Sed0028180 (gene) Chayote v1

Overview


Name	Sed0028180
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein PROTON GRADIENT REGULATION 5, chloroplastic-like
Location	LG02: 50491788 .. 50492223 (-)
RNA-Seq Expression	Sed0028180
Synteny	Sed0028180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACTTCAATTTCTGCTACTGCTCTTCATAAACCTCTTTTCTCCTCCTTCCATGGAGGCAGGGGTGCTTCGATTTGTGGCGAAAACGGTGAGAAGCTGATTACGTCGGTCCCGGAAGTGGTTCGAGTTGCGAAGGCTACGAGATTCCGGCCAATGATAAAGAATGTAAGTGAAGGGAAAGGTGTCTGTGGTTGTTCTTGCTCGGAATGTTGTTGGAAAGAAACGTTTCAATCAGTTGAGAGGCAAGGCCATTGCCCTGCATTCGCAAGTAAATTAGTTACCATTTGAATTTTCCTTTTGGGTTTAGGGAGAAACTTGAGTTGAAGTTTTTCATTTTGGATAGGTTATTACTGAGTTCTGCAAATCTATAGGAGTTGATGCAAACCAAAGACAGGGGTTGATTAGGTTAGCCAAGAAGAATGGAGACAGGTGA

mRNA sequence

ATGGCAACTTCAATTTCTGCTACTGCTCTTCATAAACCTCTTTTCTCCTCCTTCCATGGAGGCAGGGGTGCTTCGATTTGTGGCGAAAACGGTGAGAAGCTGATTACGTCGGTCCCGGAAGTGGTTCGAGTGTCTGTGGTTGTTCTTGCTCGGAATGTTGTTGGAAAGAAACGTTTCAATCAGTTGAGAGGCAAGGCCATTGCCCTGCATTCGCAAGTTATTACTGAGTTCTGCAAATCTATAGGAGTTGATGCAAACCAAAGACAGGGGTTGATTAGGTTAGCCAAGAAGAATGGAGACAGGTGA

Coding sequence (CDS)

ATGGCAACTTCAATTTCTGCTACTGCTCTTCATAAACCTCTTTTCTCCTCCTTCCATGGAGGCAGGGGTGCTTCGATTTGTGGCGAAAACGGTGAGAAGCTGATTACGTCGGTCCCGGAAGTGGTTCGAGTGTCTGTGGTTGTTCTTGCTCGGAATGTTGTTGGAAAGAAACGTTTCAATCAGTTGAGAGGCAAGGCCATTGCCCTGCATTCGCAAGTTATTACTGAGTTCTGCAAATCTATAGGAGTTGATGCAAACCAAAGACAGGGGTTGATTAGGTTAGCCAAGAAGAATGGAGACAGGTGA

Protein sequence

MATSISATALHKPLFSSFHGGRGASICGENGEKLITSVPEVVRVSVVVLARNVVGKKRFNQLRGKAIALHSQVITEFCKSIGVDANQRQGLIRLAKKNGDR

Homology

[Close]

BLAST of Sed0028180 vs. NCBI nr
Match: XP_038883871.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 156.0 bits (393), Expect = 1.7e-34
Identity = 84/122 (68.85%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 1   MATSISATALHKPLFSSFHGGRGASICGENGEKLITSVPEVVRVS--------------- 60
           MATSI+AT LHKPL SSFHGG G SICG+N   LI SVPEVVRV+               
Sbjct: 1   MATSIAATGLHKPLSSSFHGGWGTSICGDNSIVLIKSVPEVVRVAKPVRFRPMMKNINEG 60

Query: 61  ------VVVLARNVVGKKRFNQLRGKAIALHSQVITEFCKSIGVDANQRQGLIRLAKKNG 102
                 VVVLARN++GKKRFNQLRGKAIALHSQ+ITEFCKSIG DA QRQGLIRLAKKNG
Sbjct: 61  KGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120

[Close]

BLAST of Sed0028180 vs. NCBI nr
Match: XP_004134044.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic [Cucumis sativus] >KGN56822.1 hypothetical protein Csa_010680 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 3.9e-34
Identity = 83/122 (68.03%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 1   MATSISATALHKPLFSSFHGGRGASICGENGEKLITSVPEVVRVS--------------- 60
           MATSISAT LHKPL SSFHGG G SICG+N   LI SVP+VVRV+               
Sbjct: 1   MATSISATGLHKPLSSSFHGGWGTSICGDNSIVLIKSVPDVVRVAKPVRFRPMMKNINEG 60

Query: 61  ------VVVLARNVVGKKRFNQLRGKAIALHSQVITEFCKSIGVDANQRQGLIRLAKKNG 102
                 VVVLARN++GKKRFNQLRGKAIALHSQ+ITEFCKSIG DA QRQGLIRLAKKNG
Sbjct: 61  KGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120

[Close]

BLAST of Sed0028180 vs. NCBI nr
Match: XP_008438472.1 (PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucumis melo] >KAA0049216.1 protein PROTON GRADIENT REGULATION 5 [Cucumis melo var. makuwa] >TYK17342.1 protein PROTON GRADIENT REGULATION 5 [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 5.0e-34
Identity = 82/122 (67.21%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 1   MATSISATALHKPLFSSFHGGRGASICGENGEKLITSVPEVVRVS--------------- 60
           MATSISAT LHKPL SSFHGG G S+CG+N   LI SVP+VVRV+               
Sbjct: 1   MATSISATGLHKPLSSSFHGGWGTSVCGDNSIVLIKSVPDVVRVAKPVRFRPMMKNINEG 60

Query: 61  ------VVVLARNVVGKKRFNQLRGKAIALHSQVITEFCKSIGVDANQRQGLIRLAKKNG 102
                 VVVLARN++GKKRFNQLRGKAIALHSQ+ITEFCKSIG DA QRQGLIRLAKKNG
Sbjct: 61  KGIFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120

[Close]

BLAST of Sed0028180 vs. NCBI nr
Match: KAG6582412.1 (Protein PROTON GRADIENT REGULATION 5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.1 bits (383), Expect = 2.5e-33
Identity = 80/122 (65.57%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 1   MATSISATALHKPLFSSFHGGRGASICGENGEKLITSVPEVVRVS--------------- 60
           MATS+S    HKPL+S+FHGG G SICG+N   LI SVPE VRV+               
Sbjct: 1   MATSVSVAGFHKPLYSTFHGGWGTSICGDNSTVLIKSVPEAVRVAKPVRFRPVMKNINEG 60

Query: 61  ------VVVLARNVVGKKRFNQLRGKAIALHSQVITEFCKSIGVDANQRQGLIRLAKKNG 102
                 VVVLARN++GKKRFNQLRGKAIALHSQVITEFCKSIG DA QRQGLIRLAKKNG
Sbjct: 61  KGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNG 120

[Close]

BLAST of Sed0028180 vs. NCBI nr
Match: XP_023527994.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.1 bits (383), Expect = 2.5e-33
Identity = 80/122 (65.57%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 1   MATSISATALHKPLFSSFHGGRGASICGENGEKLITSVPEVVRVS--------------- 60
           MATS+S    HKPL+S+FHGG G SICG+N   LI SVPE VRV+               
Sbjct: 1   MATSVSVAGFHKPLYSTFHGGWGTSICGDNSTVLIKSVPEAVRVTKPVRFLPVMKNINEG 60

Query: 61  ------VVVLARNVVGKKRFNQLRGKAIALHSQVITEFCKSIGVDANQRQGLIRLAKKNG 102
                 VVVLARN++GKKRFNQLRGKAIALHSQVITEFCKSIG DA QRQGLIRLAKKNG
Sbjct: 61  KGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNG 120

[Close]

BLAST of Sed0028180 vs. ExPASy Swiss-Prot
Match: Q9SL05 (Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGR5 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.9e-25
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = 0


Query: 2   ATSISATALHKPLF-SSFHGGRGASICGENGEKLITSV---PEVVRVS------------ 61
           A SISA   ++ L  +SF+GG G+SI GE+ + +++     P+  RVS            
Sbjct: 3   AASISAIGCNQTLIGTSFYGGWGSSISGEDYQTMLSKTVAPPQQARVSRKAIRAVPMMKN 62

Query: 62  ----------VVVLARNVVGKKRFNQLRGKAIALHSQVITEFCKSIGVDANQRQGLIRLA 102
                     +VV+ RN+VGKKRFNQLRGKAIALHSQVITEFCKSIG DA QRQGLIRLA
Sbjct: 63  VNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLA 122

[Close]

BLAST of Sed0028180 vs. ExPASy TrEMBL
Match: A0A0A0L870 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134710 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.9e-34
Identity = 83/122 (68.03%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 1   MATSISATALHKPLFSSFHGGRGASICGENGEKLITSVPEVVRVS--------------- 60
           MATSISAT LHKPL SSFHGG G SICG+N   LI SVP+VVRV+               
Sbjct: 1   MATSISATGLHKPLSSSFHGGWGTSICGDNSIVLIKSVPDVVRVAKPVRFRPMMKNINEG 60

Query: 61  ------VVVLARNVVGKKRFNQLRGKAIALHSQVITEFCKSIGVDANQRQGLIRLAKKNG 102
                 VVVLARN++GKKRFNQLRGKAIALHSQ+ITEFCKSIG DA QRQGLIRLAKKNG
Sbjct: 61  KGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120

[Close]

BLAST of Sed0028180 vs. ExPASy TrEMBL
Match: A0A5A7U4M1 (Protein PROTON GRADIENT REGULATION 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001970 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.4e-34
Identity = 82/122 (67.21%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 1   MATSISATALHKPLFSSFHGGRGASICGENGEKLITSVPEVVRVS--------------- 60
           MATSISAT LHKPL SSFHGG G S+CG+N   LI SVP+VVRV+               
Sbjct: 1   MATSISATGLHKPLSSSFHGGWGTSVCGDNSIVLIKSVPDVVRVAKPVRFRPMMKNINEG 60

Query: 61  ------VVVLARNVVGKKRFNQLRGKAIALHSQVITEFCKSIGVDANQRQGLIRLAKKNG 102
                 VVVLARN++GKKRFNQLRGKAIALHSQ+ITEFCKSIG DA QRQGLIRLAKKNG
Sbjct: 61  KGIFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120

[Close]

BLAST of Sed0028180 vs. ExPASy TrEMBL
Match: A0A1S3AW42 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103483556 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.4e-34
Identity = 82/122 (67.21%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 1   MATSISATALHKPLFSSFHGGRGASICGENGEKLITSVPEVVRVS--------------- 60
           MATSISAT LHKPL SSFHGG G S+CG+N   LI SVP+VVRV+               
Sbjct: 1   MATSISATGLHKPLSSSFHGGWGTSVCGDNSIVLIKSVPDVVRVAKPVRFRPMMKNINEG 60

Query: 61  ------VVVLARNVVGKKRFNQLRGKAIALHSQVITEFCKSIGVDANQRQGLIRLAKKNG 102
                 VVVLARN++GKKRFNQLRGKAIALHSQ+ITEFCKSIG DA QRQGLIRLAKKNG
Sbjct: 61  KGIFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120

[Close]

BLAST of Sed0028180 vs. ExPASy TrEMBL
Match: A0A6J1E9I8 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111432069 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.1e-33
Identity = 80/122 (65.57%), Postives = 87/122 (71.31%), Query Frame = 0


Query: 1   MATSISATALHKPLFSSFHGGRGASICGENGEKLITSVPEVVRVS--------------- 60
           MATS+S    HKPL+S+FHGG G SICG N   LI SVPE VRV+               
Sbjct: 1   MATSVSVAGFHKPLYSTFHGGWGTSICGHNSTVLIKSVPEAVRVAKPVRFRPVMKNINEG 60

Query: 61  ------VVVLARNVVGKKRFNQLRGKAIALHSQVITEFCKSIGVDANQRQGLIRLAKKNG 102
                 VVVLARN++GKKRFNQLRGKAIALHSQVITEFCKSIG DA QRQGLIRLAKKNG
Sbjct: 61  KGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNG 120

[Close]

BLAST of Sed0028180 vs. ExPASy TrEMBL
Match: A0A6J1IE84 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111473217 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.3e-32
Identity = 81/122 (66.39%), Postives = 87/122 (71.31%), Query Frame = 0


Query: 1   MATSISATALHKPLFSSFHGGRGASICGENGEKLITSVPEVVRVS--------------- 60
           MA SISA+ LHKPL SSFHGG G+SICGE    L  SVPEVVRV                
Sbjct: 1   MAASISASQLHKPLPSSFHGGWGSSICGETTGMLAKSVPEVVRVGKPVRFRPMMKNVNEG 60

Query: 61  ------VVVLARNVVGKKRFNQLRGKAIALHSQVITEFCKSIGVDANQRQGLIRLAKKNG 102
                  VVLARN++GKKRFNQLRGKAIALHSQ+ITEFCKSIG DA QRQGLIRLAKKNG
Sbjct: 61  KGVFAPAVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120

[Close]

BLAST of Sed0028180 vs. TAIR 10
Match: AT2G05620.1 (proton gradient regulation 5 )

HSP 1 Score: 114.0 bits (284), Expect = 7.0e-26
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = 0


Query: 2   ATSISATALHKPLF-SSFHGGRGASICGENGEKLITSV---PEVVRVS------------ 61
           A SISA   ++ L  +SF+GG G+SI GE+ + +++     P+  RVS            
Sbjct: 3   AASISAIGCNQTLIGTSFYGGWGSSISGEDYQTMLSKTVAPPQQARVSRKAIRAVPMMKN 62

Query: 62  ----------VVVLARNVVGKKRFNQLRGKAIALHSQVITEFCKSIGVDANQRQGLIRLA 102
                     +VV+ RN+VGKKRFNQLRGKAIALHSQVITEFCKSIG DA QRQGLIRLA
Sbjct: 63  VNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLA 122

The following BLAST results are available for this feature:

BLAST of Sed0028180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883871.1	1.7e-34	68.85	protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Benincasa hispida]	[more]
XP_004134044.1	3.9e-34	68.03	protein PROTON GRADIENT REGULATION 5, chloroplastic [Cucumis sativus] >KGN56822....	[more]
XP_008438472.1	5.0e-34	67.21	PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucumis mel...	[more]
KAG6582412.1	2.5e-33	65.57	Protein PROTON GRADIENT REGULATION 5, chloroplastic, partial [Cucurbita argyrosp...	[more]
XP_023527994.1	2.5e-33	65.57	protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita pepo subsp. ...	[more]

BLAST of Sed0028180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SL05	9.9e-25	53.97	Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]

BLAST of Sed0028180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L870	1.9e-34	68.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134710 PE=4 SV=1	[more]
A0A5A7U4M1	2.4e-34	67.21	Protein PROTON GRADIENT REGULATION 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3AW42	2.4e-34	67.21	protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucumis melo OX=3656...	[more]
A0A6J1E9I8	2.1e-33	65.57	protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita moschata O...	[more]
A0A6J1IE84	2.3e-32	66.39	protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita maxima OX=...	[more]

BLAST of Sed0028180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G05620.1	7.0e-26	53.97	proton gradient regulation 5	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35709:SF3	PROTON GRADIENT REGULATION 5	coord: 1..44
None	No IPR available	PANTHER	PTHR35709:SF3	PROTON GRADIENT REGULATION 5	coord: 45..101
IPR037497	Protein PROTON GRADIENT REGULATION 5	PANTHER	PTHR35709	PROTEIN PROTON GRADIENT REGULATION 5, CHLOROPLASTIC	coord: 45..101
IPR037497	Protein PROTON GRADIENT REGULATION 5	PANTHER	PTHR35709	PROTEIN PROTON GRADIENT REGULATION 5, CHLOROPLASTIC	coord: 1..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0028180.1	Sed0028180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0009644	response to high light intensity
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0009055	electron transfer activity