%), Query Frame = 0


Query: 1   MDPDKTIAVLTILYTWQNQFLLLANLVMNYNPRTKNYSSFFRHHFRQMTFFSMIRQSDLA 60
           MD  +  +++      Q Q LL+  L+ N   R  +     RH  RQ+ +F MI  SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 61  CRETTRMNRSCFETLCDMLRTHSGLRGTDYIDVEEMVAMFLHILAHDVKNRVVRRIFTRS 120
           CR++TRM+R CF  LC +LRT +GL  T+ +DVEEMVAMFLHILAHDVKNRV++R F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 121 GETVSRHFQSILTAVIRCHDILYKKLEPIQPSCADSRWKWFENCLGALDGTHIELQVPVE 180
           GET+SRHF  +L AVIR H+ L KK +P+   C D RW+WFENCLGALDGT+I++ VP  
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 181 NRASFRNRKGIITTNVLVVCAPSGEFIYVLAGWEGSAADSRVLRDVLSRNNGFQVSHGYY 240
           +RA +R RKG + TNVL VC   G+F+YVLAGWEGSAADSR+LRD LSR N  +V  GYY
Sbjct: 181 DRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYY 240

Query: 241 YLCDAGYPNVDGFLAPYRGERYHLSDWRG-SNPPRNPGEFFNKAHSSARNIIERAFGALK 300
           YL DAGYPN +GFLAPYRG+RYHL +WRG  N P    EFFN  HSSARN+IERAFG LK
Sbjct: 241 YLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLK 300

Query: 301 NRWTILRRKSFYPLKVQVKIITACCLLHNLICREMGSTIGLEILGENDATLYQEEMDDTP 360
            RW ILR KS+YP++VQ + I ACCLLHNLI REM +    + + E D+T      DD  
Sbjct: 301 GRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADD-- 360

Query: 361 TINFVETSPLWTTFRDFMAQRMF 383
            I+++ETS  W+ +RD +A+ MF
Sbjct: 361 -IHYIETSNEWSQWRDNLAEEMF 380

[Close]

BLAST of Sed0019097 vs. ExPASy TrEMBL
Match: A0A5A7TWH8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001380 PE=3 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 2.5e-119
Identity = 216/383 (56.40%), Postives = 268/383 (69.97%), Query Frame = 0


Query: 1   MDPDKTIAVLTILYTWQNQFLLLANLVMNYNPRTKNYSSFFRHHFRQMTFFSMIRQSDLA 60
           MD  +  +++      Q Q LL+  L+ N   R  +     RH  RQ+ +F MI  SDL 
Sbjct: 1   MDEQELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 61  CRETTRMNRSCFETLCDMLRTHSGLRGTDYIDVEEMVAMFLHILAHDVKNRVVRRIFTRS 120
           CRE+TRM+R CF  LC +LRT +GL  T+ +DVEEMVAMFLHILAHDVKNRV++R F RS
Sbjct: 61  CRESTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 121 GETVSRHFQSILTAVIRCHDILYKKLEPIQPSCADSRWKWFENCLGALDGTHIELQVPVE 180
           GET+S HF  +L AVIR H+ L KK +P+   C D RW+WFENCLGALDGT+I++ VP  
Sbjct: 121 GETISCHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 181 NRASFRNRKGIITTNVLVVCAPSGEFIYVLAGWEGSAADSRVLRDVLSRNNGFQVSHGYY 240
           +RA +R RKG + TNVL VC   G+F+YVLAGWEGSAADSR+LRD LSR NG +V  GYY
Sbjct: 181 DRARYRTRKGEVATNVLGVCDRKGDFVYVLAGWEGSAADSRILRDALSRPNGLKVPKGYY 240

Query: 241 YLCDAGYPNVDGFLAPYRGERYHLSDWRG-SNPPRNPGEFFNKAHSSARNIIERAFGALK 300
           YL DAGYPN +GFLAPYRG+RYHL +W G  N P    EFFN  H SARN+IERAFG LK
Sbjct: 241 YLVDAGYPNPEGFLAPYRGQRYHLQEWHGPENAPSTSKEFFNMKHPSARNVIERAFGVLK 300

Query: 301 NRWTILRRKSFYPLKVQVKIITACCLLHNLICREMGSTIGLEILGENDATLYQEEMDDTP 360
            RW ILR KS+YP++VQ + I ACCLLHNLI REM +    + + E D+T      DD  
Sbjct: 301 GRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADD-- 360

Query: 361 TINFVETSPLWTTFRDFMAQRMF 383
            I+++ETS  W+ +RD +A+ MF
Sbjct: 361 -IHYIETSNEWSQWRDDLAEEMF 380

[Close]

BLAST of Sed0019097 vs. ExPASy TrEMBL
Match: A0A5A7U476 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00800 PE=3 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 4.2e-119
Identity = 216/383 (56.40%), Postives = 268/383 (69.97%), Query Frame = 0


Query: 1   MDPDKTIAVLTILYTWQNQFLLLANLVMNYNPRTKNYSSFFRHHFRQMTFFSMIRQSDLA 60
           MD  +  +++      Q Q LL+  L+ N   R  +     RH  RQ+ +F MI  SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 61  CRETTRMNRSCFETLCDMLRTHSGLRGTDYIDVEEMVAMFLHILAHDVKNRVVRRIFTRS 120
           CR++TRM+R CF  LC +LRT +GL  T+ +DVEEMVAMFLHILAHDVKNRV++R F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 121 GETVSRHFQSILTAVIRCHDILYKKLEPIQPSCADSRWKWFENCLGALDGTHIELQVPVE 180
           GET+SRHF  +L AVIR H+ L KK +P+   C D RWKWFENCLGALDGT+I++ VP  
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFENCLGALDGTYIKVNVPAS 180

Query: 181 NRASFRNRKGIITTNVLVVCAPSGEFIYVLAGWEGSAADSRVLRDVLSRNNGFQVSHGYY 240
           +RA +R RKG + TNVL VC   G+F+YVLAGWEG AADSR+LRD LSR N  +V  GYY
Sbjct: 181 DRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGLAADSRILRDALSRPNRLKVPKGYY 240

Query: 241 YLCDAGYPNVDGFLAPYRGERYHLSDWRG-SNPPRNPGEFFNKAHSSARNIIERAFGALK 300
           YL DAGY N +GFLAPYRG+RYHL +WRG  N P    EFFN  HSSARN+IERAFG LK
Sbjct: 241 YLVDAGYQNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLK 300

Query: 301 NRWTILRRKSFYPLKVQVKIITACCLLHNLICREMGSTIGLEILGENDATLYQEEMDDTP 360
            RW ILR KS+YP++VQ + I ACCLLHNLI REM +    + + E D+T      DD  
Sbjct: 301 GRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADD-- 360

Query: 361 TINFVETSPLWTTFRDFMAQRMF 383
            I+++ETS  W+ +RD +A+ MF
Sbjct: 361 -IHYIETSNEWSQWRDNLAEEMF 380

[Close]

BLAST of Sed0019097 vs. ExPASy TrEMBL
Match: A0A5A7U9H2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00110 PE=3 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 1.2e-118
Identity = 214/383 (55.87%), Postives = 267/383 (69.71%), Query Frame = 0


Query: 1   MDPDKTIAVLTILYTWQNQFLLLANLVMNYNPRTKNYSSFFRHHFRQMTFFSMIRQSDLA 60
           MD  +  +++      Q Q LL+  L+ N   R  +     RH  RQ+ +F MI  SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 61  CRETTRMNRSCFETLCDMLRTHSGLRGTDYIDVEEMVAMFLHILAHDVKNRVVRRIFTRS 120
           C ++TRM+R CF  LC +LRT +GL  T+ +DVEEMVAMFLHIL HDVKNRV++R F RS
Sbjct: 61  CHQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILVHDVKNRVIQREFMRS 120

Query: 121 GETVSRHFQSILTAVIRCHDILYKKLEPIQPSCADSRWKWFENCLGALDGTHIELQVPVE 180
           GET+SRHF  +L AVIR H+ L KK +P+   C D RW+WFENCLGALDGT+I++ VP  
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 181 NRASFRNRKGIITTNVLVVCAPSGEFIYVLAGWEGSAADSRVLRDVLSRNNGFQVSHGYY 240
           +RA +R RKG + TNVL VC   G+F+YVLAGWEGSAADSR+LRD LSR N  +V  GYY
Sbjct: 181 DRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYY 240

Query: 241 YLCDAGYPNVDGFLAPYRGERYHLSDWRG-SNPPRNPGEFFNKAHSSARNIIERAFGALK 300
           YL DAGYPN +GFLAPYRG+RYHL +WRG  N P    EFFN  HS ARN+IERAFG LK
Sbjct: 241 YLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSFARNVIERAFGVLK 300

Query: 301 NRWTILRRKSFYPLKVQVKIITACCLLHNLICREMGSTIGLEILGENDATLYQEEMDDTP 360
            RW ILR KS+YP++VQ + I ACCLLHNLI REM +    + + E D+T      DD  
Sbjct: 301 GRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTTADD-- 360

Query: 361 TINFVETSPLWTTFRDFMAQRMF 383
            I+++ETS  W+ +RD +A+ MF
Sbjct: 361 -IHYIETSNEWSQWRDNLAEEMF 380

[Close]

BLAST of Sed0019097 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 209.5 bits (532), Expect = 4.7e-54
Identity = 109/270 (40.37%), Postives = 154/270 (57.04%), Query Frame = 0


Query: 61  CRETTRMNRSCFETLCDMLRTHSGLRGTDYIDVEEMVAMFLHILAHDVKNRVVRRIFTRS 120
           C E  RM++  F  LCD+L+T   LR T+ I +E  +A+FL I+ H+++ R V+ +F  S
Sbjct: 42  CFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYS 101

Query: 121 GETVSRHFQSILTAVIRCHDILYKKLEPIQPSCADSRWKWFENCLGALDGTHIELQVPVE 180
           GET+SRHF ++L AVI      ++          ++   +F++C+G +D  HI + V V+
Sbjct: 102 GETISRHFNNVLNAVIAISKDFFQPNS--NSDTLENDDPYFKDCVGVVDSFHIPVMVGVD 161

Query: 181 NRASFRNRKGIITTNVLVVCAPSGEFIYVLAGWEGSAADSRVLRDVLSRNNGFQVSHGYY 240
            +  FRN  G++T NVL   +    F YVLAGWEGSA+D +VL   L+R N  QV  G Y
Sbjct: 162 EQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQGKY 221

Query: 241 YLCDAGYPNVDGFLAPYRGERYHLSDWRGSNPPRNPGEFFNKAHSSARNIIERAFGALKN 300
           Y+ D  YPN+ GF+APY G          +N      E FN+ H      I R FGALK 
Sbjct: 222 YIVDNKYPNLPGFIAPYHGV--------STNSREEAKEMFNERHKLLHRAIHRTFGALKE 281

Query: 301 RWTILRRKSFYPLKVQVKIITACCLLHNLI 331
           R+ IL     YPL+ QVK++ A C LHN +
Sbjct: 282 RFPILLSAPPYPLQTQVKLVIAACALHNYV 301

[Close]

BLAST of Sed0019097 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 164.1 bits (414), Expect = 2.3e-40
Identity = 100/264 (37.88%), Postives = 144/264 (54.55%), Query Frame = 0


Query: 54  IRQSDLACRETTRMNRSCFETLCDMLRTHSGLRGTDYIDVEEMVAMFLHILAHDVKNRVV 113
           ++Q   AC +  RM+  CF TLC+ML+T+  L+ T  I +EE VAMFL I  H+   R V
Sbjct: 59  LQQDAAACLQLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDV 118

Query: 114 RRIFTRSGETVSRHFQSILTA--VIRCHDI-------LYKKLEPIQPSCADSR-WKWFEN 173
              F R+ ETV R F+ +LTA  ++ C  I       LY+  E +Q    D R W +F  
Sbjct: 119 GLRFGRNQETVQRKFREVLTATELLACDYIRTPTRQELYRIPERLQ---VDQRYWPYFSG 178

Query: 174 CLGALDGTHIELQVPVENRASFRNRKGIITTNVLVVCAPSGEFIYVLAGWEGSAADSRVL 233
            +GA+DGTH+ ++V  + +  + NR    + N++ +C     F Y+  G  GS  D+ VL
Sbjct: 179 FVGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVL 238

Query: 234 RDVLSRNNGFQVSHG-YYYLCDAGYPNVDGFLAPYRGE-----RYHLSDWRGSNPPRNPG 293
           +     ++ F +     YYL D+GYPN  G LAPYR       RYH+S +     PRN  
Sbjct: 239 QIAQQSDSEFPLPPSEKYYLVDSGYPNKQGLLAPYRSSRNRVVRYHMSQFYYGPRPRNKH 298

Query: 294 EFFNKAHSSARNIIERAFGALKNR 302
           E FN+ H+S R++IER F   KN+
Sbjct: 299 ELFNQCHTSLRSVIERTFRIWKNK 319

[Close]

BLAST of Sed0019097 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-24
Identity = 59/132 (44.70%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 206 FIYVLAGWEGSAADSRVLRDVLSRNNGFQVSHGYYYLCDAGYPNVDGFLAPYRGERYHLS 265
           FIYVL+GWEGSA DSRVL D L +          +YL D G+ N   FLAP+RG RYHL 
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALRK----------FYLVDCGFANRLNFLAPFRGVRYHLQ 84

Query: 266 DWRGS-NPPRNPGEFFNKAHSSARNIIERAFGALKNRWTILRRKSFYPLKVQVKIITACC 325
           ++ G    P  P E FN  H S RN+IER FG  K+R+ I +    +  K Q  ++  C 
Sbjct: 85  EFAGQRRDPETPHELFNLRHVSLRNVIERIFGIFKSRFAIFKSAPPFSYKKQAGLVLTCA 144

Query: 326 LLHNLICREMGS 337
            LHN + +E  S
Sbjct: 145 ALHNFLRKECRS 146

[Close]

BLAST of Sed0019097 vs. TAIR 10
Match: AT5G12010.1 (unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 92.8 bits (229), Expect = 6.4e-19
Identity = 77/287 (26.83%), Postives = 126/287 (43.90%), Query Frame = 0


Query: 62  RETTRMNRSCFETLCDMLRTHSGLRGT---DYIDVEEMVAMFLHILAHDVKNRVVRRIFT 121
           ++  RM++S FE +CD L +      T   + I V + VA+ +  LA     R+V + F 
Sbjct: 176 KKAFRMSKSTFELICDELNSAVAKEDTALRNAIPVRQRVAVCIWRLATGEPLRLVSKKF- 235

Query: 122 RSGETVSRHFQSILTAVIRCHDILYKKL--EPIQPSCADSRWKW-----FENCLGALDGT 181
             G  +S   + +L       D+L  K    P   S  + R ++       N +G++  T
Sbjct: 236 --GLGISTCHKLVLEVCKAIKDVLMPKYLQWPDDESLRNIRERFESVSGIPNVVGSMYTT 295

Query: 182 HIELQVPVENRASF-------RNRKGIITTNVLVVCAPSGEFIYVLAGWEGSAADSRVLR 241
           HI +  P  + AS+       RN+K   +  +  V  P G F  +  GW GS  D +VL 
Sbjct: 296 HIPIIAPKISVASYFNKRHTERNQKTSYSITIQAVVNPKGVFTDLCIGWPGSMPDDKVLE 355

Query: 242 DVL--SRNNGFQVSHGYYYLCDAGYPNVDGFLAPYRGERYHLSDWRGSNPPRNPGEFFNK 301
             L   R N   +  G +     G+P +D  L PY  +    +              FN+
Sbjct: 356 KSLLYQRANNGGLLKGMWVAGGPGHPLLDWVLVPYTQQNLTWTQ-----------HAFNE 415

Query: 302 AHSSARNIIERAFGALKNRWTILRRKSFYPLKVQVKIITACCLLHNL 330
             S  + + + AFG LK RW  L++++   L+    ++ ACC+LHN+
Sbjct: 416 KMSEVQGVAKEAFGRLKGRWACLQKRTEVKLQDLPTVLGACCVLHNI 448

[Close]

BLAST of Sed0019097 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 87.4 bits (215), Expect = 2.7e-17
Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 158 WKWFENCLGALDGTHIELQVPVENRASFRNRKGIITTNVLVVCAPSGEFIYVLAGWEGSA 217
           + +F++C+GA+D THI   V  +   SFRNRKG I+ N+L  C    EF+YVL+GWEGSA
Sbjct: 19  YPYFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSA 78

Query: 218 ADSRVLRDVLSRNN 232
            DS+VL D L+RN+
Sbjct: 79  HDSKVLNDALTRNS 92

The following BLAST results are available for this feature:

BLAST of Sed0019097 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046727.1	1.6e-120	56.92	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]
KAA0035620.1	4.6e-120	56.66	retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon...	[more]
KAA0047510.1	5.1e-119	56.40	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048361.1	8.7e-119	56.40	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051057.1	2.5e-118	55.87	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0019097 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2U3	5.9e-17	26.09	Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1	[more]
Q96MB7	6.3e-11	29.41	Putative nuclease HARBI1 OS=Homo sapiens OX=9606 GN=HARBI1 PE=1 SV=1	[more]
B0BN95	1.1e-10	30.00	Putative nuclease HARBI1 OS=Rattus norvegicus OX=10116 GN=Harbi1 PE=2 SV=1	[more]
Q17QR8	1.4e-10	29.41	Putative nuclease HARBI1 OS=Bos taurus OX=9913 GN=HARBI1 PE=2 SV=1	[more]
Q6AZB8	9.1e-10	28.74	Putative nuclease HARBI1 OS=Danio rerio OX=7955 GN=harbi1 PE=2 SV=1	[more]

BLAST of Sed0019097 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXW1	7.7e-121	56.92	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDX0	2.2e-120	56.66	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TWH8	2.5e-119	56.40	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U476	4.2e-119	56.40	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U9H2	1.2e-118	55.87	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Sed0019097 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	4.7e-54	40.37	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	2.3e-40	37.88	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35695.1	1.0e-24	44.70	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G12010.1	6.4e-19	26.83	unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, ...	[more]
AT5G28950.1	2.7e-17	52.70	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 168..328 e-value: 2.8E-28 score: 98.6
None	No IPR available	PANTHER	PTHR22930:SF211	NUCLEASE HARBI1-RELATED	coord: 34..330
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 34..330

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019097.1	Sed0019097.1	mRNA