Lag0007934 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0007934
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	S-protein homolog
Location	chr9: 8557587 .. 8558009 (+)
RNA-Seq Expression	Lag0007934
Synteny	Lag0007934

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATCCATAAGAGGTGCATTATCTTGCTTGTAATATCCATTTGTTTGAGCATTGAACTAATGCAAGTGAGCAATGCACTATTCGACAAGTATTATGTTCACATCATCAACGGCTTCAACAACGAGACAATTGGAGCTCATTGTTCGTCGAAAGATAACGACCTAGGCAACCAATTCATCCCGGTCGGGGGCGAGTTCCAATGGAATTTCCGAACGAACTTCCTTGAAACAACATTGTTCGAATGTCATATTTGGTGGACGGAAGGGCACATTACGTATAAGGCATATTATCACAATGATGAGTTTGAGAACATTCTATGTGGAGATGGACATTGCAGATGGAAAGCAGATGCTCGGGGAATTTCTGCTTTCCATGTTGAGCAAAATGTGTATGAATTGCAATACACATGGCAACATTGA

mRNA sequence

ATGGGTATCCATAAGAGGTGCATTATCTTGCTTGTAATATCCATTTGTTTGAGCATTGAACTAATGCAAGTGAGCAATGCACTATTCGACAAGTATTATGTTCACATCATCAACGGCTTCAACAACGAGACAATTGGAGCTCATTGTTCGTCGAAAGATAACGACCTAGGCAACCAATTCATCCCGGTCGGGGGCGAGTTCCAATGGAATTTCCGAACGAACTTCCTTGAAACAACATTGTTCGAATGTCATATTTGGTGGACGGAAGGGCACATTACGTATAAGGCATATTATCACAATGATGAGTTTGAGAACATTCTATGTGGAGATGGACATTGCAGATGGAAAGCAGATGCTCGGGGAATTTCTGCTTTCCATGTTGAGCAAAATGTGTATGAATTGCAATACACATGGCAACATTGA

Coding sequence (CDS)

ATGGGTATCCATAAGAGGTGCATTATCTTGCTTGTAATATCCATTTGTTTGAGCATTGAACTAATGCAAGTGAGCAATGCACTATTCGACAAGTATTATGTTCACATCATCAACGGCTTCAACAACGAGACAATTGGAGCTCATTGTTCGTCGAAAGATAACGACCTAGGCAACCAATTCATCCCGGTCGGGGGCGAGTTCCAATGGAATTTCCGAACGAACTTCCTTGAAACAACATTGTTCGAATGTCATATTTGGTGGACGGAAGGGCACATTACGTATAAGGCATATTATCACAATGATGAGTTTGAGAACATTCTATGTGGAGATGGACATTGCAGATGGAAAGCAGATGCTCGGGGAATTTCTGCTTTCCATGTTGAGCAAAATGTGTATGAATTGCAATACACATGGCAACATTGA

Protein sequence

MGIHKRCIILLVISICLSIELMQVSNALFDKYYVHIINGFNNETIGAHCSSKDNDLGNQFIPVGGEFQWNFRTNFLETTLFECHIWWTEGHITYKAYYHNDEFENILCGDGHCRWKADARGISAFHVEQNVYELQYTWQH

Homology

[Close]

BLAST of Lag0007934 vs. NCBI nr
Match: KAA0050599.1 (pumilio-like protein 15-like [Cucumis melo var. makuwa] >TYK07841.1 pumilio-like protein 15-like [Cucumis melo var. makuwa])

HSP 1 Score: 214.2 bits (544), Expect = 7.4e-52
Identity = 97/140 (69.29%), Postives = 110/140 (78.57%), Query Frame = 0


Query: 1   MGIHKRCIILLVISICLSIELMQVSNALFDKYYVHIINGFNNETIGAHCSSKDNDLGNQF 60
           MG  K  IILLVIS  LS EL QVSNA FDK+YVHIINGF+N TIGAHC SKD+DL NQF
Sbjct: 1   MGNRKSFIILLVISTALSTELTQVSNAFFDKFYVHIINGFDNATIGAHCRSKDDDLSNQF 60

Query: 61  IPVGGEFQWNFRTNFLETTLFECHIWWTEGHITYKAYYHNDEFENILCGDGHCRWKADAR 120
           IPV GEFQW+FRTNF  TTLF CH+WW  G ITYKAY+H ++FE  +CGDGHCRWKAD +
Sbjct: 61  IPVNGEFQWHFRTNFFGTTLFYCHVWWIGGQITYKAYWHENDFELSVCGDGHCRWKADPQ 120

Query: 121 GISAFHVEQNVYELQYTWQH 141
           GIS + V+Q  Y L Y W+H
Sbjct: 121 GISCYFVDQKRYALTYLWEH 140

[Close]

BLAST of Lag0007934 vs. NCBI nr
Match: XP_031745088.1 (S-protein homolog 3-like [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 5.3e-50
Identity = 94/129 (72.87%), Postives = 108/129 (83.72%), Query Frame = 0


Query: 1   MGIHKRCIILLVISICLSIELMQVSNALFDKYYVHIINGFNNETIGAHCSSKDNDLGNQF 60
           MGI K  IILLVISI LS EL QVS+ALF+K+YVHIINGF+N TIGAHC SKD+DLGNQF
Sbjct: 1   MGIRKSYIILLVISIALSAELTQVSSALFEKFYVHIINGFDNATIGAHCRSKDDDLGNQF 60

Query: 61  IPVGGEFQWNFRTNFLETTLFECHIWWTEGHITYKAYYHNDEFENILCGDGHCRWKADAR 120
           IPV  EF WNFRTNFL TTLF CH+WW  GHITYKAY+H ++FE   CGDGHCRWKAD +
Sbjct: 61  IPVNAEFHWNFRTNFLGTTLFYCHVWWIGGHITYKAYWHENDFELSRCGDGHCRWKADPQ 120

Query: 121 GISAFHVEQ 130
           G+S++ V+Q
Sbjct: 121 GVSSYFVDQ 129

[Close]

BLAST of Lag0007934 vs. NCBI nr
Match: KAE8646226.1 (hypothetical protein Csa_016670 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 5.3e-50
Identity = 94/129 (72.87%), Postives = 108/129 (83.72%), Query Frame = 0


Query: 1   MGIHKRCIILLVISICLSIELMQVSNALFDKYYVHIINGFNNETIGAHCSSKDNDLGNQF 60
           MGI K  IILLVISI LS EL QVS+ALF+K+YVHIINGF+N TIGAHC SKD+DLGNQF
Sbjct: 1   MGIRKSYIILLVISIALSAELTQVSSALFEKFYVHIINGFDNATIGAHCRSKDDDLGNQF 60

Query: 61  IPVGGEFQWNFRTNFLETTLFECHIWWTEGHITYKAYYHNDEFENILCGDGHCRWKADAR 120
           IPV  EF WNFRTNFL TTLF CH+WW  GHITYKAY+H ++FE   CGDGHCRWKAD +
Sbjct: 61  IPVNAEFHWNFRTNFLGTTLFYCHVWWIGGHITYKAYWHENDFELSRCGDGHCRWKADPQ 120

Query: 121 GISAFHVEQ 130
           G+S++ V+Q
Sbjct: 121 GVSSYFVDQ 129

[Close]

BLAST of Lag0007934 vs. NCBI nr
Match: KAG2712057.1 (hypothetical protein I3760_04G107500 [Carya illinoinensis] >KAG6717558.1 hypothetical protein I3842_04G106900 [Carya illinoinensis] >KAG7983312.1 hypothetical protein I3843_04G099800 [Carya illinoinensis])

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-25
Identity = 59/132 (44.70%), Postives = 85/132 (64.39%), Query Frame = 0


Query: 9   ILLVISICLSIELMQVSNALFDKYYVHIINGFNNETIGAHCSSKDNDLGNQFIPVGGEFQ 68
           + +V+++C+   L  V+ +L  KY+VHIINGF NET+GAHC SKD+DLG Q IPV G+F+
Sbjct: 10  LFMVLTLCMGQSL--VTPSLIPKYHVHIINGFQNETLGAHCKSKDDDLGIQQIPVHGDFE 69

Query: 69  WNFRTNFLETTLFECHIWWTEGHITYKAYYHNDE-FENILCGDGHCRWKADARGISAFHV 128
           W+F  NF+ +TLF C +WW+ G   + A+   D+ F N  CG   C WKA   GI  + +
Sbjct: 70  WHFHVNFIGSTLFFCRLWWSGGDKVFDAFVAADKRFINNDCGPSDCWWKALEDGIYLYSI 129

Query: 129 EQNVYELQYTWQ 140
           +   Y  +Y W+
Sbjct: 130 KHEEYRRKYLWE 139

[Close]

BLAST of Lag0007934 vs. NCBI nr
Match: XP_042974627.1 (uncharacterized protein LOC122306260 [Carya illinoinensis])

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-25
Identity = 59/132 (44.70%), Postives = 85/132 (64.39%), Query Frame = 0


Query: 9   ILLVISICLSIELMQVSNALFDKYYVHIINGFNNETIGAHCSSKDNDLGNQFIPVGGEFQ 68
           + +V+++C+   L  V+ +L  KY+VHIINGF NET+GAHC SKD+DLG Q IPV G+F+
Sbjct: 138 LFMVLTLCMGQSL--VTPSLIPKYHVHIINGFQNETLGAHCKSKDDDLGIQQIPVHGDFE 197

Query: 69  WNFRTNFLETTLFECHIWWTEGHITYKAYYHNDE-FENILCGDGHCRWKADARGISAFHV 128
           W+F  NF+ +TLF C +WW+ G   + A+   D+ F N  CG   C WKA   GI  + +
Sbjct: 198 WHFHVNFIGSTLFFCRLWWSGGDKVFDAFVAADKRFINNDCGPSDCWWKALEDGIYLYSI 257

Query: 129 EQNVYELQYTWQ 140
           +   Y  +Y W+
Sbjct: 258 KHEEYRRKYLWE 267

[Close]

BLAST of Lag0007934 vs. ExPASy Swiss-Prot
Match: F4JLQ5 (S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.2e-09
Identity = 44/156 (28.21%), Postives = 69/156 (44.23%), Query Frame = 0


Query: 1   MGIHKRCIILLVISICLSIELMQV--------------SNALF--DKYYVHIINGFNNE- 60
           M I K+ + L ++ I ++ +L Q               +N++F   K  V I N   N+ 
Sbjct: 1   MDIPKQYLSLFILIIFITTKLSQADHKNDIPVPNDPSSTNSVFPTSKRTVEINNDLGNQL 60

Query: 61  TIGAHCSSKDNDLGNQFIPVGGEFQWNFRTNFLETTLFECHIWWTEGHITYKAYY-HNDE 120
           T+  HC SKD+DLGN+ +  G  + ++F   F   TL+ C   W     ++  Y  H D 
Sbjct: 61  TLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSWPNESHSFDIYKDHRDS 120

Query: 121 FENILCGDGHCRWKADARGISAFHVEQNVYELQYTW 139
             +  C    C WK    G   F+ E   ++L Y W
Sbjct: 121 GGDNKCESDRCVWKIRRNGPCRFNDETKQFDLCYPW 156

[Close]

BLAST of Lag0007934 vs. ExPASy Swiss-Prot
Match: F4JLS0 (S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 39/147 (26.53%), Postives = 64/147 (43.54%), Query Frame = 0


Query: 7   CIILLVISICLSIELMQVSNAL-------------FDKYYVHIINGF-NNETIGAHCSSK 66
           CI   +++IC S+ L    + L               ++ V ++NG    ET+  HC SK
Sbjct: 3   CIKQFLLAICFSLALTCQDHVLVGGTTTRDIIVPKISEWQVTVVNGLTTGETLFIHCKSK 62

Query: 67  DNDLGNQFIPVGGEFQWNFRTNFLETTLFECHIWWTEGHITYKAYYHNDEFENILCGDGH 126
           ++DLG   +     F WNF  N L +T F C++    GH+    ++ +D      CG  +
Sbjct: 63  EDDLGEINLKFRNRFSWNFGENMLHSTFFWCYMNKDNGHMNVNVFW-DDVILFHRCGWKN 122

Query: 127 CRWKADARGISAFHVEQNVYELQYTWQ 140
           C W A   G+  ++       L   W+
Sbjct: 123 CIWTAKTDGLYLWNSASGEDVLSRKWE 148

[Close]

BLAST of Lag0007934 vs. ExPASy Swiss-Prot
Match: Q40975 (Self-incompatibility protein S1 OS=Papaver rhoeas OX=33128 GN=S1 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-08
Identity = 41/133 (30.83%), Postives = 65/133 (48.87%), Query Frame = 0


Query: 9   ILLVISICLSIELMQVSNALFDKYYVHIIN-GFNNETIGAHCSSKDNDLGNQFIPVGGEF 68
           +++++S  LS      S+  F    V I+N   N  +IG HC SKDNDL NQ +  G + 
Sbjct: 6   VIVLLSFFLS-----KSSGFFPVIEVRIMNRRGNGRSIGIHCRSKDNDLQNQTVTSGHDM 65

Query: 69  QWNFRTNFLETTLFECHIWWTE----GHITYKAYYHNDEFENILCGDGHCRWKADARGIS 128
            ++FR +F  TT F C + W +    G  +Y+A   +D      C    C WK    G+ 
Sbjct: 66  SFSFREDFFHTTHFYCDLQWDKETKFGFYSYQAKRDDDG----RC-SSQCLWKIMDDGLY 125

Query: 129 AFHVEQNVYELQY 137
            F  E  ++++ +
Sbjct: 126 GFDQEHQIWQIYH 128

[Close]

BLAST of Lag0007934 vs. ExPASy Swiss-Prot
Match: Q2HQ46 (S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-08
Identity = 32/93 (34.41%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 31  KYYVHIINGF-NNETIGAHCSSKDNDLGNQFIPVGGEFQWNFRTNFLETTLFECHIWWTE 90
           ++ V + NG    ET+  HC SK+NDLG+  +     F WNF  N L +TLF C++   +
Sbjct: 40  EWQVTVANGLTTGETLFIHCKSKENDLGDINLKFLDRFSWNFGENMLHSTLFWCYMSKDD 99

Query: 91  GHITYKAYYHNDEFENILCGDGHCRWKADARGI 123
           GH+  K ++ +D      C   +C W A   G+
Sbjct: 100 GHMNVKVFW-DDVILFHRCDWKNCVWTAKNDGL 131

[Close]

BLAST of Lag0007934 vs. ExPASy Swiss-Prot
Match: P0DN92 (S-protein homolog 24 OS=Arabidopsis thaliana OX=3702 GN=SPH24 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-06
Identity = 40/142 (28.17%), Postives = 66/142 (46.48%), Query Frame = 0


Query: 7   CIILLVISICLSI---ELMQVSNALFDKYYVHI----INGFNNETIGAHCSSKDNDLGNQ 66
           C I +V  + +S+   E +Q+  A  +    H+    I   N+  +G HC S+D+DLG  
Sbjct: 14  CSIFIVSIVVISLICSEALQIQEAK-EPIRGHLTRVTIQNDNDYLLGIHCKSRDDDLGFH 73

Query: 67  FIPVGGEFQWNFRTNFLETTLFECHIWWTEGHI---TYKAYYHNDEFENILCGDGHCRWK 126
            +  G  F W F  NF  +TL+ C   +++G +    ++ Y  N +F        +C WK
Sbjct: 74  ILAKGELFGWKFHVNFCYSTLYFC--GFSQGQMKKGVFEIYRANRDFYRC----ANCTWK 133

Query: 127 ADARGISAFHVEQNVYELQYTW 139
           A+  GI  +  +     L Y W
Sbjct: 134 AEKDGIYGYSEDPVKGYLFYNW 148

The following BLAST results are available for this feature:

BLAST of Lag0007934 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050599.1	7.4e-52	69.29	pumilio-like protein 15-like [Cucumis melo var. makuwa] >TYK07841.1 pumilio-like...	[more]
XP_031745088.1	5.3e-50	72.87	S-protein homolog 3-like [Cucumis sativus]	[more]
KAE8646226.1	5.3e-50	72.87	hypothetical protein Csa_016670 [Cucumis sativus]	[more]
KAG2712057.1	1.2e-25	44.70	hypothetical protein I3760_04G107500 [Carya illinoinensis] >KAG6717558.1 hypothe...	[more]
XP_042974627.1	1.2e-25	44.70	uncharacterized protein LOC122306260 [Carya illinoinensis]	[more]

BLAST of Lag0007934 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JLQ5	6.2e-09	28.21	S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1	[more]
F4JLS0	1.1e-08	26.53	S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1	[more]
Q40975	1.4e-08	30.83	Self-incompatibility protein S1 OS=Papaver rhoeas OX=33128 GN=S1 PE=1 SV=1	[more]
Q2HQ46	1.8e-08	34.41	S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1	[more]
P0DN92	1.3e-06	28.17	S-protein homolog 24 OS=Arabidopsis thaliana OX=3702 GN=SPH24 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 34..138 e-value: 1.1E-22 score: 80.5
IPR010264	Plant self-incompatibility S1	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 24..124
None	No IPR available	PANTHER	PTHR31232:SF59	SUBFAMILY NOT NAMED	coord: 24..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0007934.1	Lag0007934.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity