Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTAAATACAACCCCTCTCGAGTTGTCTTCTAAAGAAAAACACAAGAAGATTGAAAAGCAACAAGGAAATGAAAGACGTCGCTTGAATTTGAAGGAAAGACAGAAAAAGATCTATCCTTTTCCAAATTCTGACGTCCCTAACATGTTAGAACAACTACTGAAAACGCGGTTGATAGAACTTCCCGAGTGCAAACGACCAGAAGAGATTGAAAAGGTTCCCAACTACTGCATGTATCATCGAGTTATCAGCCACCCAGTAGAAAAATGTTTTGTCCTGAAAGAGTTAATTCTAAGGTTAGCTAAAGAAGGAAAAATCGAGTTGGACCTTGAAGAAGTAGCTCAATCAAATCATGCTACAATAGCAACAAACACTTGCAGTCAAATGTGTTTTGGTCTGCTTCATGATCAAGAGGTGCACCTACTCCAATTTGGAACCATTGAACCTATAACTATTTGGTTTCATCATGAGGTATCGGGAGACAAATCTCAAGATCCTGTCAATCTTATCAGTAATGAAGATAAAGGAAGTACTATCATGACTCGTAAGAAGAAATAAGGACGACATCTCGTTCAAAAAGGATGTTGTTCATCCAAAAGAGTGAATAAACATCGAAGACAGAAGAATCCAAGGAAACCTAAACTTGAGGAAAAAAGAGATCAAAATCCTGCTCGACATTGTCGACTAGTAACCTTAAAAGAATCATTTCTGAGAAATTTTCATCCCGTCAAGAAAGTGGAAGAAAACTTTGTAAGTTCATGTTATATCAACATAGAAGAAGATGGTATATCAAAGGAAATCAAGCAAAGGACTTCCGTCTTTGATCGCATTGAACCTTCAACTACTCAAACTTCGGTCTTCCAAAGAATGAGTATGGTTGTAGCAAGAGAAGAAGATCAAAGCTTGACATCTGCCATCACTCGACATTCAGTTTTCCAAAGACTAAGCGTCTCTGCATCAAGAAAGTGTCGACCTTCAACAACTGCTTTTGATCGTCTCAAAGTAAGAAGCGACCAACGTGAAAGAAAGGTGGACAGTTCAGAAGTTAAATTATTTGATGAAGTAAACAATGACAAGAAGCTTCATAGTACCATTTCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAACACAGAAGGTTCCTTGAAGGTGAAACCAAATCTTATCATTTTGACAAATCCTACAAATGAAGGATCTGATCAATACTATGGTAGATAAAAAGAAATTTAAAATTTAAATGCTCCTTATTGCATGAGCATAAACTGCATGATGCTCCTGGCCCACACGAGCTTAAAAGGTAAATGCAAAAAAAAAAAAAAATCGAACTACGTTATGACTTGATCCCTTTTCTTTCAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCCTTGCAAAAAAAAAGTGCTACAAATATAGAAGCATATGACAATACAAGTTAAAGATGCTTACCCTTACTGGGGGCAACACAGTAAATTGAAGACGTACATTGCTATGAATGGAACGCTACGAATTAAATGCATAAAAGAAGGCTTCGTTCTTTCAAGTTCGACGATTCGCTCGCTCCAAGTCCGGTGTCTCGCCTAGTTTGGTGTCTCGCTCCTTCTATGTTTGCATTCCACACACTTCAAGTTTGGTGTTTCGCTCCTTCAAAGTTTGGAGTCTCACCCCCTTTAAGTTTGGCGTCTTGTTTCCTCTAAGTTTGCATTCTCCATGCTTCAAGTTTGGTGTTTCGCTCGCTCAAATTTCGACGTCTCACCCTCTCCACGTTCGGCGATTACTCCATTCAAGTTTGGCTTATCACTTGTCCCAAGTTCGATAGCTCGCTTCACCTTCAAAGGGTGGCATTTGAAGGCTTCGTTTTCACTTCATCTTCAAATCTTCAAAGGTTGACCGTTGAAAACTTTGCTTCACTACAAATGTTGTCGGTTGAAGACTTCACTATCACTTCATCTTCAAAATTTGGCGGTCTACATCGCTTCATTTTCAAAGGTTGACCATTGACAACTTTGCTTAATCTCCAAAAGATAGTGGTGGAAGGATTCGTTGTCGCTTCATCTTCAAAAGTTGGCAGTTACGACTTCGCTTCGTTTTCAAAAGTTGGCAGTTGAAAGTCTTGCTCCATCTTCAAAGATTGACAGTCAACAGCTTTGTTTCATCTTCAAAGGTTGACAGTTGAATGCTTTCTTTCGCTTCATCTTCAGAAGTTGACGATTGGTGGCCCCGCATCTTCTTCAAAAGTTGACAGTTGGCGACCTCGCTCCTTCTTCAAAGTTGACGATTGATAACTTCATTTCAAAGTTGGCGGCTGGCGACTTTCACTTCATCTTCAAAAGTTGACGGTTGGCAGTCTCGCTTCTTCTTCAAAGTTGACGATTGACAACTTCACTTCAAAGTTGGCGGTTGGCGACTTTCACTTCGTCTTCAAAAGTTGACGGTTGGCGGTCTCGCTTCTTCTTCAAAGTTAACGGTTGACAACTTCACTTCAAATTGGCGGTTGGCGACTTTCGCTTCATCTTCAAAAGTTGACAGTTGGAAGTCTCGCTTCTTCTTCAAAAATTGAAGGTTGACAACTTCACTTCATATTCAAAAGTTGACGGTTGAAGTTTTCGCTTTAGAACATCTGCAAAGATGAACAACTTTAGCGTTGCCTTTATCTTGAAAGTGTCTAGACTGGAAGATGCATCTTAGCTACAAGTTAAAAAAAATGCTTGATATCAAACCAAAAAAAAAAAAAAAAAGAGAGAAAGAAAGACAATAAAGGTGTTGTTAAAAAATGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAGTCACTACAATTGAATCTGATGACGATCGTTGTAGGCGAGTCTGGTAATCACCCGTGCAGGAACTACAGTCATCAAAGTGACTAGTCTAGACAGGTGGTGAAGTCACTGCAAGTGAATCTGATGACGACCGTTGTAGACGAATCTGGTGACCACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGAGACTGGTCTAGCAGGAGTGCATCACTGTGGACGAATCTGA
mRNA sequence
ATGGTGGTAAATACAACCCCTCTCGAGTTGTCTTCTAAAGAAAAACACAAGAAGATTGAAAAGCAACAAGGAAATGAAAGACGTCGCTTGAATTTGAAGGAAAGACAGAAAAAGATCTATCCTTTTCCAAATTCTGACGTCCCTAACATGTTAGAACAACTACTGAAAACGCGGTTGATAGAACTTCCCGAGTGCAAACGACCAGAAGAGATTGAAAAGGTTCCCAACTACTGCATGTATCATCGAGTTATCAGCCACCCAGTAGAAAAATGTTTTGTCCTGAAAGAGTTAATTCTAAGGTTAGCTAAAGAAGGAAAAATCGAGTTGGACCTTGAAGAAGTAGCTCAATCAAATCATGCTACAATAGCAACAAACACTTGCAGTCAAATGTGTTTTGGTCTGCTTCATGATCAAGAGGTGCACCTACTCCAATTTGGAACCATTGAACCTATAACTATTTGGTTTCATCATGAGGTATCGGGAGACAAATCTCAAGATCCTGTCAATCTTATCAGTAATGAAGATAAAGGAAGTACTATCATGACTCAAGAAGATGGTATATCAAAGGAAATCAAGCAAAGGACTTCCGTCTTTGATCGCATTGAACCTTCAACTACTCAAACTTCGGTCTTCCAAAGAATGAGTATGGTTGTAGCAAGAGAAGAAGATCAAAGCTTGACATCTGCCATCACTCGACATTCAGTTTTCCAAAGACTAAGCGTCTCTGCATCAAGAAAGTGTCGACCTTCAACAACTGCTTTTGATCGTCTCAAAGTAAGAAGCGACCAACGTGAAAGAAAGGTGGACAGTTCAGAAGTTAAATTATTTGATGAAGTAAACAATGACAAGAAGCTTCATAGTACCATTTCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAACACAGAAGGTTCCTTGAAGGTGAAACCAAATCTTATCATTTTGACAAATCCTACAAATGAAGGATCTGATCAATACTATGTTTGCATTCTCCATGCTTCAAGTTTGGTGTTTCGCTCGCTCAAATTTCGACGTCTCACCCTCTCCACGTTCGGCGATTACTCCATTCAAGTTTGGCTTATCACTTGTCCCAAGTTCGATAGCTCGCTTCACCTTCAAAGGGTGGCATTTGAAGGCTTCGTTTTCACTTCATCTTCAAATCTTCAAAGGTTGACCGTTGAAAACTTTGCTTCACTACAAATGTTGTCGGTTGAAGACTTCACTATCACTTCATCTTCAAAATTTGGCGGTCTACATCGCTTCATTTTCAAAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAGTCACTACAATTGAATCTGATGACGATCGTTGTAGGCGAGTCTGACGAATCTGGTGACCACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGAGACTGGTCTAGCAGGAGTGCATCACTGTGGACGAATCTGA
Coding sequence (CDS)
ATGGTGGTAAATACAACCCCTCTCGAGTTGTCTTCTAAAGAAAAACACAAGAAGATTGAAAAGCAACAAGGAAATGAAAGACGTCGCTTGAATTTGAAGGAAAGACAGAAAAAGATCTATCCTTTTCCAAATTCTGACGTCCCTAACATGTTAGAACAACTACTGAAAACGCGGTTGATAGAACTTCCCGAGTGCAAACGACCAGAAGAGATTGAAAAGGTTCCCAACTACTGCATGTATCATCGAGTTATCAGCCACCCAGTAGAAAAATGTTTTGTCCTGAAAGAGTTAATTCTAAGGTTAGCTAAAGAAGGAAAAATCGAGTTGGACCTTGAAGAAGTAGCTCAATCAAATCATGCTACAATAGCAACAAACACTTGCAGTCAAATGTGTTTTGGTCTGCTTCATGATCAAGAGGTGCACCTACTCCAATTTGGAACCATTGAACCTATAACTATTTGGTTTCATCATGAGGTATCGGGAGACAAATCTCAAGATCCTGTCAATCTTATCAGTAATGAAGATAAAGGAAGTACTATCATGACTCAAGAAGATGGTATATCAAAGGAAATCAAGCAAAGGACTTCCGTCTTTGATCGCATTGAACCTTCAACTACTCAAACTTCGGTCTTCCAAAGAATGAGTATGGTTGTAGCAAGAGAAGAAGATCAAAGCTTGACATCTGCCATCACTCGACATTCAGTTTTCCAAAGACTAAGCGTCTCTGCATCAAGAAAGTGTCGACCTTCAACAACTGCTTTTGATCGTCTCAAAGTAAGAAGCGACCAACGTGAAAGAAAGGTGGACAGTTCAGAAGTTAAATTATTTGATGAAGTAAACAATGACAAGAAGCTTCATAGTACCATTTCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAACACAGAAGGTTCCTTGAAGGTGAAACCAAATCTTATCATTTTGACAAATCCTACAAATGAAGGATCTGATCAATACTATGTTTGCATTCTCCATGCTTCAAGTTTGGTGTTTCGCTCGCTCAAATTTCGACGTCTCACCCTCTCCACGTTCGGCGATTACTCCATTCAAGTTTGGCTTATCACTTGTCCCAAGTTCGATAGCTCGCTTCACCTTCAAAGGGTGGCATTTGAAGGCTTCGTTTTCACTTCATCTTCAAATCTTCAAAGGTTGACCGTTGAAAACTTTGCTTCACTACAAATGTTGTCGGTTGAAGACTTCACTATCACTTCATCTTCAAAATTTGGCGGTCTACATCGCTTCATTTTCAAAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAGTCACTACAATTGAATCTGATGACGATCGTTGTAGGCGAGTCTGACGAATCTGGTGACCACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGAGACTGGTCTAGCAGGAGTGCATCACTGTGGACGAATCTGA
Protein sequence
MVVNTTPLELSSKEKHKKIEKQQGNERRRLNLKERQKKIYPFPNSDVPNMLEQLLKTRLIELPECKRPEEIEKVPNYCMYHRVISHPVEKCFVLKELILRLAKEGKIELDLEEVAQSNHATIATNTCSQMCFGLLHDQEVHLLQFGTIEPITIWFHHEVSGDKSQDPVNLISNEDKGSTIMTQEDGISKEIKQRTSVFDRIEPSTTQTSVFQRMSMVVAREEDQSLTSAITRHSVFQRLSVSASRKCRPSTTAFDRLKVRSDQRERKVDSSEVKLFDEVNNDKKLHSTISSRMKRKFSVLINTEGSLKVKPNLIILTNPTNEGSDQYYVCILHASSLVFRSLKFRRLTLSTFGDYSIQVWLITCPKFDSSLHLQRVAFEGFVFTSSSNLQRLTVENFASLQMLSVEDFTITSSSKFGGLHRFIFKGNYSHQSDWSRQVVKSLQLNLMTIVVGESDESGDHPCRLLRSPNKMETGLAGVHHCGRI
Homology
BLAST of Lag0008902 vs. NCBI nr
Match:
KAA0032121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 301.2 bits (770), Expect = 1.6e-77
Identity = 182/363 (50.14%), Postives = 238/363 (65.56%), Query Frame = 0
Query: 1 MVVNTTPLELSSKEKHKKIEK-QQGNERRRLNLKERQKKIYPFPNSDVPNMLEQLLKTRL 60
M+V TPL+ SK K K ++ G+E+RR L+ERQKK+YPFP+SDV +MLEQL++ +L
Sbjct: 372 MLVQETPLKSFSKRKETKHKRNHDGDEKRRPTLRERQKKVYPFPDSDVADMLEQLIEKQL 431
Query: 61 IELPECKRPEEIEKV--PNYCMYHRVISHPVEKCFVLKELILRLAKEGKIELDLEEVAQS 120
I+LPECKRPE++ KV PNYC YHRVISH VEKCFVLKELI +LA+E KIELD++EVAQ+
Sbjct: 432 IQLPECKRPEQVGKVDDPNYCKYHRVISHLVEKCFVLKELIRKLARENKIELDIDEVAQT 491
Query: 121 NHATIATNTCSQMCFG-LLHDQEVHLLQFGTIEPITIWFH-----------HEVSGDKSQ 180
NH +A N S + LL+DQ L+QFGT EPI + F E S D+ +
Sbjct: 492 NH--VAVNMTSSVPLSILLYDQRKSLIQFGTFEPILVRFQQKTMTSNSQNKEEPSEDEGE 551
Query: 181 DPVNLISN---EDKGSTIMT-------------------QEDGISKEIKQRTSVFDRIEP 240
+ + + ED I+ +E S EIKQRTSVFD I+P
Sbjct: 552 EWIEFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEIKQRTSVFDCIKP 611
Query: 241 STTQTSVFQRMSMVVAREEDQSLTSAITRHSVFQRLSVSASRKCRPSTTAFDRLKVRSDQ 300
TT++SVFQR+SM +EE+Q T + S F+RLS+S S+K RPST FDRLK+ +DQ
Sbjct: 612 LTTRSSVFQRLSMATKKEENQCPTFTYAQTSAFKRLSISISKKHRPSTYTFDRLKMTNDQ 671
Query: 301 RERKVDSSEVKLFDEVNNDKKLHSTISSRMKRKFSVLINTEGSLKVKPNLIILTNPTNEG 327
++R++ + + K F E N+D K+HS + SRMKRK SV INTEGSL VKP II TNP NEG
Sbjct: 672 QQREMKTLKAKPFQEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNPINEG 731
BLAST of Lag0008902 vs. NCBI nr
Match:
KAA0056121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 297.4 bits (760), Expect = 2.3e-76
Identity = 176/338 (52.07%), Postives = 228/338 (67.46%), Query Frame = 0
Query: 1 MVVNTTPLELSSKEKHKKIE-KQQGNERRRLNLKERQKKIYPFPNSDVPNMLEQLLKTRL 60
MVV+ TPL+ SK K KIE K G+E+R+ LKERQ+K+YPFP+SDV +MLEQLL+ +L
Sbjct: 398 MVVHATPLKSFSKRKETKIERKHDGDEKRQSTLKERQEKVYPFPDSDVADMLEQLLENQL 457
Query: 61 IELPECKRPEEIEKV--PNYCMYHRVISHPVEKCFVLKELILRLAKEGKIELDLEEVAQS 120
I+LPECKRPE+ KV PNYC YHRVISHPVEKCFVLKELIL+LA+E KIELD++EVAQ+
Sbjct: 458 IQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDEVAQT 517
Query: 121 NHATIATNTCSQMCFGLLHDQEVHLLQFGTIEPITIWFHHEVSGDKSQDPVNLISNEDKG 180
NHA +M + ++ LQ + + D ++ + + +
Sbjct: 518 NHAI-------EMTSNPIKGKDEDFLQLRRSITLAEFLPRSFLEDDPEEILEVTACHAAS 577
Query: 181 STIMTQEDGISK------EIKQRTSVFDRIEPSTTQTSVFQRMSMVVAREEDQSLTSAIT 240
+ G SK EI QRTSVFDRI+PSTT++SVFQR+S+ EE+Q T T
Sbjct: 578 IVEVDNNYGSSKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTFIYT 637
Query: 241 RHSVFQRLSVSASRKCRPSTTAFDRLKVRSDQRERKVDSSEVKLFDEVNNDKKLHSTISS 300
R S +RLS+S +K RPST++FDRLK+ +DQ++R++ SS+ K F E N+D K+HS + S
Sbjct: 638 RTSTSKRLSISTLKKDRPSTSSFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPS 697
Query: 301 RMKRKFSVLINTEGSLKVKPNLIILTNPTNEGSDQYYV 330
RMKRK V INTEGSL VKP II TNPTNEG +Q V
Sbjct: 698 RMKRKLFVDINTEGSLTVKPRFIIFTNPTNEGDEQILV 728
BLAST of Lag0008902 vs. NCBI nr
Match:
KAA0025376.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 297.0 bits (759), Expect = 3.0e-76
Identity = 195/428 (45.56%), Postives = 245/428 (57.24%), Query Frame = 0
Query: 1 MVVNTTPLELSSKEKHKKIE-KQQGNERRRLNLKERQKKIYPFPNSDVPNMLEQLLKTRL 60
M+V+ TPL+ SK K KIE K GNE+R+ LKERQ+K+YPFP+SDV +MLEQLL+ +L
Sbjct: 51 MIVHETPLKSFSKRKETKIERKHDGNEKRQSTLKERQEKVYPFPDSDVADMLEQLLENQL 110
Query: 61 IELPECKRPEEIEKV--PNYCMYHRVISHPVEKCFVLKELILRLAKEGKIELDLEEVAQS 120
I+LPECKRPE+ EKV PNYC YHRVISHPVEKCFVLKELIL+LA+E KIELD++EVAQ+
Sbjct: 111 IQLPECKRPEQAEKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDEVAQT 170
Query: 121 NHATIATNTCSQMCFGLLHDQEVHLLQFGTIEPITIWFHHE------------------- 180
NH I T + L DQ L+QFGT PI + F
Sbjct: 171 NHVAIEM-TSNVPPLTQLDDQRKSLIQFGTFAPILVLFQQRIVTINSQNKEAHGKDDGEG 230
Query: 181 ---VSGDKSQDPVNL--------------ISNEDKGS----------------------- 240
V+ K + P ++ IS + KGS
Sbjct: 231 WITVTRQKGRQPNSIKKESRFHQKYAKGSISYKKKGSRNKKMWNPKPIKGKDEDFLQLRR 290
Query: 241 --TI-----------------------------------MTQEDGISKEIKQRTSVFDRI 300
T+ ++E S EI QRTSVFDRI
Sbjct: 291 SITLAEFLPRSFLEGHPEEILEVTACHAASIVEVDNNYGSSKEVNNSNEINQRTSVFDRI 350
Query: 301 EPSTTQTSVFQRMSMVVAREEDQSLTSAITRHSVFQRLSVSASRKCRPSTTAFDRLKVRS 330
+PSTT++SVFQR+SM EE+Q T TR S F+RLS+S S+K RPST+AFDRLK+ +
Sbjct: 351 KPSTTRSSVFQRLSMATKEEENQCPTFIYTRTSTFKRLSISTSKKDRPSTSAFDRLKMTN 410
BLAST of Lag0008902 vs. NCBI nr
Match:
KAA0040811.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 288.1 bits (736), Expect = 1.4e-73
Identity = 187/425 (44.00%), Postives = 241/425 (56.71%), Query Frame = 0
Query: 1 MVVNTTPLELSSKEKHKKIEK-QQGNERRRLNLKERQKKIYPFPNSDVPNMLEQLLKTRL 60
M+V TPL+ SK K +K E+ G+E+RR L+ERQKK+YPFP+SDV +MLEQL++ +L
Sbjct: 183 MLVQETPLKSFSKRKERKHERNHNGDEKRRPTLRERQKKVYPFPDSDVADMLEQLIEKQL 242
Query: 61 IELPECKRPEEIEKV--PNYCMYHRVISHPVEKCFVLKELILRLAKEGKIELDLEEVAQS 120
I+LP+CKRPE+ KV PNYC YHRVISH VEKCFVLKELIL+L +E KIELD++EVAQ+
Sbjct: 243 IQLPKCKRPEQAGKVDDPNYCKYHRVISHHVEKCFVLKELILKLTRENKIELDIDEVAQT 302
Query: 121 NHATIATNTCSQMCFGLLHDQEVHLLQFGTIEPITIWFHHEVSGDKSQDPVNLISNED-- 180
NH + T S LL+DQ L+QFGT EPI + F +V SQ+ I +E
Sbjct: 303 NHVAV-NMTSSVPPSILLYDQRESLIQFGTFEPILVRFQQKVMTSNSQNKEEPIEDEGEE 362
Query: 181 ----------KGSTIMT------------------------------------------- 240
+ S++ T
Sbjct: 363 WIVVAHKKERQTSSVQTNSHFHQKHSKGNISHKKKGRRNKKMWKSKPIKGKDEDFLQPRQ 422
Query: 241 -----------------------------------------QEDGISKEIKQRTSVFDRI 300
+E S EIKQRTSVFDRI
Sbjct: 423 SITLAEFFPRSFLEDHPKEILEVTACHTTSIVEFDNNYDSYEEVDNSNEIKQRTSVFDRI 482
Query: 301 EPSTTQTSVFQRMSMVVAREEDQSLTSAITRHSVFQRLSVSASRKCRPSTTAFDRLKVRS 327
+P TT++SVFQR+S+ EE+Q TS TR S F+ LS+S S+K RPST+AFDRLK+ +
Sbjct: 483 KPLTTRSSVFQRLSITTKEEENQCPTSTCTRTSAFKSLSISTSKKDRPSTSAFDRLKMIN 542
BLAST of Lag0008902 vs. NCBI nr
Match:
KAA0033746.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 284.3 bits (726), Expect = 2.0e-72
Identity = 187/425 (44.00%), Postives = 243/425 (57.18%), Query Frame = 0
Query: 1 MVVNTTPLELSSKEKHKKIEKQ-QGNERRRLNLKERQKKIYPFPNSDVPNMLEQLLKTRL 60
M+V TPL+ SK K K E+ G+E+RR L+ERQKK+YPFP+SDV +MLEQL++ +L
Sbjct: 364 MLVQETPLKSFSKRKETKHERNYDGDEKRRPTLRERQKKVYPFPDSDVADMLEQLIEKQL 423
Query: 61 IELPECKRPEEIEKV--PNYCMYHRVISHPVEKCFVLKELILRLAKEGKIELDLEEVAQS 120
I+LPECKRPE+ KV PNYC YHRVISHPVEKCFVLKELIL+LA+E KIELD++EVAQ+
Sbjct: 424 IQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLARENKIELDIDEVAQT 483
Query: 121 NHATIATNTCSQMCFGLLHDQEVHLLQFGTIEPITIWFH-----------HEVSGDKSQD 180
NH + T S + LL+DQ L+QFGT EPI + F E S D+ ++
Sbjct: 484 NHVAV-NMTSSVLPSILLYDQRESLIQFGTFEPILVRFQQKTMTSNSQNKEETSEDEGEE 543
Query: 181 PVNL-------------------------ISNEDKG------------------------ 240
+ + IS++ KG
Sbjct: 544 WIGVTHKKERQIGSVQTNSNFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKDKDFFQPRR 603
Query: 241 ---------------------------STIMTQEDG---------ISKEIKQRTSVFDRI 300
+T + + D S EIKQRT VF RI
Sbjct: 604 SINLAEFLPRSFLEDHPEKILEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTFVFHRI 663
Query: 301 EPSTTQTSVFQRMSMVVAREEDQSLTSAITRHSVFQRLSVSASRKCRPSTTAFDRLKVRS 327
+P T ++SVFQR+SM + EE+Q TS R S F+RLS+S +K RPST+AFDRLK+ +
Sbjct: 664 KPLTIRSSVFQRLSMAMKEEENQCPTSTYARTSAFKRLSISTLKKDRPSTSAFDRLKMIN 723
BLAST of Lag0008902 vs. ExPASy TrEMBL
Match:
A0A5A7SRE2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00210 PE=4 SV=1)
HSP 1 Score: 301.2 bits (770), Expect = 7.7e-78
Identity = 182/363 (50.14%), Postives = 238/363 (65.56%), Query Frame = 0
Query: 1 MVVNTTPLELSSKEKHKKIEK-QQGNERRRLNLKERQKKIYPFPNSDVPNMLEQLLKTRL 60
M+V TPL+ SK K K ++ G+E+RR L+ERQKK+YPFP+SDV +MLEQL++ +L
Sbjct: 372 MLVQETPLKSFSKRKETKHKRNHDGDEKRRPTLRERQKKVYPFPDSDVADMLEQLIEKQL 431
Query: 61 IELPECKRPEEIEKV--PNYCMYHRVISHPVEKCFVLKELILRLAKEGKIELDLEEVAQS 120
I+LPECKRPE++ KV PNYC YHRVISH VEKCFVLKELI +LA+E KIELD++EVAQ+
Sbjct: 432 IQLPECKRPEQVGKVDDPNYCKYHRVISHLVEKCFVLKELIRKLARENKIELDIDEVAQT 491
Query: 121 NHATIATNTCSQMCFG-LLHDQEVHLLQFGTIEPITIWFH-----------HEVSGDKSQ 180
NH +A N S + LL+DQ L+QFGT EPI + F E S D+ +
Sbjct: 492 NH--VAVNMTSSVPLSILLYDQRKSLIQFGTFEPILVRFQQKTMTSNSQNKEEPSEDEGE 551
Query: 181 DPVNLISN---EDKGSTIMT-------------------QEDGISKEIKQRTSVFDRIEP 240
+ + + ED I+ +E S EIKQRTSVFD I+P
Sbjct: 552 EWIEFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEIKQRTSVFDCIKP 611
Query: 241 STTQTSVFQRMSMVVAREEDQSLTSAITRHSVFQRLSVSASRKCRPSTTAFDRLKVRSDQ 300
TT++SVFQR+SM +EE+Q T + S F+RLS+S S+K RPST FDRLK+ +DQ
Sbjct: 612 LTTRSSVFQRLSMATKKEENQCPTFTYAQTSAFKRLSISISKKHRPSTYTFDRLKMTNDQ 671
Query: 301 RERKVDSSEVKLFDEVNNDKKLHSTISSRMKRKFSVLINTEGSLKVKPNLIILTNPTNEG 327
++R++ + + K F E N+D K+HS + SRMKRK SV INTEGSL VKP II TNP NEG
Sbjct: 672 QQREMKTLKAKPFQEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNPINEG 731
BLAST of Lag0008902 vs. ExPASy TrEMBL
Match:
A0A5A7URH1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17350G00010 PE=4 SV=1)
HSP 1 Score: 297.4 bits (760), Expect = 1.1e-76
Identity = 176/338 (52.07%), Postives = 228/338 (67.46%), Query Frame = 0
Query: 1 MVVNTTPLELSSKEKHKKIE-KQQGNERRRLNLKERQKKIYPFPNSDVPNMLEQLLKTRL 60
MVV+ TPL+ SK K KIE K G+E+R+ LKERQ+K+YPFP+SDV +MLEQLL+ +L
Sbjct: 398 MVVHATPLKSFSKRKETKIERKHDGDEKRQSTLKERQEKVYPFPDSDVADMLEQLLENQL 457
Query: 61 IELPECKRPEEIEKV--PNYCMYHRVISHPVEKCFVLKELILRLAKEGKIELDLEEVAQS 120
I+LPECKRPE+ KV PNYC YHRVISHPVEKCFVLKELIL+LA+E KIELD++EVAQ+
Sbjct: 458 IQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDEVAQT 517
Query: 121 NHATIATNTCSQMCFGLLHDQEVHLLQFGTIEPITIWFHHEVSGDKSQDPVNLISNEDKG 180
NHA +M + ++ LQ + + D ++ + + +
Sbjct: 518 NHAI-------EMTSNPIKGKDEDFLQLRRSITLAEFLPRSFLEDDPEEILEVTACHAAS 577
Query: 181 STIMTQEDGISK------EIKQRTSVFDRIEPSTTQTSVFQRMSMVVAREEDQSLTSAIT 240
+ G SK EI QRTSVFDRI+PSTT++SVFQR+S+ EE+Q T T
Sbjct: 578 IVEVDNNYGSSKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTFIYT 637
Query: 241 RHSVFQRLSVSASRKCRPSTTAFDRLKVRSDQRERKVDSSEVKLFDEVNNDKKLHSTISS 300
R S +RLS+S +K RPST++FDRLK+ +DQ++R++ SS+ K F E N+D K+HS + S
Sbjct: 638 RTSTSKRLSISTLKKDRPSTSSFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPS 697
Query: 301 RMKRKFSVLINTEGSLKVKPNLIILTNPTNEGSDQYYV 330
RMKRK V INTEGSL VKP II TNPTNEG +Q V
Sbjct: 698 RMKRKLFVDINTEGSLTVKPRFIIFTNPTNEGDEQILV 728
BLAST of Lag0008902 vs. ExPASy TrEMBL
Match:
A0A5A7SHQ6 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00030 PE=4 SV=1)
HSP 1 Score: 297.0 bits (759), Expect = 1.5e-76
Identity = 195/428 (45.56%), Postives = 245/428 (57.24%), Query Frame = 0
Query: 1 MVVNTTPLELSSKEKHKKIE-KQQGNERRRLNLKERQKKIYPFPNSDVPNMLEQLLKTRL 60
M+V+ TPL+ SK K KIE K GNE+R+ LKERQ+K+YPFP+SDV +MLEQLL+ +L
Sbjct: 51 MIVHETPLKSFSKRKETKIERKHDGNEKRQSTLKERQEKVYPFPDSDVADMLEQLLENQL 110
Query: 61 IELPECKRPEEIEKV--PNYCMYHRVISHPVEKCFVLKELILRLAKEGKIELDLEEVAQS 120
I+LPECKRPE+ EKV PNYC YHRVISHPVEKCFVLKELIL+LA+E KIELD++EVAQ+
Sbjct: 111 IQLPECKRPEQAEKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDEVAQT 170
Query: 121 NHATIATNTCSQMCFGLLHDQEVHLLQFGTIEPITIWFHHE------------------- 180
NH I T + L DQ L+QFGT PI + F
Sbjct: 171 NHVAIEM-TSNVPPLTQLDDQRKSLIQFGTFAPILVLFQQRIVTINSQNKEAHGKDDGEG 230
Query: 181 ---VSGDKSQDPVNL--------------ISNEDKGS----------------------- 240
V+ K + P ++ IS + KGS
Sbjct: 231 WITVTRQKGRQPNSIKKESRFHQKYAKGSISYKKKGSRNKKMWNPKPIKGKDEDFLQLRR 290
Query: 241 --TI-----------------------------------MTQEDGISKEIKQRTSVFDRI 300
T+ ++E S EI QRTSVFDRI
Sbjct: 291 SITLAEFLPRSFLEGHPEEILEVTACHAASIVEVDNNYGSSKEVNNSNEINQRTSVFDRI 350
Query: 301 EPSTTQTSVFQRMSMVVAREEDQSLTSAITRHSVFQRLSVSASRKCRPSTTAFDRLKVRS 330
+PSTT++SVFQR+SM EE+Q T TR S F+RLS+S S+K RPST+AFDRLK+ +
Sbjct: 351 KPSTTRSSVFQRLSMATKEEENQCPTFIYTRTSTFKRLSISTSKKDRPSTSAFDRLKMTN 410
BLAST of Lag0008902 vs. ExPASy TrEMBL
Match:
A0A5A7TGM1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00260 PE=4 SV=1)
HSP 1 Score: 288.1 bits (736), Expect = 6.8e-74
Identity = 187/425 (44.00%), Postives = 241/425 (56.71%), Query Frame = 0
Query: 1 MVVNTTPLELSSKEKHKKIEK-QQGNERRRLNLKERQKKIYPFPNSDVPNMLEQLLKTRL 60
M+V TPL+ SK K +K E+ G+E+RR L+ERQKK+YPFP+SDV +MLEQL++ +L
Sbjct: 183 MLVQETPLKSFSKRKERKHERNHNGDEKRRPTLRERQKKVYPFPDSDVADMLEQLIEKQL 242
Query: 61 IELPECKRPEEIEKV--PNYCMYHRVISHPVEKCFVLKELILRLAKEGKIELDLEEVAQS 120
I+LP+CKRPE+ KV PNYC YHRVISH VEKCFVLKELIL+L +E KIELD++EVAQ+
Sbjct: 243 IQLPKCKRPEQAGKVDDPNYCKYHRVISHHVEKCFVLKELILKLTRENKIELDIDEVAQT 302
Query: 121 NHATIATNTCSQMCFGLLHDQEVHLLQFGTIEPITIWFHHEVSGDKSQDPVNLISNED-- 180
NH + T S LL+DQ L+QFGT EPI + F +V SQ+ I +E
Sbjct: 303 NHVAV-NMTSSVPPSILLYDQRESLIQFGTFEPILVRFQQKVMTSNSQNKEEPIEDEGEE 362
Query: 181 ----------KGSTIMT------------------------------------------- 240
+ S++ T
Sbjct: 363 WIVVAHKKERQTSSVQTNSHFHQKHSKGNISHKKKGRRNKKMWKSKPIKGKDEDFLQPRQ 422
Query: 241 -----------------------------------------QEDGISKEIKQRTSVFDRI 300
+E S EIKQRTSVFDRI
Sbjct: 423 SITLAEFFPRSFLEDHPKEILEVTACHTTSIVEFDNNYDSYEEVDNSNEIKQRTSVFDRI 482
Query: 301 EPSTTQTSVFQRMSMVVAREEDQSLTSAITRHSVFQRLSVSASRKCRPSTTAFDRLKVRS 327
+P TT++SVFQR+S+ EE+Q TS TR S F+ LS+S S+K RPST+AFDRLK+ +
Sbjct: 483 KPLTTRSSVFQRLSITTKEEENQCPTSTCTRTSAFKSLSISTSKKDRPSTSAFDRLKMIN 542
BLAST of Lag0008902 vs. ExPASy TrEMBL
Match:
A0A5A7SUW1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G002250 PE=4 SV=1)
HSP 1 Score: 284.3 bits (726), Expect = 9.8e-73
Identity = 187/425 (44.00%), Postives = 243/425 (57.18%), Query Frame = 0
Query: 1 MVVNTTPLELSSKEKHKKIEKQ-QGNERRRLNLKERQKKIYPFPNSDVPNMLEQLLKTRL 60
M+V TPL+ SK K K E+ G+E+RR L+ERQKK+YPFP+SDV +MLEQL++ +L
Sbjct: 364 MLVQETPLKSFSKRKETKHERNYDGDEKRRPTLRERQKKVYPFPDSDVADMLEQLIEKQL 423
Query: 61 IELPECKRPEEIEKV--PNYCMYHRVISHPVEKCFVLKELILRLAKEGKIELDLEEVAQS 120
I+LPECKRPE+ KV PNYC YHRVISHPVEKCFVLKELIL+LA+E KIELD++EVAQ+
Sbjct: 424 IQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLARENKIELDIDEVAQT 483
Query: 121 NHATIATNTCSQMCFGLLHDQEVHLLQFGTIEPITIWFH-----------HEVSGDKSQD 180
NH + T S + LL+DQ L+QFGT EPI + F E S D+ ++
Sbjct: 484 NHVAV-NMTSSVLPSILLYDQRESLIQFGTFEPILVRFQQKTMTSNSQNKEETSEDEGEE 543
Query: 181 PVNL-------------------------ISNEDKG------------------------ 240
+ + IS++ KG
Sbjct: 544 WIGVTHKKERQIGSVQTNSNFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKDKDFFQPRR 603
Query: 241 ---------------------------STIMTQEDG---------ISKEIKQRTSVFDRI 300
+T + + D S EIKQRT VF RI
Sbjct: 604 SINLAEFLPRSFLEDHPEKILEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTFVFHRI 663
Query: 301 EPSTTQTSVFQRMSMVVAREEDQSLTSAITRHSVFQRLSVSASRKCRPSTTAFDRLKVRS 327
+P T ++SVFQR+SM + EE+Q TS R S F+RLS+S +K RPST+AFDRLK+ +
Sbjct: 664 KPLTIRSSVFQRLSMAMKEEENQCPTSTYARTSAFKRLSISTLKKDRPSTSAFDRLKMIN 723
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0032121.1 | 1.6e-77 | 50.14 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0056121.1 | 2.3e-76 | 52.07 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0025376.1 | 3.0e-76 | 45.56 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| KAA0040811.1 | 1.4e-73 | 44.00 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| KAA0033746.1 | 2.0e-72 | 44.00 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SRE2 | 7.7e-78 | 50.14 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5A7URH1 | 1.1e-76 | 52.07 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5A7SHQ6 | 1.5e-76 | 45.56 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
| A0A5A7TGM1 | 6.8e-74 | 44.00 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
| A0A5A7SUW1 | 9.8e-73 | 44.00 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
