Sed0009666 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGCAACAGCCCAAGAAAAATTTATGGAAACCAGAAGAAGATTTGAGTCCCCAAGGGGTGACACAGTGGTTGAAGACTTGGGCTTTGAGGGTATGCTCCCCTCAAGGTTCCAGGTTCGAGACTCAGATGTGACATTACTCCTTCGATGTTTCTCAGTGCCTGGCCTAGGAATAGACGTGGTTACTCTTGTTTCAAACAAAAAAGAAGAAGATTTGATCCTCAGAAACTTTGTGGAAACTCATGGTGAAGGGAATTGGGCAACTGTCTCCCAGGAATCAGGTAAAAACCTTTTTTTTTACTTGCCAAATCCTCCCATCTTTGTCTCACTGTCTGTGGAGTAGAGTTTTGACCAATGTATTAAAAGACGAAAGACGCGTTTCTCTAGAAGAGGTAAAGGTGCAAGCCTCAAGGAATATGAGATGTAAGACTCGATTTAAATTAAAAACATCATACAAGTCTTAAATTTGGGTAAACAATTATGACAAAATATAGTACTTATATAAGAGTACAAAAAAAAATCACACTCACAATTGCCTCTTAAACAAAATTCCTAAATTGATATCTTTAATGTCACAGCCATTATGTAACATCACTAGTATGGTTGTATTTTTTAGGAATAAGAAACAATTTCATCAGCGAAGAAAGGAGAAATCTCTTACCACCACCTATATTGAATGCAATAAAGAACTCCAAAAAGAGATGAAAAACTGGCCAATAAAATGTGACCTTGAAATGATTGTAGGTCTTTCTAACAAAAGAATTTGTAAAATTCTTTTATTGAATGGATGATTAAACCTTGTTGGTTGATAAAATTAAATTTACCCCGACCCACGAACTTAAGTTTTTGGGTTGATTGGTGATTTAACATAATTCCAAATGGTATCATAGCAGAAGGTTCTGAGTTCGAATCTCTAGCATATCGTTTCTTCCCCAATTAAAATTAAATTCCATTTGTAAGGCATTTCTCAAATTTCTAAGCCCGCAAGTGGGGGGGAGTGTTGGTTGATATAATTAAATTTATCCCAACCCACGAGCTTAAACTTTTGGGTCGATTGATGATTTAATATAATTCAACAAACCTAAACATAAAGTCACGAACCAACTGCTCTTACTTTCCAAAGCTTACATTATCATTCAACTAATAGGATTTATGGCTGAGTTATTCTATAATTTTTTTGTCTTCAATGTTTTTAAAGCGCTAGTAAAAGAAACCCCAATATTTTTTAAGAATGGAGAAAACTAAACTATTCTTCTAATCATTATATGAGACATTGAGACTTAGCATGTTTTTCAGAGGCGTAAGCCTCTTCTGAACAAAAGGAATAAGCTTCGAAGCTAAAAATTAGAGTCTTGCTTCAAAGGAATAAGCTAAAAATCATTGCCCAGAACTCTATACCAGTGACAAAGGACGGATTTGAAAAAAAATAAGTTGTGTATCAGAAATTATTTTTTTCAATTATGTGTCCATTGCGTTCCTGCCCTATCACTCGGGTTTGATACGAGGTGGGAAAAGCTGCAGGCTAAGATGGAAGAACTACCTCATGCCTAATATAAAACATGGGGGCATGTCCAAAGAGGAAGAGGACCTAATTATCCGTATGCATAAACTTTTAGGCAATAGGTCAGTTTGCAATTGCATTGCATTAAACTATAAAGCTTAATCAATACTTACAGTAAAGAGAGTAAGCTGAATTTTCAACTCTGTTACTTCTTCCATCAGATGGTCACTAATTGCCGGTCGTCTCCCTGGTCGAACTGATAATGAAGTGAAGAACTACTGGAATACCCATTTGAATAGCCTGCAAGATAAAAAAAAAAAAAAAAAAGCTAATGACTCAAACAGCTGCAAGACAAATGATGACGTCGACGATGCCGATGGAAATAATAAGAAGCAGAAGAAAGTTATCAATCAGACTATCTATCCACAACCACTAATATGCAGTGACAACAGGACAGATCTGGCACATGATATAAAGAGAAGAAACCGGGAAGAGAACAGAGAAGTTACAGATACTTGGAATATGGATTATATAACAAGTTCTCATTATAATATAAACTATCCAGTGGTACCTGCACATAACATGGTATTTAACTTTGACGACGAACCTTACTTTGACGACGAACCTTACTTTGACCGCCTTGATCCCTTATTCCTGTTTGAAGCATTTGCAAGCAGTAGTGTTGATCCATCACTGGAGAACATGTAA ATGAAGCAACAGCCCAAGAAAAATTTATGGAAACCAGAAGAAGATTTGAGTCCCCAAGGGGTGACACAAAACTTTGTGGAAACTCATGGTGAAGGGAATTGGGCAACTGTCTCCCAGGAATCAGCTAATGACTCAAACAGCTGCAAGACAAATGATGACGTCGACGATGCCGATGGAAATAATAAGAAGCAGAAGAAAGTTATCAATCAGACTATCTATCCACAACCACTAATATGCAGTGACAACAGGACAGATCTGGCACATGATATAAAGAGAAGAAACCGGGAAGAGAACAGAGAAGTTACAGATACTTGGAATATGGATTATATAACAAGTTCTCATTATAATATAAACTATCCAGTGGTACCTGCACATAACATGGTATTTAACTTTGACGACGAACCTTACTTTGACGACGAACCTTACTTTGACCGCCTTGATCCCTTATTCCTGTTTGAAGCATTTGCAAGCAGTAGTGTTGATCCATCACTGGAGAACATGTAA ATGAAGCAACAGCCCAAGAAAAATTTATGGAAACCAGAAGAAGATTTGAGTCCCCAAGGGGTGACACAAAACTTTGTGGAAACTCATGGTGAAGGGAATTGGGCAACTGTCTCCCAGGAATCAGCTAATGACTCAAACAGCTGCAAGACAAATGATGACGTCGACGATGCCGATGGAAATAATAAGAAGCAGAAGAAAGTTATCAATCAGACTATCTATCCACAACCACTAATATGCAGTGACAACAGGACAGATCTGGCACATGATATAAAGAGAAGAAACCGGGAAGAGAACAGAGAAGTTACAGATACTTGGAATATGGATTATATAACAAGTTCTCATTATAATATAAACTATCCAGTGGTACCTGCACATAACATGGTATTTAACTTTGACGACGAACCTTACTTTGACGACGAACCTTACTTTGACCGCCTTGATCCCTTATTCCTGTTTGAAGCATTTGCAAGCAGTAGTGTTGATCCATCACTGGAGAACATGTAA MKQQPKKNLWKPEEDLSPQGVTQNFVETHGEGNWATVSQESANDSNSCKTNDDVDDADGNNKKQKKVINQTIYPQPLICSDNRTDLAHDIKRRNREENREVTDTWNMDYITSSHYNINYPVVPAHNMVFNFDDEPYFDDEPYFDRLDPLFLFEAFASSSVDPSLENM Homology
BLAST of Sed0009666 vs. NCBI nr
Match: XP_004139409.1 (transcription factor WER [Cucumis sativus]) HSP 1 Score: 207.2 bits (526), Expect = 1.1e-49 Identity = 123/245 (50.20%), Postives = 135/245 (55.10%), Query Frame = 0
BLAST of Sed0009666 vs. NCBI nr
Match: XP_038889962.1 (transcription repressor MYB5 [Benincasa hispida]) HSP 1 Score: 203.8 bits (517), Expect = 1.2e-48 Identity = 125/245 (51.02%), Postives = 137/245 (55.92%), Query Frame = 0
BLAST of Sed0009666 vs. NCBI nr
Match: KAG7030370.1 (Transcription factor MYB82, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 188.3 bits (477), Expect = 5.2e-44 Identity = 118/245 (48.16%), Postives = 131/245 (53.47%), Query Frame = 0
BLAST of Sed0009666 vs. NCBI nr
Match: KAG6599384.1 (Transcription factor MYB82, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 188.3 bits (477), Expect = 5.2e-44 Identity = 118/245 (48.16%), Postives = 131/245 (53.47%), Query Frame = 0
BLAST of Sed0009666 vs. NCBI nr
Match: XP_022965906.1 (transcription factor WER-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 185.7 bits (470), Expect = 3.4e-43 Identity = 116/245 (47.35%), Postives = 132/245 (53.88%), Query Frame = 0
BLAST of Sed0009666 vs. ExPASy Swiss-Prot
Match: Q9LTF7 (Transcription factor MYB82 OS=Arabidopsis thaliana OX=3702 GN=MYB82 PE=1 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 9.3e-04 Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 0
BLAST of Sed0009666 vs. ExPASy TrEMBL
Match: A0A0A0LF88 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G007440 PE=4 SV=1) HSP 1 Score: 241.5 bits (615), Expect = 2.5e-60 Identity = 123/167 (73.65%), Postives = 135/167 (80.84%), Query Frame = 0
BLAST of Sed0009666 vs. ExPASy TrEMBL
Match: A0A6J1HMX7 (transcription factor WER-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465651 PE=4 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 1.6e-43 Identity = 116/245 (47.35%), Postives = 132/245 (53.88%), Query Frame = 0
BLAST of Sed0009666 vs. ExPASy TrEMBL
Match: A0A6J1CPW3 (transcription factor MYB82 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013052 PE=4 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 1.7e-40 Identity = 111/245 (45.31%), Postives = 126/245 (51.43%), Query Frame = 0
BLAST of Sed0009666 vs. ExPASy TrEMBL
Match: A0A5D3BGT2 (Transcription factor WER-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00730 PE=4 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 2.1e-38 Identity = 91/145 (62.76%), Postives = 104/145 (71.72%), Query Frame = 0
BLAST of Sed0009666 vs. ExPASy TrEMBL
Match: A0A1S3C427 (transcription factor WER-like OS=Cucumis melo OX=3656 GN=LOC103496778 PE=4 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 2.1e-38 Identity = 91/145 (62.76%), Postives = 104/145 (71.72%), Query Frame = 0
BLAST of Sed0009666 vs. TAIR 10
Match: AT5G52600.1 (myb domain protein 82 ) HSP 1 Score: 45.1 bits (105), Expect = 6.6e-05 Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|