Moc09g15050.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g15050.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr9: 12923847 .. 12925167 (+)
Sequence length	657
RNA-Seq Expression	Moc09g15050.1
Synteny	Moc09g15050.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAACAGGAGAAGCGGACGTTGCAGGCCACTTGGGCCGAGGAGGCAGCGCCGCGGCGCTGCTACAAGGCGCCACGACGCTAGGGGACAGCGCTTCAGCACTGTCCTGGTTGGTGTGCGGGTGATGTTTTCCGTCCATAGTGCCATGGCGCAGGGGACAGCGCCGTGCCGCTGTTTCGATGTTTATAAATACGCAGCCTCGGGTTTTAGGGTTTTACCAGCAGCAAAAGGGATTATTTGCAGCCGATTTTGAGCGGGTTTTGGCACCAAATCAGTGGCAGCGGCTCGGGCATTGGTAGAAGCTTTTGGGGTTGATCAATATCAATATTATCGAAAGCCCTGTATAGCGAGACAGAGAAAAGAAATGGTACCCCCCAGACCGATATATGAGGCCCGCCCCTTACTATTCAAAAAATGACCAGACGTACCTGGTTGCGAGTAATTGTATCTTGATTCTGTGAGTTTTTCATTCCTGTTCCTAAGTATTAATTGTGTAAAATACTTAGAAGCTAGGGGCTTTTGTTGAGACCTCTAGGGGATATTGAGATGATCAGAATGGCAAGAAGAGTTCGCTTAGAATGGAATCAAAATAAATGGAACAAGAAGATTATTTTATTGAGATCGTAAAAGAGATTATTTTATTGCAATCCAATTCTTGAAACAATATTTGAGAGTACCACAACTTTGGAATGAAGGAGATCTCGACTTTGCTCAAAGAAAATTGTCCACGCGTTGGAAACCTGGAAGTATACTTGCCGCTCGAGATAACCAGGGAGCAACAAGGACATCAAGGGGCTTTCGGCAAACACCAGACCAGGGGCTGGCTGATATGCTACGCTATTGGACTATTGATCTCATTCATTCAAACGAGAGGAGTTCAGTCGAATTAATGTTGAGTCTTTCCTTACTTTAGGGCTTCTTGCCTTTTGGGAATTAACACCTCAATTCATTTTAGAGGTGGATCCAACCGCTATCTTAAATCCAAGTAAAATCAAGTGTTTCGGATCGGCAACAGGTAACAGGCTTTATCTGGGTTCAATTCCTTTCTTCCTACCCGGACCAGCATTGGATTAATTCCTTCGATGCTTGCTCGGAGCGGGGTCGACTCAATATCGAGAGACTCAGCCACCGAGGACTTTATCGCACCTTTATGTCTCCATCTCTCGAGTCGAGCTCAATCTCTGGCAGGTATTGTTTGGTCTGGAGTGCCGTCCATCTTTCTGGATGATGAAGCCCTGTTTGCCAACATTTCAGATAGTTGGTGGATCGGGAATCTAACCCAGCGAAGAAAACGCCTACGACTAAGTCAGGCGCACTAG

mRNA sequence

ATGAAAAACAGGAGAAGCGGACGTTGCAGGCCACTTGGGCCGAGGAGGCAGCGCCGCGGCGCTGCTACAAGGCGCCACGACGCTAGGGGACAGCGCTTCAGCACTGTCCTGGTTGGTGTGCGGGTGATGTTTTCCGTCCATAGTGCCATGGCGCAGGGGACAGCGCCGTGCCGCTGTTTCGATGTTTATAAATACGCAGCCTCGGGAGATCTCGACTTTGCTCAAAGAAAATTGTCCACGCGTTGGAAACCTGGAAGTATACTTGCCGCTCGAGATAACCAGGGAGCAACAAGGACATCAAGGGGCTTTCGGCAAACACCAGACCAGGGGCTGGCTGATATGCTACGCTATTGGACTATTGATCTCATTCATTCAAACGAGAGGAGTTCAGTCGAATTAATCATTGGATTAATTCCTTCGATGCTTGCTCGGAGCGGGGTCGACTCAATATCGAGAGACTCAGCCACCGAGGACTTTATCGCACCTTTATGTCTCCATCTCTCGAGTCGAGCTCAATCTCTGGCAGGTATTGTTTGGTCTGGAGTGCCGTCCATCTTTCTGGATGATGAAGCCCTGTTTGCCAACATTTCAGATAGTTGGTGGATCGGGAATCTAACCCAGCGAAGAAAACGCCTACGACTAAGTCAGGCGCACTAG

Coding sequence (CDS)

ATGAAAAACAGGAGAAGCGGACGTTGCAGGCCACTTGGGCCGAGGAGGCAGCGCCGCGGCGCTGCTACAAGGCGCCACGACGCTAGGGGACAGCGCTTCAGCACTGTCCTGGTTGGTGTGCGGGTGATGTTTTCCGTCCATAGTGCCATGGCGCAGGGGACAGCGCCGTGCCGCTGTTTCGATGTTTATAAATACGCAGCCTCGGGAGATCTCGACTTTGCTCAAAGAAAATTGTCCACGCGTTGGAAACCTGGAAGTATACTTGCCGCTCGAGATAACCAGGGAGCAACAAGGACATCAAGGGGCTTTCGGCAAACACCAGACCAGGGGCTGGCTGATATGCTACGCTATTGGACTATTGATCTCATTCATTCAAACGAGAGGAGTTCAGTCGAATTAATCATTGGATTAATTCCTTCGATGCTTGCTCGGAGCGGGGTCGACTCAATATCGAGAGACTCAGCCACCGAGGACTTTATCGCACCTTTATGTCTCCATCTCTCGAGTCGAGCTCAATCTCTGGCAGGTATTGTTTGGTCTGGAGTGCCGTCCATCTTTCTGGATGATGAAGCCCTGTTTGCCAACATTTCAGATAGTTGGTGGATCGGGAATCTAACCCAGCGAAGAAAACGCCTACGACTAAGTCAGGCGCACTAG

Protein sequence

MKNRRSGRCRPLGPRRQRRGAATRRHDARGQRFSTVLVGVRVMFSVHSAMAQGTAPCRCFDVYKYAASGDLDFAQRKLSTRWKPGSILAARDNQGATRTSRGFRQTPDQGLADMLRYWTIDLIHSNERSSVELIIGLIPSMLARSGVDSISRDSATEDFIAPLCLHLSSRAQSLAGIVWSGVPSIFLDDEALFANISDSWWIGNLTQRRKRLRLSQAH

Homology

[Close]

BLAST of Moc09g15050.1 vs. NCBI nr
Match: CAB4286136.1 (unnamed protein product [Prunus armeniaca] >CAB4316569.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 115.9 bits (289), Expect = 4.3e-22
Identity = 63/78 (80.77%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 141 MLARSGVDSISRDSATEDFIAPLCLHLSSRAQSLAGIVWSGVPSIFLDDEALFANISDSW 200
           MLARSGVDSISRDS TEDFIAPLCLHLSSRAQ LAGIVWSGV  IFL DE LF    +  
Sbjct: 1   MLARSGVDSISRDSPTEDFIAPLCLHLSSRAQPLAGIVWSGVRCIFL-DEPLF----EDE 60

Query: 201 WIGNLTQRRKRLRLSQAH 219
           WIGNLTQRRKRL +SQAH
Sbjct: 61  WIGNLTQRRKRLLISQAH 73

[Close]

BLAST of Moc09g15050.1 vs. ExPASy TrEMBL
Match: A0A6J5XS65 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS42883 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-22
Identity = 63/78 (80.77%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 141 MLARSGVDSISRDSATEDFIAPLCLHLSSRAQSLAGIVWSGVPSIFLDDEALFANISDSW 200
           MLARSGVDSISRDS TEDFIAPLCLHLSSRAQ LAGIVWSGV  IFL DE LF    +  
Sbjct: 1   MLARSGVDSISRDSPTEDFIAPLCLHLSSRAQPLAGIVWSGVRCIFL-DEPLF----EDE 60

Query: 201 WIGNLTQRRKRLRLSQAH 219
           WIGNLTQRRKRL +SQAH
Sbjct: 61  WIGNLTQRRKRLLISQAH 73

The following BLAST results are available for this feature:

BLAST of Moc09g15050.1 vs. NCBI nr


Match Name	E-value	Identity	Description
CAB4286136.1	4.3e-22	80.77	unnamed protein product [Prunus armeniaca] >CAB4316569.1 unnamed protein product...	[more]

BLAST of Moc09g15050.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g15050.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J5XS65	2.1e-22	80.77	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS42883 PE=4 S...	[more]

BLAST of Moc09g15050.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc09g15050	Moc09g15050	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc09g15050.1.exon1	Moc09g15050.1.exon1	exon
Moc09g15050.1.exon2	Moc09g15050.1.exon2	exon
Moc09g15050.1.exon3	Moc09g15050.1.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc09g15050.1	cds.Moc09g15050.1	CDS
cds.Moc09g15050.1	cds.Moc09g15050.1_2	CDS
cds.Moc09g15050.1	cds.Moc09g15050.1_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc09g15050.1	Moc09g15050.1-protein	polypeptide