Sed0015712 (gene) Chayote v1

Overview


Name	Sed0015712
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Retrotransposon protein
Location	LG11: 6492530 .. 6493468 (-)
RNA-Seq Expression	Sed0015712
Synteny	Sed0015712

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGAAGAAATGAGAAACGCTCTTGGACTGCATTAGAGGATGCAAAGTTAATAGAAAGTTTAATGGCTTTGGTTCAAATTCTAGGCTGGAAAGGCGATAATGGAACATTCAGGCCTAGATATCTGAATAAACTTGAGAACTTCATGCAAGAAAGAATACCAGGTTGCACACTCGGTACGAAAGGTATAGAGAACAAAATCAGGTATTGGAAAAACAATACGATGCAATAGATGAGTTGAAAGGATTTGCATGCAGCGGCTTTGGTTGGAATGATGAGCTGAAAAAGGAGTTTTTAGGAATTGGGTGAAGGTTAGTGTGATTTATACAAATTGACATGAATAATATGTAACTTTGATTAATGTTAATGCTAATTTTTGTAAATGATTGCAGACACACCCAACAGCGAAGAGTTTGAATAATAAACCATTCCCTTACTATGATGAAATGTCCATTATTTTGGAAAGGATCGTGCTACTGGAGAAGGGGAAGCAGATTTTGCTAATCTTGGATCAGGAAATAGAGCTTTTAACAAACGTGACTTTGACCTCATCCCACCTTCAGAGGAGTTTCAAGGAACTCCATCGAGTCATAATGATGGAGCTGCAAGTAGTGGATCTAGTAGAAAGCGAAAGAGAAGCACAACAGCTGCTGACTTGAATGATATAGTTGAAAATGCAATGTATATGCAACAGAGTCACGTGAAAGTGATTTCGGAATGGCCTAAGGAGCAATGGAGTGTTGAAAGTGACCTCTGTGAAAGATGTGTGGCGGAATTGGGCAAAATAACTTATCTATTTGATGTTGAAGATTGTGACAAACCAGGAGAAAATGGAACAATTTCTTGCCAATCCACAACAGTACAAGTTGTCACACCTCCGTCACATGCTACAGTACATCAAATGTCTGTCTTGATGTTAGAGCAAGTTGTTCCATAA

mRNA sequence

ATGGAAGGAAGAAATGAGAAACGCTCTTGGACTGCATTAGAGGATGCAAAGTTAATAGAAAGTTTAATGGCTTTGGTTCAAATTCTAGGCTGGAAAGGCGATAATGGAACATTCAGGCCTAGATATCTGAATAAACTTGAGAACTTCATGCAAGAAAGAATACCAGGTTGCACACTCGGTACGAAAGAGGAGTTTCAAGGAACTCCATCGAGTCATAATGATGGAGCTGCAAGTAGTGGATCTAGTAGAAAGCGAAAGAGAAGCACAACAGCTGCTGACTTGAATGATATAGTTGAAAATGCAATGTATATGCAACAGAGTCACGTGAAAGTGATTTCGGAATGGCCTAAGGAGCAATGGAGTGTTGAAAGTGACCTCTGTGAAAGATGTGTGGCGGAATTGGGCAAAATAACTTATCTATTTGATGTTGAAGATTGTGACAAACCAGGAGAAAATGGAACAATTTCTTGCCAATCCACAACAGTACAAGTTGTCACACCTCCGTCACATGCTACAGTACATCAAATGTCTGTCTTGATGTTAGAGCAAGTTGTTCCATAA

Coding sequence (CDS)

ATGGAAGGAAGAAATGAGAAACGCTCTTGGACTGCATTAGAGGATGCAAAGTTAATAGAAAGTTTAATGGCTTTGGTTCAAATTCTAGGCTGGAAAGGCGATAATGGAACATTCAGGCCTAGATATCTGAATAAACTTGAGAACTTCATGCAAGAAAGAATACCAGGTTGCACACTCGGTACGAAAGAGGAGTTTCAAGGAACTCCATCGAGTCATAATGATGGAGCTGCAAGTAGTGGATCTAGTAGAAAGCGAAAGAGAAGCACAACAGCTGCTGACTTGAATGATATAGTTGAAAATGCAATGTATATGCAACAGAGTCACGTGAAAGTGATTTCGGAATGGCCTAAGGAGCAATGGAGTGTTGAAAGTGACCTCTGTGAAAGATGTGTGGCGGAATTGGGCAAAATAACTTATCTATTTGATGTTGAAGATTGTGACAAACCAGGAGAAAATGGAACAATTTCTTGCCAATCCACAACAGTACAAGTTGTCACACCTCCGTCACATGCTACAGTACATCAAATGTCTGTCTTGATGTTAGAGCAAGTTGTTCCATAA

Protein sequence

MEGRNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTLGTKEEFQGTPSSHNDGAASSGSSRKRKRSTTAADLNDIVENAMYMQQSHVKVISEWPKEQWSVESDLCERCVAELGKITYLFDVEDCDKPGENGTISCQSTTVQVVTPPSHATVHQMSVLMLEQVVP

Homology

[Close]

BLAST of Sed0015712 vs. NCBI nr
Match: XP_038902479.1 (uncharacterized protein At2g29880-like [Benincasa hispida])

HSP 1 Score: 75.9 bits (185), Expect = 4.2e-10
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 3  GRNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTL 60
          G+  K  W+ +EDAKL+E+L+ LV+  GW+ DNGTFRP YL  LE  + E++PGCTL
Sbjct: 5  GKRSKHIWSKVEDAKLVEALLYLVE-TGWRSDNGTFRPGYLQHLERILHEKVPGCTL 60

[Close]

BLAST of Sed0015712 vs. NCBI nr
Match: TYK03073.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-09
Identity = 51/156 (32.69%), Postives = 74/156 (47.44%), Query Frame = 0


Query: 4   RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIP-GCTLGTK 63
           R  K +WT  E+A L+E L+ LV   GW+ DNGTF+P YLN+L   +  +IP G  + + 
Sbjct: 6   RLPKHNWTKEEEAGLVECLVELVNADGWRSDNGTFQPEYLNQLARMITFKIPAGVWVESF 65

Query: 64  EEFQGTPSSH-----NDGAASS-------GSSRKRKRSTTAADLNDIVENAMYMQQSHVK 123
            +     S+       D A  +        S  KRKR   AAD  DI+  A+      + 
Sbjct: 66  ADVGSNDSARYEAFVTDAALDTNFQLMYVSSGSKRKRGGQAADSGDILRTAIEYGNEQLN 125

Query: 124 VISEWPKEQWSVESDLCERCVAELGKITYLFDVEDC 147
            I+EWP  Q    S + +  V +L  I  L  ++ C
Sbjct: 126 CIAEWPVLQHQDASQIRQEVVRQLEAIPELTLMDRC 161

[Close]

BLAST of Sed0015712 vs. NCBI nr
Match: KAA0041796.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK27085.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-09
Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = 0


Query: 4   RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTLGTKE 63
           R  K  WT  E+A L+E L+ LV    W+ +NGTFRP YL +LE  M  ++PG       
Sbjct: 6   REPKHVWTKEEEATLVECLVELVSAGRWRSNNGTFRPCYLAQLEQMMAAKLPG------R 65

Query: 64  EFQGTPSSHNDGAASSGSSRKRKRSTTAADLNDIVENAMYMQQSHVKVISEWPKEQWSVE 123
            FQ T         SSGS +KR      AD+ D++  AM      ++ I+EWP      E
Sbjct: 66  LFQAT--------ISSGSKQKR-GGLRVADV-DLIHEAMEYVNGQLRAIAEWPSVTLQNE 125

Query: 124 SDLCERCVAELGKITYL 141
           + +C+  + +L  I  L
Sbjct: 126 TAVCQEVLCQLRVILEL 126

[Close]

BLAST of Sed0015712 vs. NCBI nr
Match: XP_038892629.1 (uncharacterized protein At2g29880-like [Benincasa hispida])

HSP 1 Score: 72.8 bits (177), Expect = 3.5e-09
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 3   GRNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTL 60
           G+  K  W+ +EDAKL+E+L+ LV+  GW+ DNGTFRP YL  LE  + E++PGC L
Sbjct: 51  GKKSKHVWSKVEDAKLVEALLYLVE-TGWRFDNGTFRPGYLQHLEQILHEKVPGCAL 106

[Close]

BLAST of Sed0015712 vs. NCBI nr
Match: XP_026662506.2 (uncharacterized protein LOC113463064 [Phoenix dactylifera])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-08
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 7   KRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTL 60
           KR WT  EDAKL+E L+ +V   GWKGDNG FRP +   LE  M++++PGC L
Sbjct: 221 KRIWTKTEDAKLVECLIKVVNAGGWKGDNGIFRPGFHQHLERMMEKKLPGCRL 273

[Close]

BLAST of Sed0015712 vs. ExPASy TrEMBL
Match: A0A5D3BTT4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001790 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.9e-10
Identity = 51/156 (32.69%), Postives = 74/156 (47.44%), Query Frame = 0


Query: 4   RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIP-GCTLGTK 63
           R  K +WT  E+A L+E L+ LV   GW+ DNGTF+P YLN+L   +  +IP G  + + 
Sbjct: 6   RLPKHNWTKEEEAGLVECLVELVNADGWRSDNGTFQPEYLNQLARMITFKIPAGVWVESF 65

Query: 64  EEFQGTPSSH-----NDGAASS-------GSSRKRKRSTTAADLNDIVENAMYMQQSHVK 123
            +     S+       D A  +        S  KRKR   AAD  DI+  A+      + 
Sbjct: 66  ADVGSNDSARYEAFVTDAALDTNFQLMYVSSGSKRKRGGQAADSGDILRTAIEYGNEQLN 125

Query: 124 VISEWPKEQWSVESDLCERCVAELGKITYLFDVEDC 147
            I+EWP  Q    S + +  V +L  I  L  ++ C
Sbjct: 126 CIAEWPVLQHQDASQIRQEVVRQLEAIPELTLMDRC 161

[Close]

BLAST of Sed0015712 vs. ExPASy TrEMBL
Match: A0A5D3DUT7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00950 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-09
Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = 0


Query: 4   RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTLGTKE 63
           R  K  WT  E+A L+E L+ LV    W+ +NGTFRP YL +LE  M  ++PG       
Sbjct: 6   REPKHVWTKEEEATLVECLVELVSAGRWRSNNGTFRPCYLAQLEQMMAAKLPG------R 65

Query: 64  EFQGTPSSHNDGAASSGSSRKRKRSTTAADLNDIVENAMYMQQSHVKVISEWPKEQWSVE 123
            FQ T         SSGS +KR      AD+ D++  AM      ++ I+EWP      E
Sbjct: 66  LFQAT--------ISSGSKQKR-GGLRVADV-DLIHEAMEYVNGQLRAIAEWPSVTLQNE 125

Query: 124 SDLCERCVAELGKITYL 141
           + +C+  + +L  I  L
Sbjct: 126 TAVCQEVLCQLRVILEL 126

[Close]

BLAST of Sed0015712 vs. ExPASy TrEMBL
Match: A0A5A7TD34 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00040 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-08
Identity = 49/152 (32.24%), Postives = 69/152 (45.39%), Query Frame = 0


Query: 4   RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTLGTKE 63
           R  K +WT  E+A L+E L+ LV   GW+ DNGTF+  Y+N+L   +  +IP    G  E
Sbjct: 6   RLPKHNWTKEEEAGLVECLVELVNAGGWRSDNGTFQLEYINQLARMITFKIPAG--GWVE 65

Query: 64  EFQGTPSSH--------NDGAASS-------GSSRKRKRSTTAADLNDIVENAMYMQQSH 123
            F    S+          D A  +        S  KRKR   AAD  D++  A+      
Sbjct: 66  SFADVGSNDPARYEAFVTDAALDTNFQLMYVSSRSKRKRGGQAADSGDVLRTAIEYGNEQ 125

Query: 124 VKVISEWPKEQWSVESDLCERCVAELGKITYL 141
           +  I+EWP  Q    S + +  V +L  I  L
Sbjct: 126 LNCIAEWPVLQHQDASQIRQEVVRQLEAIPEL 155

[Close]

BLAST of Sed0015712 vs. ExPASy TrEMBL
Match: A0A5A7UQK4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00310 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-08
Identity = 37/96 (38.54%), Postives = 47/96 (48.96%), Query Frame = 0


Query: 10  WTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTLGT-------- 69
           WT  E+  L+E LM  V + GWK DNGTFRPRYL +L   M E++PGC +          
Sbjct: 12  WTKEEEGTLVECLMEFVSMGGWKSDNGTFRPRYLAQLVRMMAEKLPGCQVRATTVIDCRI 71

Query: 70  ---KEEFQGTPSSHNDGAASSGSSRKRKRSTTAADL 95
              K  FQ      + GA + G + KR     A  L
Sbjct: 72  KTLKRTFQAIAEIRSPGAVALGGTMKRNSHPAAKGL 107

[Close]

BLAST of Sed0015712 vs. ExPASy TrEMBL
Match: A0A5A7SM12 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G001020 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-08
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 4  RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTL 60
          R  K +WT  E+A L+E L+ LV   GW+ DNGTFRP YLN+L   M  +IPGC +
Sbjct: 6  RLSKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPEYLNQLARMMAFKIPGCNI 61

The following BLAST results are available for this feature:

BLAST of Sed0015712 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902479.1	4.2e-10	54.39	uncharacterized protein At2g29880-like [Benincasa hispida]	[more]
TYK03073.1	1.2e-09	32.69	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0041796.1	2.1e-09	35.04	retrotransposon protein [Cucumis melo var. makuwa] >TYK27085.1 retrotransposon p...	[more]
XP_038892629.1	3.5e-09	52.63	uncharacterized protein At2g29880-like [Benincasa hispida]	[more]
XP_026662506.2	1.8e-08	54.72	uncharacterized protein LOC113463064 [Phoenix dactylifera]	[more]

BLAST of Sed0015712 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0015712 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BTT4	5.9e-10	32.69	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DUT7	1.0e-09	35.04	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TD34	2.5e-08	32.24	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UQK4	3.2e-08	38.54	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SM12	3.2e-08	51.79	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Sed0015712 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..85
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 4..62
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 4..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015712.1	Sed0015712.1	mRNA