Moc09g08360 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g08360
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Locationchr9: 6731210 .. 6731515 (+)
RNA-Seq ExpressionMoc09g08360
SyntenyMoc09g08360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGAGAAGGAAATTTATCGATTTATGTGGAATCAGATTGCCTTCAAGTCATAAATCTTTTGAATGGTAAAGAATCTGACCTTACAGAGATAAAATTGGTCATTGAAGATGGCGTTCAGTTGGCATCGACTGCAAATGTTGTGTCGATCCAACATGCATCGAGAGATTTGAATCTAGTGGCCCATGAGATTGCAAAGAGAGCCAGAGATGGAGAAGATTTTGCCCTTTGGAAGCGTGGGGAAGAGGAAGATATGCCTTCGTGGTTGTTCAACCTTCTTCTTTTGGAACTCCCGAATGTTTAA

mRNA sequence

ATGGAAGGAGAAGGAAATTTATCGATTTATGTGGAATCAGATTGCCTTCAAGTCATAAATCTTTTGAATGGTAAAGAATCTGACCTTACAGAGATAAAATTGGTCATTGAAGATGGCGTTCAGTTGGCATCGACTGCAAATGTTGTGTCGATCCAACATGCATCGAGAGATTTGAATCTAGTGGCCCATGAGATTGCAAAGAGAGCCAGAGATGGAGAAGATTTTGCCCTTTGGAAGCGTGGGGAAGAGGAAGATATGCCTTCGTGGTTGTTCAACCTTCTTCTTTTGGAACTCCCGAATGTTTAA

Coding sequence (CDS)

ATGGAAGGAGAAGGAAATTTATCGATTTATGTGGAATCAGATTGCCTTCAAGTCATAAATCTTTTGAATGGTAAAGAATCTGACCTTACAGAGATAAAATTGGTCATTGAAGATGGCGTTCAGTTGGCATCGACTGCAAATGTTGTGTCGATCCAACATGCATCGAGAGATTTGAATCTAGTGGCCCATGAGATTGCAAAGAGAGCCAGAGATGGAGAAGATTTTGCCCTTTGGAAGCGTGGGGAAGAGGAAGATATGCCTTCGTGGTTGTTCAACCTTCTTCTTTTGGAACTCCCGAATGTTTAA

Protein sequence

MEGEGNLSIYVESDCLQVINLLNGKESDLTEIKLVIEDGVQLASTANVVSIQHASRDLNLVAHEIAKRARDGEDFALWKRGEEEDMPSWLFNLLLLELPNV
Homology
BLAST of Moc09g08360 vs. NCBI nr
Match: RXH82922.1 (hypothetical protein DVH24_003420 [Malus domestica])

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 36/97 (37.11%), Postives = 56/97 (57.73%), Query Frame = 0

Query: 4   EGNLSIYVESDCLQVINLLNGKESDLTEIKLVIEDGVQLASTANVVSIQHASRDLNLVAH 63
           +G   + VESD  +VI +LNG  +D + + ++ ED +QLAS  + V   HASR  N VAH
Sbjct: 130 QGFQQVVVESDSQKVIAVLNGTYADSSALGMIAEDVLQLASNFSRVKFIHASRLCNGVAH 189

Query: 64  EIAKRARDGEDFALWKRGEEEDMPSWLFNLLLLELPN 101
            +AK A    +  +W     E+ P+ + +LLL ++ N
Sbjct: 190 HLAKFALSSSNNLVW----IEEPPTLIHDLLLQDICN 222

BLAST of Moc09g08360 vs. NCBI nr
Match: AFP55557.1 (non-ltr retroelement reverse transcriptase [Rosa rugosa])

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 34/87 (39.08%), Postives = 45/87 (51.72%), Query Frame = 0

Query: 8    SIYVESDCLQVINLLNGKESDLTEIKLVIEDGVQLASTANVVSIQHASRDLNLVAHEIAK 67
            +I VESDCL+ I+LLN KE  L     ++ED     +  N+ SI H  R+ N  AH IAK
Sbjct: 1562 NIMVESDCLEAIHLLNSKERCLAPEGGLVEDIQNTMALVNISSIYHVRREGNTAAHAIAK 1621

Query: 68   RARDGEDFALWKRGEEEDMPSWLFNLL 95
                     +W     ED P WL +L+
Sbjct: 1622 FVARNNGRYVWL----EDGPDWLMSLI 1644

BLAST of Moc09g08360 vs. NCBI nr
Match: RXH89245.1 (hypothetical protein DVH24_031602 [Malus domestica])

HSP 1 Score: 55.5 bits (132), Expect = 3.2e-04
Identity = 37/97 (38.14%), Postives = 52/97 (53.61%), Query Frame = 0

Query: 4   EGNLSIYVESDCLQVINLLNGKESDLTEIKLVIEDGVQLASTANVVSIQHASRDLNLVAH 63
           +G   + VESDCL+ I  LN   SDL+ I  + +D +QLAST  +V   H SR  N VAH
Sbjct: 66  QGFQQVVVESDCLKAIATLNWTHSDLSAIGTIADDVLQLASTFPMVRFIHVSRLCNGVAH 125

Query: 64  EIAKRARDGEDFALWKRGEEEDMPSWLFNLLLLELPN 101
            +AK A    +  +W     E+ P  +  LL  ++ N
Sbjct: 126 LLAKFALSSSNNLVW----FEEPPILVQELLFQDMCN 158

BLAST of Moc09g08360 vs. NCBI nr
Match: XP_023914280.1 (uncharacterized protein LOC112025826 [Quercus suber])

HSP 1 Score: 55.5 bits (132), Expect = 3.2e-04
Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 0

Query: 5   GNLSIYVESDCLQVINLLNGKESDLTEIKLVIEDGVQLASTANVVSIQHASRDLNLVAHE 64
           G  S+ +E D   VIN L  +E  L +   +IE+G  +A++ NVV   H  R+ NLVAH 
Sbjct: 236 GLSSLILEGDSEVVINALKSEEDSLVKFSHLIEEGKSIANSFNVVQFCHVKREGNLVAHN 295

Query: 65  IAKRARDGEDFAL 78
           IAK AR   +F++
Sbjct: 296 IAKHARHVSEFSV 308

BLAST of Moc09g08360 vs. NCBI nr
Match: XP_015387358.1 (uncharacterized protein LOC107177672 [Citrus sinensis])

HSP 1 Score: 55.5 bits (132), Expect = 3.2e-04
Identity = 31/88 (35.23%), Postives = 49/88 (55.68%), Query Frame = 0

Query: 7   LSIYVESDCLQVINLLNGKESDLTEIKLVIEDGVQLASTANVVSIQHASRDLNLVAHEIA 66
           L + +ESD  +V+ L+  ++S LTE+   +E+  Q    +N  S+Q+  R  N++AH IA
Sbjct: 296 LPMIIESDSTEVVELVWSRKSSLTEVSWTVEEIKQQLQISNASSLQYVPRKCNVIAHAIA 355

Query: 67  KRARDGEDFALWKRGEEEDMPSWLFNLL 95
           K A D E+  +W     ED P  +  LL
Sbjct: 356 KVALDFENSVIWL----EDFPVQIMMLL 379

BLAST of Moc09g08360 vs. ExPASy TrEMBL
Match: A0A498ILS0 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_003420 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.3e-05
Identity = 36/97 (37.11%), Postives = 56/97 (57.73%), Query Frame = 0

Query: 4   EGNLSIYVESDCLQVINLLNGKESDLTEIKLVIEDGVQLASTANVVSIQHASRDLNLVAH 63
           +G   + VESD  +VI +LNG  +D + + ++ ED +QLAS  + V   HASR  N VAH
Sbjct: 130 QGFQQVVVESDSQKVIAVLNGTYADSSALGMIAEDVLQLASNFSRVKFIHASRLCNGVAH 189

Query: 64  EIAKRARDGEDFALWKRGEEEDMPSWLFNLLLLELPN 101
            +AK A    +  +W     E+ P+ + +LLL ++ N
Sbjct: 190 HLAKFALSSSNNLVW----IEEPPTLIHDLLLQDICN 222

BLAST of Moc09g08360 vs. ExPASy TrEMBL
Match: J7G0Q7 (Non-ltr retroelement reverse transcriptase OS=Rosa rugosa OX=74645 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.9e-05
Identity = 34/87 (39.08%), Postives = 45/87 (51.72%), Query Frame = 0

Query: 8    SIYVESDCLQVINLLNGKESDLTEIKLVIEDGVQLASTANVVSIQHASRDLNLVAHEIAK 67
            +I VESDCL+ I+LLN KE  L     ++ED     +  N+ SI H  R+ N  AH IAK
Sbjct: 1562 NIMVESDCLEAIHLLNSKERCLAPEGGLVEDIQNTMALVNISSIYHVRREGNTAAHAIAK 1621

Query: 68   RARDGEDFALWKRGEEEDMPSWLFNLL 95
                     +W     ED P WL +L+
Sbjct: 1622 FVARNNGRYVWL----EDGPDWLMSLI 1644

BLAST of Moc09g08360 vs. ExPASy TrEMBL
Match: A0A7N2N656 (RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.9e-05
Identity = 30/78 (38.46%), Postives = 44/78 (56.41%), Query Frame = 0

Query: 9   IYVESDCLQVINLLNGKESDLTEIKLVIEDGVQLASTANVVSIQHASRDLNLVAHEIAKR 68
           + VE DCL+VI  LNG+ S LT    V+E+  +L S   + S  H  R+ N +AH +A+R
Sbjct: 85  VMVEGDCLRVIQALNGQGSCLTMFGHVVEETRRLGSCLELCSFHHVKREGNKLAHSLARR 144

Query: 69  ARDGEDFALWKRGEEEDM 87
           A    D  +W   + ED+
Sbjct: 145 AVLSADVDVWVEEQPEDL 162

BLAST of Moc09g08360 vs. ExPASy TrEMBL
Match: A0A498J3L0 (RNase H domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_031602 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-04
Identity = 37/97 (38.14%), Postives = 52/97 (53.61%), Query Frame = 0

Query: 4   EGNLSIYVESDCLQVINLLNGKESDLTEIKLVIEDGVQLASTANVVSIQHASRDLNLVAH 63
           +G   + VESDCL+ I  LN   SDL+ I  + +D +QLAST  +V   H SR  N VAH
Sbjct: 66  QGFQQVVVESDCLKAIATLNWTHSDLSAIGTIADDVLQLASTFPMVRFIHVSRLCNGVAH 125

Query: 64  EIAKRARDGEDFALWKRGEEEDMPSWLFNLLLLELPN 101
            +AK A    +  +W     E+ P  +  LL  ++ N
Sbjct: 126 LLAKFALSSSNNLVW----FEEPPILVQELLFQDMCN 158

BLAST of Moc09g08360 vs. ExPASy TrEMBL
Match: A0A498HAW7 (RNase H domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_030941 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.4e-04
Identity = 34/92 (36.96%), Postives = 52/92 (56.52%), Query Frame = 0

Query: 4  EGNLSIYVESDCLQVINLLNGKESDLTEIKLVIEDGVQLASTANVVSIQHASRDLNLVAH 63
          +G   I VESD ++VI++LNG  +D   + ++ ED +QLA T + V   H SR  N VAH
Sbjct: 2  QGCQQIIVESDSMKVISVLNGTVADSLALGMIAEDVLQLAFTFSRVKFIHTSRLCNWVAH 61

Query: 64 EIAKRARDGEDFALWKRGEEEDMPSWLFNLLL 96
           +AK A    +  +W +    + P+ +  LLL
Sbjct: 62 RLAKFALSSSNNLVWFK----EPPTLIQELLL 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RXH82922.11.1e-0437.11hypothetical protein DVH24_003420 [Malus domestica][more]
AFP55557.11.4e-0439.08non-ltr retroelement reverse transcriptase [Rosa rugosa][more]
RXH89245.13.2e-0438.14hypothetical protein DVH24_031602 [Malus domestica][more]
XP_023914280.13.2e-0441.10uncharacterized protein LOC112025826 [Quercus suber][more]
XP_015387358.13.2e-0435.23uncharacterized protein LOC107177672 [Citrus sinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A498ILS05.3e-0537.11Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_003420 PE=4 SV=1[more]
J7G0Q76.9e-0539.08Non-ltr retroelement reverse transcriptase OS=Rosa rugosa OX=74645 PE=4 SV=1[more]
A0A7N2N6566.9e-0538.46RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A498J3L01.5e-0438.14RNase H domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_031602 PE=... [more]
A0A498HAW73.4e-0436.96RNase H domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_030941 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 8..69
e-value: 2.0E-10
score: 40.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g08360.1Moc09g08360.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity