Moc09g15370.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g15370.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr9: 13005330 .. 13007016 (+)
Sequence length	588
RNA-Seq Expression	Moc09g15370.1
Synteny	Moc09g15370.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCGGCCTCCCGATCCGAGAGGGACGCGACGCGAGATGATGATGGGTCAACCGCGACTGGCGCAGCTGGTGGAACTGCTGCTTTCGCTCGGTGAATAAGAATAAGTCCTCAAATTGTTCTTTGGATAAACGACTGGATTTTGATCTTCTACTTCATTCCTATCTGCTTCGTGGATTAAGCGGTGGTGGTGCCTCTCCCACTGCTTATTGGTGGGTTCGAATATGGCACAGGAGTTGCTGACTTCATTCAGGTGGACACTGCAATTAGGGCTCGATCGAATATCCAAGAGATGACTTGTATACCAACTGTACTGCAGCTAGCTCAAAAGCGGATGGATCAACAATGGTAACTCAAACAGGCTCCGAAGGAGTATAGCTTTGTTGGGGGTGAACTTACTGCTCCTGGCTTTCCTCATAGGGGTAGACAGGCATCTTTTTTGGTTCAAAGTCGAGGTAAACGACTGATTCTTAGTCAACTCGGTTAGCTTCCTCTGCTTCCGGTGGTGGGCCAACCACTGATGCGGACAGAGGCTAGGTAATGTCTCTCCAACTAGCTCTACCCTGGTCACAGGGTCAATAATAGGTCCGGTGGTTCTTCGACTTTTTGTTTTGGCATTAAAGAGTTGCAAATCTTCTTTTACGAGAGTAAAAAAAAAGAAAGAAGAGAAAACCGGCTGGCTTTGCCTTCAACAATAACAAAAAAGGAAATAAGGGGCTTTTTAAGACACTGACGGTTGTAAGATCAGACAAGTCCTCTTTCTCAAAATTTGAGATTTCCGTCTGCTGTTAGAAAGATGATACCTCTGCTACAATCAACTGGTGATCCTCCGGGTACTATACACATGAGTGAAAGATAGAGACCTACCTTGCTCAAAAGATCTGAAAATCCTTGTGCTGAAAACTCTTTTTGCTTACCGAAATAGGAACAAAAACGTCATGACAATAACGACTATGTGTAAATGGAAAGTTGGTTGTAAACCCTCTTTCAAAGCTGTGACGAAAGAAATTCTATAAGATGGGTGTGCATTCTCGGGATTCCCGTTTTTGGTGCCAAATTGGATCCCTTATCGTCTATGATAGGTCGATCCAAAAAGGACGAAATGAGTCGCAAAATAGATGGATCCTGGAAACTAGTTCCCAGTTTGGATAAGAGACGAGATTGAGAAATTCTAGTCGTCGGCCGCCGAGCGACAAGAACAAGCAGGAGTCGTCCTATCCGCCTAGAAAGATTCTCGAAGACTTTCTAATATTATCAAAATCAAGCCCCAGCCAACTTGACTTATTTAAAACCTCCAATCGGTATGAGATACCCGGAATGGGGGTACTGGCATAGACACCTTACTCCTCGCCTTTTAGTAAACCTTCTAATCGGAGAGGCCAGACGCCAAAGCAAAAGAACTTGTGGAGTTGGAATCAAACTAAAGGGATCCCGCTTAGTGACGTGGACAAACTGACCCCTTTGGGGAGGAAGGTTAACCCAATCGTCGAACCCCGGGGGGAATTCCTTCCATACAGGATTGGGGAAAGACCAAACTTGGCAATGGATCCAAGGGGAAGCCAACTCACTTATCGATCCCAGAGTGCGGTTAATCTGCTTATTCCAGTGAACAAAGAAACTCCATGGGTGGGGCCCAACAATCAAAAGAGGGCGGACTTGGTTCGCTACAGGACAAGGAAGGGCTAA

mRNA sequence

ATGCTTCGGCCTCCCGATCCGAGAGGGACGCGACGCGAGATGATGATGGGTCAACCGCGACTGGCGCAGCTGGTGGAACTGCTGCTTTCGCTCGCGGTGGTGGTGCCTCTCCCACTGCTTATTGGTGGGTTCGAATATGGCACAGGAGTTGCTGACTTCATTCAGGTGGACACTGCAATTAGGGCTCGATCGAATATCCAAGAGATGACTTGTATACCAACTGTACTGCAGCTAGCTCAAAAGCGGATGGATCAACAATGTAAACCTTCTAATCGGAGAGGCCAGACGCCAAAGCAAAAGAACTTGTGGAGTTGGAATCAAACTAAAGGGATCCCGCTTAGTGACGTGGACAAACTGACCCCTTTGGGGAGGAAGGTTAACCCAATCGTCGAACCCCGGGGGGAATTCCTTCCATACAGGATTGGGGAAAGACCAAACTTGGCAATGGATCCAAGGGGAAGCCAACTCACTTATCGATCCCAGAGTGCGGTTAATCTGCTTATTCCAGTGAACAAAGAAACTCCATGGGTGGGGCCCAACAATCAAAAGAGGGCGGACTTGGTTCGCTACAGGACAAGGAAGGGCTAA

Coding sequence (CDS)

ATGCTTCGGCCTCCCGATCCGAGAGGGACGCGACGCGAGATGATGATGGGTCAACCGCGACTGGCGCAGCTGGTGGAACTGCTGCTTTCGCTCGCGGTGGTGGTGCCTCTCCCACTGCTTATTGGTGGGTTCGAATATGGCACAGGAGTTGCTGACTTCATTCAGGTGGACACTGCAATTAGGGCTCGATCGAATATCCAAGAGATGACTTGTATACCAACTGTACTGCAGCTAGCTCAAAAGCGGATGGATCAACAATGTAAACCTTCTAATCGGAGAGGCCAGACGCCAAAGCAAAAGAACTTGTGGAGTTGGAATCAAACTAAAGGGATCCCGCTTAGTGACGTGGACAAACTGACCCCTTTGGGGAGGAAGGTTAACCCAATCGTCGAACCCCGGGGGGAATTCCTTCCATACAGGATTGGGGAAAGACCAAACTTGGCAATGGATCCAAGGGGAAGCCAACTCACTTATCGATCCCAGAGTGCGGTTAATCTGCTTATTCCAGTGAACAAAGAAACTCCATGGGTGGGGCCCAACAATCAAAAGAGGGCGGACTTGGTTCGCTACAGGACAAGGAAGGGCTAA

Protein sequence

MLRPPDPRGTRREMMMGQPRLAQLVELLLSLAVVVPLPLLIGGFEYGTGVADFIQVDTAIRARSNIQEMTCIPTVLQLAQKRMDQQCKPSNRRGQTPKQKNLWSWNQTKGIPLSDVDKLTPLGRKVNPIVEPRGEFLPYRIGERPNLAMDPRGSQLTYRSQSAVNLLIPVNKETPWVGPNNQKRADLVRYRTRKG

Homology

[Close]

BLAST of Moc09g15370.1 vs. NCBI nr
Match: KAF5199754.1 (hypothetical protein FRX31_010659 [Thalictrum thalictroides])

HSP 1 Score: 86.3 bits (212), Expect = 3.2e-13
Identity = 47/62 (75.81%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 121 PLGRKVNPIVEPRGEFLPYRIGER---PNLAMDPRGSQLTYRSQSAVNLLIPVNKETPWV 180
           PLGRKVNPI+ P    LPYRIGER     LAMDPRGSQLTYRSQSAVNLLIPVNKE+  +
Sbjct: 15  PLGRKVNPILNP---VLPYRIGERLLAHYLAMDPRGSQLTYRSQSAVNLLIPVNKESNSM 73

[Close]

BLAST of Moc09g15370.1 vs. ExPASy TrEMBL
Match: A0A7J6WQU7 (Uncharacterized protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_010659 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 47/62 (75.81%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 121 PLGRKVNPIVEPRGEFLPYRIGER---PNLAMDPRGSQLTYRSQSAVNLLIPVNKETPWV 180
           PLGRKVNPI+ P    LPYRIGER     LAMDPRGSQLTYRSQSAVNLLIPVNKE+  +
Sbjct: 15  PLGRKVNPILNP---VLPYRIGERLLAHYLAMDPRGSQLTYRSQSAVNLLIPVNKESNSM 73

The following BLAST results are available for this feature:

BLAST of Moc09g15370.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5199754.1	3.2e-13	75.81	hypothetical protein FRX31_010659 [Thalictrum thalictroides]	[more]

BLAST of Moc09g15370.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g15370.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6WQU7	1.6e-13	75.81	Uncharacterized protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_010659 PE=...	[more]

BLAST of Moc09g15370.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..104

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc09g15370	Moc09g15370	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc09g15370.1.exon1	Moc09g15370.1.exon1	exon
Moc09g15370.1.exon2	Moc09g15370.1.exon2	exon
Moc09g15370.1.exon3	Moc09g15370.1.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc09g15370.1	cds.Moc09g15370.1	CDS
cds.Moc09g15370.1	cds.Moc09g15370.1_2	CDS
cds.Moc09g15370.1	cds.Moc09g15370.1_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc09g15370.1	Moc09g15370.1-protein	polypeptide