Moc05g16220 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g16220
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Locationchr5: 12206171 .. 12206482 (+)
RNA-Seq ExpressionMoc05g16220
SyntenyMoc05g16220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACACCCCCGCTAAGGATTGAACCCTATGATAAAGAGCTCAATGACGAAGGAATCATGAATTCCCTAGATTTTTTGGAGGAACACAGGGAATCCTCCTGCCTCCGCATTGCCAAGCATCAAAGCCGAGCAGCTAGGTATTACAATTCACGAGTGAAGCTGTGCAAGTTCGAAGTTGGAACCTTGGTGCTGAGAAAAGCAATGCTAAACACGAATAACCGAACAGATGGAGCACTCGGCCCCAATTGGGAGGGCCCCTACCGAGTGACTGGCGTCATCCGACCGGGAACTTATAGGCTGGAAATATGA

mRNA sequence

ATGGAAACACCCCCGCTAAGGATTGAACCCTATGATAAAGAGCTCAATGACGAAGGAATCATGAATTCCCTAGATTTTTTGGAGGAACACAGGGAATCCTCCTGCCTCCGCATTGCCAAGCATCAAAGCCGAGCAGCTAGGTATTACAATTCACGAGTGAAGCTGTGCAAGTTCGAAGTTGGAACCTTGGTGCTGAGAAAAGCAATGCTAAACACGAATAACCGAACAGATGGAGCACTCGGCCCCAATTGGGAGGGCCCCTACCGAGTGACTGGCGTCATCCGACCGGGAACTTATAGGCTGGAAATATGA

Coding sequence (CDS)

ATGGAAACACCCCCGCTAAGGATTGAACCCTATGATAAAGAGCTCAATGACGAAGGAATCATGAATTCCCTAGATTTTTTGGAGGAACACAGGGAATCCTCCTGCCTCCGCATTGCCAAGCATCAAAGCCGAGCAGCTAGGTATTACAATTCACGAGTGAAGCTGTGCAAGTTCGAAGTTGGAACCTTGGTGCTGAGAAAAGCAATGCTAAACACGAATAACCGAACAGATGGAGCACTCGGCCCCAATTGGGAGGGCCCCTACCGAGTGACTGGCGTCATCCGACCGGGAACTTATAGGCTGGAAATATGA

Protein sequence

METPPLRIEPYDKELNDEGIMNSLDFLEEHRESSCLRIAKHQSRAARYYNSRVKLCKFEVGTLVLRKAMLNTNNRTDGALGPNWEGPYRVTGVIRPGTYRLEI
Homology
[Close]
BLAST of Moc05g16220 vs. NCBI nr
Match: XP_022158579.1 (uncharacterized protein LOC111025033 [Momordica charantia])

HSP 1 Score: 109.4 bits (272), Expect = 1.9e-20
Identity = 54/99 (54.55%), Postives = 70/99 (70.71%), Query Frame = 0 

Query: 4   PPLRIEPYDKELNDEGIMNSLDFLEEHRESSCLRIAKHQSRAARYYNSRVKLCKFEVGTL 63
           P  R+E +    N+E +  +LD LEEHRE++ LR A++++R ARYYNS+VK   F+ G L
Sbjct: 768 PSPRVEQFTLLDNNESVKLNLDLLEEHRETARLRTAEYKNRIARYYNSKVKKRDFKEGDL 827

Query: 64  VLRKAMLNTNNRTDGALGPNWEGPYRVTGVIRPGTYRLE 103
           VLRK M NT + T GALGP WEGPY+ T V+R GTY LE
Sbjct: 828 VLRKVMPNTKDSTSGALGPTWEGPYKXTKVVRIGTYALE 866

[Close]
BLAST of Moc05g16220 vs. NCBI nr
Match: XP_022156561.1 (uncharacterized protein LOC111023436 [Momordica charantia])

HSP 1 Score: 107.8 bits (268), Expect = 5.5e-20
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 0 

Query: 4   PPLRIEPYDKELNDEGIMNSLDFLEEHRESSCLRIAKHQSRAARYYNSRVKLCKFEVGTL 63
           P  R+E      N+E +  SLD LEEHRE++ LR A++++R ARYYNS+VK   F+ G L
Sbjct: 107 PSPRVEQIRLPNNNESVQLSLDLLEEHRETARLRTAEYKNRIARYYNSKVKKRDFKEGDL 166

Query: 64  VLRKAMLNTNNRTDGALGPNWEGPYRVTGVIRPGTYRLE 103
           VLRK M NT + T GA  P WEGPY+VT V+R GTY LE
Sbjct: 167 VLRKIMPNTKDSTSGAFRPTWEGPYKVTKVVRTGTYALE 205

[Close]
BLAST of Moc05g16220 vs. NCBI nr
Match: KFK32352.1 (hypothetical protein AALP_AA6G230500 [Arabis alpina])

HSP 1 Score: 107.1 bits (266), Expect = 9.4e-20
Identity = 50/95 (52.63%), Postives = 66/95 (69.47%), Query Frame = 0 

Query: 7   RIEPYDKELNDEGIMNSLDFLEEHRESSCLRIAKHQSRAARYYNSRVKLCKFEVGTLVLR 66
           R+ P ++ELND  + + LDFL E R+ + +RIA +Q+ AARYYNS+V+  +F  G LVLR
Sbjct: 766 RLLPENEELNDSLLFDELDFLNERRDQALIRIANYQNAAARYYNSKVRERRFREGDLVLR 825

Query: 67  KAMLNTNNRTDGALGPNWEGPYRVTGVIRPGTYRL 102
           +   NT  R  G LG NWEGPY+VT V+RPG Y L
Sbjct: 826 EVFQNTAERNAGKLGANWEGPYKVTAVVRPGVYEL 860

[Close]
BLAST of Moc05g16220 vs. NCBI nr
Match: KFK32351.1 (hypothetical protein AALP_AA6G230500 [Arabis alpina])

HSP 1 Score: 107.1 bits (266), Expect = 9.4e-20
Identity = 50/95 (52.63%), Postives = 66/95 (69.47%), Query Frame = 0 

Query: 7    RIEPYDKELNDEGIMNSLDFLEEHRESSCLRIAKHQSRAARYYNSRVKLCKFEVGTLVLR 66
            R+ P ++ELND  + + LDFL E R+ + +RIA +Q+ AARYYNS+V+  +F  G LVLR
Sbjct: 1354 RLLPENEELNDSLLFDELDFLNERRDQALIRIANYQNAAARYYNSKVRERRFREGDLVLR 1413

Query: 67   KAMLNTNNRTDGALGPNWEGPYRVTGVIRPGTYRL 102
            +   NT  R  G LG NWEGPY+VT V+RPG Y L
Sbjct: 1414 EVFQNTAERNAGKLGANWEGPYKVTAVVRPGVYEL 1448

[Close]
BLAST of Moc05g16220 vs. NCBI nr
Match: KFK44297.1 (hypothetical protein AALP_AA1G239700 [Arabis alpina])

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 50/98 (51.02%), Postives = 66/98 (67.35%), Query Frame = 0 

Query: 4    PPLRIEPYDKELNDEGIMNSLDFLEEHRESSCLRIAKHQSRAARYYNSRVKLCKFEVGTL 63
            P  R+ P  ++LND  + + LDFL E R  + +RIA +Q+ AARYYNS+V++ +F  G L
Sbjct: 1255 PRRRLLPEHEDLNDSLLFDELDFLNERRSQALIRIANYQNAAARYYNSKVRVRRFREGDL 1314

Query: 64   VLRKAMLNTNNRTDGALGPNWEGPYRVTGVIRPGTYRL 102
            VLR+   NT  R  G LG NWEGPY+VT V+RPG Y L
Sbjct: 1315 VLREVFQNTAERNAGKLGANWEGPYKVTTVVRPGVYEL 1352

[Close]
BLAST of Moc05g16220 vs. ExPASy TrEMBL
Match: A0A6J1DZU0 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025033 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 9.2e-21
Identity = 54/99 (54.55%), Postives = 70/99 (70.71%), Query Frame = 0 

Query: 4   PPLRIEPYDKELNDEGIMNSLDFLEEHRESSCLRIAKHQSRAARYYNSRVKLCKFEVGTL 63
           P  R+E +    N+E +  +LD LEEHRE++ LR A++++R ARYYNS+VK   F+ G L
Sbjct: 768 PSPRVEQFTLLDNNESVKLNLDLLEEHRETARLRTAEYKNRIARYYNSKVKKRDFKEGDL 827

Query: 64  VLRKAMLNTNNRTDGALGPNWEGPYRVTGVIRPGTYRLE 103
           VLRK M NT + T GALGP WEGPY+ T V+R GTY LE
Sbjct: 828 VLRKVMPNTKDSTSGALGPTWEGPYKXTKVVRIGTYALE 866

[Close]
BLAST of Moc05g16220 vs. ExPASy TrEMBL
Match: A0A6J1DVB6 (uncharacterized protein LOC111023436 OS=Momordica charantia OX=3673 GN=LOC111023436 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.7e-20
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 0 

Query: 4   PPLRIEPYDKELNDEGIMNSLDFLEEHRESSCLRIAKHQSRAARYYNSRVKLCKFEVGTL 63
           P  R+E      N+E +  SLD LEEHRE++ LR A++++R ARYYNS+VK   F+ G L
Sbjct: 107 PSPRVEQIRLPNNNESVQLSLDLLEEHRETARLRTAEYKNRIARYYNSKVKKRDFKEGDL 166

Query: 64  VLRKAMLNTNNRTDGALGPNWEGPYRVTGVIRPGTYRLE 103
           VLRK M NT + T GA  P WEGPY+VT V+R GTY LE
Sbjct: 167 VLRKIMPNTKDSTSGAFRPTWEGPYKVTKVVRTGTYALE 205

[Close]
BLAST of Moc05g16220 vs. ExPASy TrEMBL
Match: A0A087GR49 (Ribonuclease H OS=Arabis alpina OX=50452 GN=AALP_AA6G230500 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.5e-20
Identity = 50/95 (52.63%), Postives = 66/95 (69.47%), Query Frame = 0 

Query: 7    RIEPYDKELNDEGIMNSLDFLEEHRESSCLRIAKHQSRAARYYNSRVKLCKFEVGTLVLR 66
            R+ P ++ELND  + + LDFL E R+ + +RIA +Q+ AARYYNS+V+  +F  G LVLR
Sbjct: 1354 RLLPENEELNDSLLFDELDFLNERRDQALIRIANYQNAAARYYNSKVRERRFREGDLVLR 1413

Query: 67   KAMLNTNNRTDGALGPNWEGPYRVTGVIRPGTYRL 102
            +   NT  R  G LG NWEGPY+VT V+RPG Y L
Sbjct: 1414 EVFQNTAERNAGKLGANWEGPYKVTAVVRPGVYEL 1448

[Close]
BLAST of Moc05g16220 vs. ExPASy TrEMBL
Match: A0A087GR50 (Ribonuclease H OS=Arabis alpina OX=50452 GN=AALP_AA6G230500 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.5e-20
Identity = 50/95 (52.63%), Postives = 66/95 (69.47%), Query Frame = 0 

Query: 7   RIEPYDKELNDEGIMNSLDFLEEHRESSCLRIAKHQSRAARYYNSRVKLCKFEVGTLVLR 66
           R+ P ++ELND  + + LDFL E R+ + +RIA +Q+ AARYYNS+V+  +F  G LVLR
Sbjct: 766 RLLPENEELNDSLLFDELDFLNERRDQALIRIANYQNAAARYYNSKVRERRFREGDLVLR 825

Query: 67  KAMLNTNNRTDGALGPNWEGPYRVTGVIRPGTYRL 102
           +   NT  R  G LG NWEGPY+VT V+RPG Y L
Sbjct: 826 EVFQNTAERNAGKLGANWEGPYKVTAVVRPGVYEL 860

[Close]
BLAST of Moc05g16220 vs. ExPASy TrEMBL
Match: A0A087HQ94 (Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA1G239700 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.8e-20
Identity = 50/98 (51.02%), Postives = 66/98 (67.35%), Query Frame = 0 

Query: 4    PPLRIEPYDKELNDEGIMNSLDFLEEHRESSCLRIAKHQSRAARYYNSRVKLCKFEVGTL 63
            P  R+ P  ++LND  + + LDFL E R  + +RIA +Q+ AARYYNS+V++ +F  G L
Sbjct: 1078 PRRRLLPEHEDLNDSLLFDELDFLNERRSQALIRIANYQNAAARYYNSKVRVRRFREGDL 1137

Query: 64   VLRKAMLNTNNRTDGALGPNWEGPYRVTGVIRPGTYRL 102
            VLR+   NT  R  G LG NWEGPY+VT V+RPG Y L
Sbjct: 1138 VLREVFQNTAERNAGKLGANWEGPYKVTTVVRPGVYEL 1175

The following BLAST results are available for this feature:
BLAST of Moc05g16220 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158579.11.9e-2054.55uncharacterized protein LOC111025033 [Momordica charantia][more]
XP_022156561.15.5e-2054.55uncharacterized protein LOC111023436 [Momordica charantia][more]
KFK32352.19.4e-2052.63hypothetical protein AALP_AA6G230500 [Arabis alpina][more]
KFK32351.19.4e-2052.63hypothetical protein AALP_AA6G230500 [Arabis alpina][more]
KFK44297.11.6e-1951.02hypothetical protein AALP_AA1G239700 [Arabis alpina][more]
BLAST of Moc05g16220 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc05g16220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DZU09.2e-2154.55Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025033 PE=4 SV=1[more]
A0A6J1DVB62.7e-2054.55uncharacterized protein LOC111023436 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A087GR494.5e-2052.63Ribonuclease H OS=Arabis alpina OX=50452 GN=AALP_AA6G230500 PE=4 SV=1[more]
A0A087GR504.5e-2052.63Ribonuclease H OS=Arabis alpina OX=50452 GN=AALP_AA6G230500 PE=4 SV=1[more]
A0A087HQ947.8e-2051.02Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA1G239700 PE=4 SV=1[more]
BLAST of Moc05g16220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g16220.1Moc05g16220.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process