Sed0013776 (gene) Chayote v1

Overview


Name	Sed0013776
Type	gene
Organism	Sechium edule (Chayote v1)
Description	transcription factor bHLH146-like
Location	LG11: 5877914 .. 5878638 (-)
RNA-Seq Expression	Sed0013776
Synteny	Sed0013776

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGAGCCTCTCCATTTCCCTCTCTTCACCAAATCTCATCTTTTTTTTTTCCTTTCTCTTTTCCAAAGCTCCATTGCTTTATCAAATTTCAAAGCTTTTTCCACCTACAATTCTTCAATATTTTTGTGTGAAAATATGGGAAGGCAAATTTTGAGTAAAAGAAAAAGGGTTTTTCCCCTTGACTCAAACAAACTTGCATACACCATGTTTGCAAGAAACTATGTCACACATTTGGAGACATCCTTAGCCAAAATTTCTTCAAATCCTTCTCTTCAACAACAACAACAAAATTTTCAAAAACTTGTGAAGTTTGAGGTTGACATGGCAATGGCTCAATCAGCAAGTGAATTTGAATGGGGCAATGCTCTTCAAAAGAAGCTTCTTCAAAGAGATCAAGTTGGCAATCATGGAAACAATGGCTTTGAATTTTCTCTCCAAAAAGTGAAATTTTCTCAAGAAAATTCAGAAGAAGAGAAAAGGATGGAAAATGGATTGATGAAGCTGAGGAAAATCTTACCAATTGAGGATTCTAATGGAGATTTGGAAGAAGATGATTTGTTGAAACAAACTGAAAGTTATATAAAATGTCTTGAGTTGCAGGTGAATGTTCTTAGATGTTTGGTTGATTCAAACACAAATTGATTTTGATCCTTTTTTCCCCCTTATTTTTTCTTGCTAATTTCTATGTGGAAATGAAAGAAATATTATATGAATTTGCAGCTA

mRNA sequence

AAAAAGAGCCTCTCCATTTCCCTCTCTTCACCAAATCTCATCTTTTTTTTTTCCTTTCTCTTTTCCAAAGCTCCATTGCTTTATCAAATTTCAAAGCTTTTTCCACCTACAATTCTTCAATATTTTTGTGTGAAAATATGGGAAGGCAAATTTTGAGTAAAAGAAAAAGGGTTTTTCCCCTTGACTCAAACAAACTTGCATACACCATGTTTGCAAGAAACTATGTCACACATTTGGAGACATCCTTAGCCAAAATTTCTTCAAATCCTTCTCTTCAACAACAACAACAAAATTTTCAAAAACTTGTGAAGTTTGAGGTTGACATGGCAATGGCTCAATCAGCAAGTGAATTTGAATGGGGCAATGCTCTTCAAAAGAAGCTTCTTCAAAGAGATCAAGTTGGCAATCATGGAAACAATGGCTTTGAATTTTCTCTCCAAAAAGTGAAATTTTCTCAAGAAAATTCAGAAGAAGAGAAAAGGATGGAAAATGGATTGATGAAGCTGAGGAAAATCTTACCAATTGAGGATTCTAATGGAGATTTGGAAGAAGATGATTTGTTGAAACAAACTGAAAGTTATATAAAATGTCTTGAGTTGCAGGTGAATGTTCTTAGATGTTTGGTTGATTCAAACACAAATTGATTTTGATCCTTTTTTCCCCCTTATTTTTTCTTGCTAATTTCTATGTGGAAATGAAAGAAATATTATATGAATTTGCAGCTA

Coding sequence (CDS)

ATGGGAAGGCAAATTTTGAGTAAAAGAAAAAGGGTTTTTCCCCTTGACTCAAACAAACTTGCATACACCATGTTTGCAAGAAACTATGTCACACATTTGGAGACATCCTTAGCCAAAATTTCTTCAAATCCTTCTCTTCAACAACAACAACAAAATTTTCAAAAACTTGTGAAGTTTGAGGTTGACATGGCAATGGCTCAATCAGCAAGTGAATTTGAATGGGGCAATGCTCTTCAAAAGAAGCTTCTTCAAAGAGATCAAGTTGGCAATCATGGAAACAATGGCTTTGAATTTTCTCTCCAAAAAGTGAAATTTTCTCAAGAAAATTCAGAAGAAGAGAAAAGGATGGAAAATGGATTGATGAAGCTGAGGAAAATCTTACCAATTGAGGATTCTAATGGAGATTTGGAAGAAGATGATTTGTTGAAACAAACTGAAAGTTATATAAAATGTCTTGAGTTGCAGGTGAATGTTCTTAGATGTTTGGTTGATTCAAACACAAATTGA

Protein sequence

MGRQILSKRKRVFPLDSNKLAYTMFARNYVTHLETSLAKISSNPSLQQQQQNFQKLVKFEVDMAMAQSASEFEWGNALQKKLLQRDQVGNHGNNGFEFSLQKVKFSQENSEEEKRMENGLMKLRKILPIEDSNGDLEEDDLLKQTESYIKCLELQVNVLRCLVDSNTN

Homology

[Close]

BLAST of Sed0013776 vs. NCBI nr
Match: XP_023538247.1 (transcription factor bHLH146-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.9 bits (572), Expect = 5.0e-55
Identity = 128/177 (72.32%), Postives = 143/177 (80.79%), Query Frame = 0


Query: 1   MGRQILSKRKRVFPLDSNKLAYTMFARNYVTHLETSLAKISSNPSLQQQQQNFQKLVKFE 60
           MGRQIL KRKRV  L+ NKLAYTMFARNYV +L TSL KIS +   Q Q+QNFQKLVKFE
Sbjct: 1   MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQ-QHQEQNFQKLVKFE 60

Query: 61  VDMAMAQSASEFEWGNALQKKLLQRDQVGNHGNNGFEFSLQKVKFSQENSE--------- 120
           VDMAMAQSA+EF WGNAL+KKLLQR+    +G+NGF FSLQ VKFSQEN E         
Sbjct: 61  VDMAMAQSATEFSWGNALKKKLLQRED--GNGSNGFGFSLQTVKFSQENLEREHEEHEER 120

Query: 121 EEKRMENGLMKLRKILPIEDSNGDLEEDDLLKQTESYIKCLELQVNVLRCLVDSNTN 169
           +E ++ENGLMKLRKI+P   SNG+LEEDDL KQTESYIKCLELQVNVLRCLVD+NTN
Sbjct: 121 KEPKIENGLMKLRKIVP-GGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN 173

[Close]

BLAST of Sed0013776 vs. NCBI nr
Match: XP_022938205.1 (transcription factor bHLH146-like [Cucurbita moschata])

HSP 1 Score: 223.8 bits (569), Expect = 1.1e-54
Identity = 127/180 (70.56%), Postives = 144/180 (80.00%), Query Frame = 0


Query: 1   MGRQILSKRKRVFPLDSNKLAYTMFARNYVTHLETSLAKISSNPSLQQQQQNFQKLVKFE 60
           MGRQIL KRKRV  L+ NKLAYTMFARNYV +L TSL KIS +   Q Q+QNFQKLVKFE
Sbjct: 1   MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQ-QHQEQNFQKLVKFE 60

Query: 61  VDMAMAQSASEFEWGNALQKKLLQRDQVGNHGNNGFEFSLQKVKFSQENSE--------- 120
           VDMAMAQSA+EF WGNAL+KKLLQR+    +G+NGF  SLQ+VKFS+EN E         
Sbjct: 61  VDMAMAQSATEFSWGNALKKKLLQRED--GNGSNGFGLSLQRVKFSRENLEREDEEHEER 120

Query: 121 ---EEKRMENGLMKLRKILPIEDSNGDLEEDDLLKQTESYIKCLELQVNVLRCLVDSNTN 169
              EE+++ENGLMKLRKI+P   SNG+LEEDDL KQTESYIKCLELQVNVLRCLVD+NTN
Sbjct: 121 EEHEERKIENGLMKLRKIVP-GGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN 176

[Close]

BLAST of Sed0013776 vs. NCBI nr
Match: KAG6586090.1 (Transcription factor basic helix-loop-helix 146, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 220.7 bits (561), Expect = 9.5e-54
Identity = 125/180 (69.44%), Postives = 144/180 (80.00%), Query Frame = 0


Query: 1   MGRQILSKRKRVFPLDSNKLAYTMFARNYVTHLETSLAKISSNPSLQQQQQNFQKLVKFE 60
           MGRQIL KRKRV  L+ NKLAYTMFARNYV +L TSL KIS +   Q Q+Q+FQKLVKFE
Sbjct: 1   MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQ-QHQEQSFQKLVKFE 60

Query: 61  VDMAMAQSASEFEWGNALQKKLLQRDQVGNHGNNGFEFSLQKVKFSQENSE--------- 120
           VDMAMAQSA+EF WGNAL+KKLLQR+    +G+NGF  SLQ+VKF++EN E         
Sbjct: 61  VDMAMAQSATEFSWGNALKKKLLQRED--GNGSNGFGLSLQRVKFARENLEREDEEHEER 120

Query: 121 ---EEKRMENGLMKLRKILPIEDSNGDLEEDDLLKQTESYIKCLELQVNVLRCLVDSNTN 169
              EE+++ENGLMKLRKI+P   SNG+LEEDDL KQTESYIKCLELQVNVLRCLVD+NTN
Sbjct: 121 EEHEERKIENGLMKLRKIVP-GGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN 176

[Close]

BLAST of Sed0013776 vs. NCBI nr
Match: XP_022969610.1 (transcription factor bHLH146-like [Cucurbita maxima])

HSP 1 Score: 217.2 bits (552), Expect = 1.1e-52
Identity = 127/183 (69.40%), Postives = 144/183 (78.69%), Query Frame = 0


Query: 1   MGRQILSKRKRVFPLDSNKLAYTMFARNYVTHLETSLAKISSNPSLQQQQQNFQKLVKFE 60
           MGRQIL KRKRV  L+ +KLAYTMFARNYV +L TSL KIS +   Q QQQNFQKLVKFE
Sbjct: 1   MGRQILRKRKRVLSLEPDKLAYTMFARNYVKYLMTSLPKISHHHQ-QHQQQNFQKLVKFE 60

Query: 61  VDMAMAQSASEFEWGNALQKKLLQRDQVGNHGNNGFEFSLQKVKFSQENSE--------- 120
           VDMAMAQSA+EF WGNAL+KKLLQR+   ++G+NGF FSL  VKFS+EN E         
Sbjct: 61  VDMAMAQSATEFSWGNALKKKLLQRED--DNGSNGFGFSL-PVKFSRENLEREDEEHEEH 120

Query: 121 ------EEKRMENGLMKLRKILPIEDSNGDLEEDDLLKQTESYIKCLELQVNVLRCLVDS 169
                 EE+++ENGLMKLRKI+P   SNG+LEEDDL KQTESYIKCLELQVNVLRCLVD+
Sbjct: 121 EEHEEREERKIENGLMKLRKIVP-GGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDT 178

[Close]

BLAST of Sed0013776 vs. NCBI nr
Match: XP_022153354.1 (transcription factor bHLH146 [Momordica charantia])

HSP 1 Score: 208.4 bits (529), Expect = 4.9e-50
Identity = 120/178 (67.42%), Postives = 139/178 (78.09%), Query Frame = 0


Query: 1   MGRQILSKRKRVFPLDSNKLAYTMFARNYVTHLETSLAKISSNPSLQQQQQNFQKLVKFE 60
           MGRQI+ KR+RVF L+ NKL Y MFARNY  +L  SL+KIS N       QN QK+VKFE
Sbjct: 1   MGRQIVRKRRRVFSLEPNKLVYIMFARNYAKNLMASLSKISPN------HQNLQKVVKFE 60

Query: 61  VDMAMAQSASEFEWGNALQKKLLQRDQVGN-HGNNGFEFSLQKVKFSQENSEEE----KR 120
           VDMAMA SASEF WG+AL++KLLQ+ + GN +G N F+FSLQ +KFS+E  EEE    K+
Sbjct: 61  VDMAMALSASEFAWGHALKQKLLQKQENGNGNGRNSFDFSLQTLKFSREKEEEEEEDKKK 120

Query: 121 MENGLMKLRKILP----IEDSNGD-LEEDDLLKQTESYIKCLELQVNVLRCLVDSNTN 169
           MENGL+KLRKILP      DSNGD LEEDDLLKQTESYIKCLELQVNVLRCLVD+NT+
Sbjct: 121 MENGLVKLRKILPGGENNNDSNGDLLEEDDLLKQTESYIKCLELQVNVLRCLVDTNTD 172

[Close]

BLAST of Sed0013776 vs. ExPASy Swiss-Prot
Match: Q9SUM5 (Transcription factor bHLH146 OS=Arabidopsis thaliana OX=3702 GN=BHLH146 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.7e-17
Identity = 57/167 (34.13%), Postives = 90/167 (53.89%), Query Frame = 0


Query: 1   MGRQILSKRKRVFPLDSNKLAYTMFARNYVTHLETSLAKISSNPSLQQQQQNFQKLVKFE 60
           M RQI++++KRVF L+ NK    +F R Y +HL  +L K++ N +  +Q       VK E
Sbjct: 1   MERQIINRKKRVFSLEPNKNPSAVFTRKYTSHLVPALKKLNMNKNSSKQ------TVKHE 60

Query: 61  VDMAMAQSASEFEWGNALQKKLLQRDQVGNHGNNGFEFSLQKVKFSQENSEEEKRMENGL 120
           VDMA+A SA EF W   L +KL          ++  +      +  +E   EE  +E  L
Sbjct: 61  VDMALALSAQEFAWSRFLLQKLSSSSNPTTTTSSSSDGIRILERPDKEGGNEEGGIEERL 120

Query: 121 MKLRKILPIEDSNGDLEEDDLLKQTESYIKCLELQVNVLRCLVDSNT 168
            +L+K+LP      ++  +++L +  +YIKCLELQ   L+ +V  +T
Sbjct: 121 RELKKLLP---GGEEMNVEEMLSEIGNYIKCLELQTIALKSIVQDST 158

[Close]

BLAST of Sed0013776 vs. ExPASy Swiss-Prot
Match: Q9SKX1 (Transcription factor IBH1 OS=Arabidopsis thaliana OX=3702 GN=IBH1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.7e-06
Identity = 45/143 (31.47%), Postives = 69/143 (48.25%), Query Frame = 0


Query: 29  YVTHLETSLAKI-SSNPSLQQQQQNF--QKLVKFE-VDMAMAQSASEFEWGNALQKKLLQ 88
           +  H   SL+ +   NP     Q+N+  +K+ K   V MA A   S   W  AL ++  +
Sbjct: 18  FAFHFLQSLSNLRKQNPFDTPDQKNYRVRKIKKAAYVSMARAAGGSSRLWSRALLRRADK 77

Query: 89  RDQVGNHGNNGFEFSLQKVKFSQENSEEEKR---MENGLMKLRKILPIEDSNGDLEEDDL 148
            D      N    FS +K K S +     +R   +E    +LR ++P     G +E   L
Sbjct: 78  DD------NKIVRFSRRKWKISSKRRRSNQRAPVVEEAAERLRNLVP---GGGGMETSKL 137

Query: 149 LKQTESYIKCLELQVNVLRCLVD 165
           +++T  YIKCL +QV V++CLVD
Sbjct: 138 MEETAHYIKCLSMQVKVMQCLVD 151

[Close]

BLAST of Sed0013776 vs. ExPASy TrEMBL
Match: A0A6J1FJ33 (transcription factor bHLH146-like OS=Cucurbita moschata OX=3662 GN=LOC111444354 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 5.4e-55
Identity = 127/180 (70.56%), Postives = 144/180 (80.00%), Query Frame = 0


Query: 1   MGRQILSKRKRVFPLDSNKLAYTMFARNYVTHLETSLAKISSNPSLQQQQQNFQKLVKFE 60
           MGRQIL KRKRV  L+ NKLAYTMFARNYV +L TSL KIS +   Q Q+QNFQKLVKFE
Sbjct: 1   MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQ-QHQEQNFQKLVKFE 60

Query: 61  VDMAMAQSASEFEWGNALQKKLLQRDQVGNHGNNGFEFSLQKVKFSQENSE--------- 120
           VDMAMAQSA+EF WGNAL+KKLLQR+    +G+NGF  SLQ+VKFS+EN E         
Sbjct: 61  VDMAMAQSATEFSWGNALKKKLLQRED--GNGSNGFGLSLQRVKFSRENLEREDEEHEER 120

Query: 121 ---EEKRMENGLMKLRKILPIEDSNGDLEEDDLLKQTESYIKCLELQVNVLRCLVDSNTN 169
              EE+++ENGLMKLRKI+P   SNG+LEEDDL KQTESYIKCLELQVNVLRCLVD+NTN
Sbjct: 121 EEHEERKIENGLMKLRKIVP-GGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN 176

[Close]

BLAST of Sed0013776 vs. ExPASy TrEMBL
Match: A0A6J1I0E6 (transcription factor bHLH146-like OS=Cucurbita maxima OX=3661 GN=LOC111468586 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 5.1e-53
Identity = 127/183 (69.40%), Postives = 144/183 (78.69%), Query Frame = 0


Query: 1   MGRQILSKRKRVFPLDSNKLAYTMFARNYVTHLETSLAKISSNPSLQQQQQNFQKLVKFE 60
           MGRQIL KRKRV  L+ +KLAYTMFARNYV +L TSL KIS +   Q QQQNFQKLVKFE
Sbjct: 1   MGRQILRKRKRVLSLEPDKLAYTMFARNYVKYLMTSLPKISHHHQ-QHQQQNFQKLVKFE 60

Query: 61  VDMAMAQSASEFEWGNALQKKLLQRDQVGNHGNNGFEFSLQKVKFSQENSE--------- 120
           VDMAMAQSA+EF WGNAL+KKLLQR+   ++G+NGF FSL  VKFS+EN E         
Sbjct: 61  VDMAMAQSATEFSWGNALKKKLLQRED--DNGSNGFGFSL-PVKFSRENLEREDEEHEEH 120

Query: 121 ------EEKRMENGLMKLRKILPIEDSNGDLEEDDLLKQTESYIKCLELQVNVLRCLVDS 169
                 EE+++ENGLMKLRKI+P   SNG+LEEDDL KQTESYIKCLELQVNVLRCLVD+
Sbjct: 121 EEHEEREERKIENGLMKLRKIVP-GGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDT 178

[Close]

BLAST of Sed0013776 vs. ExPASy TrEMBL
Match: A0A6J1DIU0 (transcription factor bHLH146 OS=Momordica charantia OX=3673 GN=LOC111020869 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.4e-50
Identity = 120/178 (67.42%), Postives = 139/178 (78.09%), Query Frame = 0


Query: 1   MGRQILSKRKRVFPLDSNKLAYTMFARNYVTHLETSLAKISSNPSLQQQQQNFQKLVKFE 60
           MGRQI+ KR+RVF L+ NKL Y MFARNY  +L  SL+KIS N       QN QK+VKFE
Sbjct: 1   MGRQIVRKRRRVFSLEPNKLVYIMFARNYAKNLMASLSKISPN------HQNLQKVVKFE 60

Query: 61  VDMAMAQSASEFEWGNALQKKLLQRDQVGN-HGNNGFEFSLQKVKFSQENSEEE----KR 120
           VDMAMA SASEF WG+AL++KLLQ+ + GN +G N F+FSLQ +KFS+E  EEE    K+
Sbjct: 61  VDMAMALSASEFAWGHALKQKLLQKQENGNGNGRNSFDFSLQTLKFSREKEEEEEEDKKK 120

Query: 121 MENGLMKLRKILP----IEDSNGD-LEEDDLLKQTESYIKCLELQVNVLRCLVDSNTN 169
           MENGL+KLRKILP      DSNGD LEEDDLLKQTESYIKCLELQVNVLRCLVD+NT+
Sbjct: 121 MENGLVKLRKILPGGENNNDSNGDLLEEDDLLKQTESYIKCLELQVNVLRCLVDTNTD 172

[Close]

BLAST of Sed0013776 vs. ExPASy TrEMBL
Match: A0A0A0LJA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060350 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 9.3e-47
Identity = 120/187 (64.17%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 1   MGRQILSKRKRVFPLDSNKLAYTMFARNYVTHLETSLAKISSNPSLQQQQQNFQKLVKFE 60
           M R+++ K +RVF ++ +K+AYTMF RNYV HL TSL KIS     QQQQQNF+KLVKFE
Sbjct: 1   MVRKMVRKGRRVFSIEPSKVAYTMFERNYVKHLMTSLVKISH----QQQQQNFRKLVKFE 60

Query: 61  VDMAMAQSASEFEWGNALQKKLLQRDQ--VGNHGNNGFEFSLQKV-KFSQEN-------- 120
           VDMAMAQSASEF WG AL+KKLLQRDQ  +GN   NGF+FS+Q V K SQEN        
Sbjct: 61  VDMAMAQSASEFSWGIALKKKLLQRDQQVLGNGNENGFDFSVQTVKKTSQENLGNEEEDH 120

Query: 121 -----SEEEKRMENGLMKLRKILPIEDS---NGDL-EEDDLLKQTESYIKCLELQVNVLR 168
                 EEE+ MENGLMKLRKI+P  D+    G+L EEDDLLKQTESY+KCLELQVNVLR
Sbjct: 121 HHEEEEEEEEEMENGLMKLRKIIPGGDNFSIGGNLDEEDDLLKQTESYVKCLELQVNVLR 180

[Close]

BLAST of Sed0013776 vs. ExPASy TrEMBL
Match: A0A1S4DZN3 (uncharacterized protein At4g30180 OS=Cucumis melo OX=3656 GN=LOC103492789 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.1e-46
Identity = 118/193 (61.14%), Postives = 135/193 (69.95%), Query Frame = 0


Query: 1   MGRQILSKRKRVFPLDSNKLAYTMFARNYVTHLETSLAKISSNPSLQQQQQNFQKLVKFE 60
           M R+I+ K +RVF ++ NK+AYTMFARNYV HL TSL KIS     QQQQQNFQKLV+FE
Sbjct: 1   MVRKIVRKGRRVFSIEPNKVAYTMFARNYVKHLMTSLVKISH----QQQQQNFQKLVRFE 60

Query: 61  VDMAMAQSASEFEWGNALQKKLLQRDQ----VGNHGNNGFEFSLQKVK------------ 120
           VDMAMAQSASEF WG AL+KKLLQRD     +GN   NGF+FSLQ +K            
Sbjct: 61  VDMAMAQSASEFSWGIALKKKLLQRDDQQEVLGNGSENGFDFSLQTMKKISHKNLGNEEE 120

Query: 121 -----FSQENSEEEKRMENGLMKLRKILPIED-----SNGDLEEDDLLKQTESYIKCLEL 168
                  +E  EEE+ MENGLMKLRKI+P  D      N   EEDDLLKQTESY+KCLEL
Sbjct: 121 DHHEDEEEEEEEEEEEMENGLMKLRKIIPGGDDFSIGGNNLDEEDDLLKQTESYVKCLEL 180

[Close]

BLAST of Sed0013776 vs. TAIR 10
Match: AT2G18969.1 (BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT4G30180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 98.6 bits (244), Expect = 5.1e-21
Identity = 70/178 (39.33%), Postives = 104/178 (58.43%), Query Frame = 0


Query: 1   MGRQILSKRKRVFPLDSNKLAYTMFARNYVTHLETSLAKISSNPSLQQ-QQQNFQKLVKF 60
           M RQI++KRKRVF L  NK    +FAR YV+HL  +L KI+ N S  +  +Q+ ++ VK 
Sbjct: 1   MERQIINKRKRVFSLQPNKNPKAVFARRYVSHLVPALKKINMNKSSSKTNKQSLEQTVKH 60

Query: 61  EVDMAMAQSASEFEWGNALQKKLLQR--DQVGNHGNNGFEFSLQKVKFS-----QENSEE 120
           EVDMA A SA EF W   LQ+KLL    D   +  ++  E   +  K       Q++ EE
Sbjct: 61  EVDMAFALSAQEFAWSRFLQQKLLSSPYDDPISTSSSPSEILERSSKRQGGEKHQDSDEE 120

Query: 121 EK--RMENGLMKLRKILPIEDSNGDLEEDDLLKQTESYIKCLELQVNVLRCLVDSNTN 169
           E+   ++  L +L+K+LP      ++  +++L +  SYI CLELQ+ VL+ +V  NT+
Sbjct: 121 EEGGEIKKRLKELQKLLP---GGEEMNMEEILSEIGSYIVCLELQMIVLKSIVQDNTS 175

[Close]

BLAST of Sed0013776 vs. TAIR 10
Match: AT4G30180.1 (sequence-specific DNA binding transcription factors;transcription regulators )

HSP 1 Score: 88.2 bits (217), Expect = 6.9e-18
Identity = 57/167 (34.13%), Postives = 90/167 (53.89%), Query Frame = 0


Query: 1   MGRQILSKRKRVFPLDSNKLAYTMFARNYVTHLETSLAKISSNPSLQQQQQNFQKLVKFE 60
           M RQI++++KRVF L+ NK    +F R Y +HL  +L K++ N +  +Q       VK E
Sbjct: 1   MERQIINRKKRVFSLEPNKNPSAVFTRKYTSHLVPALKKLNMNKNSSKQ------TVKHE 60

Query: 61  VDMAMAQSASEFEWGNALQKKLLQRDQVGNHGNNGFEFSLQKVKFSQENSEEEKRMENGL 120
           VDMA+A SA EF W   L +KL          ++  +      +  +E   EE  +E  L
Sbjct: 61  VDMALALSAQEFAWSRFLLQKLSSSSNPTTTTSSSSDGIRILERPDKEGGNEEGGIEERL 120

Query: 121 MKLRKILPIEDSNGDLEEDDLLKQTESYIKCLELQVNVLRCLVDSNT 168
            +L+K+LP      ++  +++L +  +YIKCLELQ   L+ +V  +T
Sbjct: 121 RELKKLLP---GGEEMNVEEMLSEIGNYIKCLELQTIALKSIVQDST 158

[Close]

BLAST of Sed0013776 vs. TAIR 10
Match: AT2G43060.1 (ILI1 binding bHLH 1 )

HSP 1 Score: 52.0 bits (123), Expect = 5.4e-07
Identity = 45/143 (31.47%), Postives = 69/143 (48.25%), Query Frame = 0


Query: 29  YVTHLETSLAKI-SSNPSLQQQQQNF--QKLVKFE-VDMAMAQSASEFEWGNALQKKLLQ 88
           +  H   SL+ +   NP     Q+N+  +K+ K   V MA A   S   W  AL ++  +
Sbjct: 18  FAFHFLQSLSNLRKQNPFDTPDQKNYRVRKIKKAAYVSMARAAGGSSRLWSRALLRRADK 77

Query: 89  RDQVGNHGNNGFEFSLQKVKFSQENSEEEKR---MENGLMKLRKILPIEDSNGDLEEDDL 148
            D      N    FS +K K S +     +R   +E    +LR ++P     G +E   L
Sbjct: 78  DD------NKIVRFSRRKWKISSKRRRSNQRAPVVEEAAERLRNLVP---GGGGMETSKL 137

Query: 149 LKQTESYIKCLELQVNVLRCLVD 165
           +++T  YIKCL +QV V++CLVD
Sbjct: 138 MEETAHYIKCLSMQVKVMQCLVD 151

The following BLAST results are available for this feature:

BLAST of Sed0013776 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538247.1	5.0e-55	72.32	transcription factor bHLH146-like [Cucurbita pepo subsp. pepo]	[more]
XP_022938205.1	1.1e-54	70.56	transcription factor bHLH146-like [Cucurbita moschata]	[more]
KAG6586090.1	9.5e-54	69.44	Transcription factor basic helix-loop-helix 146, partial [Cucurbita argyrosperma...	[more]
XP_022969610.1	1.1e-52	69.40	transcription factor bHLH146-like [Cucurbita maxima]	[more]
XP_022153354.1	4.9e-50	67.42	transcription factor bHLH146 [Momordica charantia]	[more]

BLAST of Sed0013776 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SUM5	9.7e-17	34.13	Transcription factor bHLH146 OS=Arabidopsis thaliana OX=3702 GN=BHLH146 PE=2 SV=...	[more]
Q9SKX1	7.7e-06	31.47	Transcription factor IBH1 OS=Arabidopsis thaliana OX=3702 GN=IBH1 PE=1 SV=1	[more]

BLAST of Sed0013776 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJ33	5.4e-55	70.56	transcription factor bHLH146-like OS=Cucurbita moschata OX=3662 GN=LOC111444354 ...	[more]
A0A6J1I0E6	5.1e-53	69.40	transcription factor bHLH146-like OS=Cucurbita maxima OX=3661 GN=LOC111468586 PE...	[more]
A0A6J1DIU0	2.4e-50	67.42	transcription factor bHLH146 OS=Momordica charantia OX=3673 GN=LOC111020869 PE=4...	[more]
A0A0A0LJA7	9.3e-47	64.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060350 PE=4 SV=1	[more]
A0A1S4DZN3	2.1e-46	61.14	uncharacterized protein At4g30180 OS=Cucumis melo OX=3656 GN=LOC103492789 PE=4 S...	[more]

BLAST of Sed0013776 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18969.1	5.1e-21	39.33	BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transc...	[more]
AT4G30180.1	6.9e-18	34.13	sequence-specific DNA binding transcription factors;transcription regulators	[more]
AT2G43060.1	5.4e-07	31.47	ILI1 binding bHLH 1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 107..166
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 3..109
None	No IPR available	PANTHER	PTHR33124:SF42	TRANSCRIPTION FACTOR BHLH146	coord: 107..166
None	No IPR available	PANTHER	PTHR33124:SF42	TRANSCRIPTION FACTOR BHLH146	coord: 3..109
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 114..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013776.1	Sed0013776.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity