Lag0007802 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0007802
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr9: 5052880 .. 5053461 (+)
RNA-Seq ExpressionLag0007802
SyntenyLag0007802
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTTCTTGATGGAGACAAAGTGTCAAGGGAACAAAGATGAGAGTATTAAAAGAACTTTGCAGTTTGAGTGTGGTTTTGTAGTCCCTAGCTTGGGCTATAGCGGGGGTTTACTCCTAATGTGGAATAAAGATATCGATGTAACTCTTAAATCCTTTTCGAAAGGGCACATTGATGTTTTAGTTAAGGAAAACGGGTGGCAGTGGAGGTTCACAAGAATTTATGGGAATCCAAACAGGGACCTTCATCATGAAACTTGGACGCTCTTAAAGCGATTGGCAGATAATTCTACTTTACCGTGGTTGCTAGGTGGAGACTTTAATGAAATTACTAGTTTGCAAGAAATACGGGGAGGATCGAGGCGGTTGGAAAAATATATGCAAGAGTTTTGCGAGGCTATGGATTCGTGTGGTTTAATTGATCTTGGATTTACCGGTCTGGAATTCACTTGGTGCAATAACCATGTAGATAATGATATTATCTGGGAGAGACTGGATTATTTCCTGATAAATAGTGATATGCAAGAAAGGTGTAGTATCATTGATGTGCAACACCTTGCTTTTCTTGCTTCGGATCTGTAA

mRNA sequence

ATGGTTTTCTTGATGGAGACAAAGTGTCAAGGGAACAAAGATGAGAGTATTAAAAGAACTTTGCAGTTTGAGTGTGGTTTTGTAGTCCCTAGCTTGGGCTATAGCGGGGGTTTACTCCTAATGTGGAATAAAGATATCGATGTAACTCTTAAATCCTTTTCGAAAGGGCACATTGATGTTTTAGTTAAGGAAAACGGGTGGCAGTGGAGGTTCACAAGAATTTATGGGAATCCAAACAGGGACCTTCATCATGAAACTTGGACGCTCTTAAAGCGATTGGCAGATAATTCTACTTTACCGTGGTTGCTAGGTGGAGACTTTAATGAAATTACTAGTTTGCAAGAAATACGGGGAGGATCGAGGCGGTTGGAAAAATATATGCAAGAGTTTTGCGAGGCTATGGATTCGTGTGGTTTAATTGATCTTGGATTTACCGGTCTGGAATTCACTTGGTGCAATAACCATGTAGATAATGATATTATCTGGGAGAGACTGGATTATTTCCTGATAAATAGTGATATGCAAGAAAGGTGTAGTATCATTGATGTGCAACACCTTGCTTTTCTTGCTTCGGATCTGTAA

Coding sequence (CDS)

ATGGTTTTCTTGATGGAGACAAAGTGTCAAGGGAACAAAGATGAGAGTATTAAAAGAACTTTGCAGTTTGAGTGTGGTTTTGTAGTCCCTAGCTTGGGCTATAGCGGGGGTTTACTCCTAATGTGGAATAAAGATATCGATGTAACTCTTAAATCCTTTTCGAAAGGGCACATTGATGTTTTAGTTAAGGAAAACGGGTGGCAGTGGAGGTTCACAAGAATTTATGGGAATCCAAACAGGGACCTTCATCATGAAACTTGGACGCTCTTAAAGCGATTGGCAGATAATTCTACTTTACCGTGGTTGCTAGGTGGAGACTTTAATGAAATTACTAGTTTGCAAGAAATACGGGGAGGATCGAGGCGGTTGGAAAAATATATGCAAGAGTTTTGCGAGGCTATGGATTCGTGTGGTTTAATTGATCTTGGATTTACCGGTCTGGAATTCACTTGGTGCAATAACCATGTAGATAATGATATTATCTGGGAGAGACTGGATTATTTCCTGATAAATAGTGATATGCAAGAAAGGTGTAGTATCATTGATGTGCAACACCTTGCTTTTCTTGCTTCGGATCTGTAA

Protein sequence

MVFLMETKCQGNKDESIKRTLQFECGFVVPSLGYSGGLLLMWNKDIDVTLKSFSKGHIDVLVKENGWQWRFTRIYGNPNRDLHHETWTLLKRLADNSTLPWLLGGDFNEITSLQEIRGGSRRLEKYMQEFCEAMDSCGLIDLGFTGLEFTWCNNHVDNDIIWERLDYFLINSDMQERCSIIDVQHLAFLASDL
Homology
BLAST of Lag0007802 vs. NCBI nr
Match: XP_030970961.1 (uncharacterized protein LOC115991405 [Quercus lobata])

HSP 1 Score: 177.2 bits (448), Expect = 1.4e-40
Identity = 89/192 (46.35%), Postives = 115/192 (59.90%), Query Frame = 0

Query: 2   VFLMETKCQGNKDESIKRTLQFECGFVVPSLGYSGGLLLMWNKDIDVTLKSFSKGHIDVL 61
           VFL ETK +    E  K ++ F  G V+PS G SGGL L+W K+I+V ++SFS  HID +
Sbjct: 32  VFLSETKLRVRSMERKKMSIGFTNGLVIPSHGRSGGLALLWRKEINVDVQSFSDRHIDAI 91

Query: 62  VKEN-GWQWRFTRIYGNPNRDLHHETWTLLKRLADNSTLPWLLGGDFNEITSLQEIRGGS 121
           V E+ G++WR T  YGNP      E+W LLK L+    LPWL  GDFNEI S  E  GG+
Sbjct: 92  VTEDRGFKWRITGFYGNPEVHRRKESWELLKVLSRKFQLPWLCFGDFNEIVSTSEKMGGA 151

Query: 122 RRLEKYMQEFCEAMDSCGLIDLGFTGLEFTWCNNHVDNDIIWERLDYFLINSDMQERCSI 181
           RR ++ M +F EA+D C  +DLGF GLEFTWCN       ++ RLD  L+  D  +    
Sbjct: 152 RRSQRQMDDFREAIDCCRFMDLGFCGLEFTWCNMQEGRHRMYLRLDRALVTQDWADHYKD 211

Query: 182 IDVQHLAFLASD 193
           + V HL    SD
Sbjct: 212 VRVHHLVESVSD 223

BLAST of Lag0007802 vs. NCBI nr
Match: XP_030958760.1 (uncharacterized protein LOC115980671 [Quercus lobata])

HSP 1 Score: 174.5 bits (441), Expect = 9.0e-40
Identity = 88/192 (45.83%), Postives = 114/192 (59.38%), Query Frame = 0

Query: 2   VFLMETKCQGNKDESIKRTLQFECGFVVPSLGYSGGLLLMWNKDIDVTLKSFSKGHIDVL 61
           VFL ETK +    E  K ++ F  G V+PS G SGGL L+W K+I+V ++SFS  HID +
Sbjct: 32  VFLSETKLRVRSMERKKMSIGFTNGLVIPSHGRSGGLALLWRKEINVDVQSFSDRHIDAI 91

Query: 62  VKEN-GWQWRFTRIYGNPNRDLHHETWTLLKRLADNSTLPWLLGGDFNEITSLQEIRGGS 121
           V E+ G++WR T  YGNP      E+W LLK L+    LPWL  GDFNEI S  E  GG+
Sbjct: 92  VTEDRGFKWRITGFYGNPEVHRRKESWELLKVLSRKFQLPWLCFGDFNEIVSTSEKMGGA 151

Query: 122 RRLEKYMQEFCEAMDSCGLIDLGFTGLEFTWCNNHVDNDIIWERLDYFLINSDMQERCSI 181
           RR ++ M +F EA+D C  +DLGF G EFTWCN       ++ RLD  L+  D  +    
Sbjct: 152 RRSQRQMDDFREAIDCCRFMDLGFCGPEFTWCNMQEGRHRMYLRLDRALVTQDWADHYKD 211

Query: 182 IDVQHLAFLASD 193
           + V HL    SD
Sbjct: 212 VRVHHLVESVSD 223

BLAST of Lag0007802 vs. NCBI nr
Match: XP_042988712.1 (uncharacterized protein LOC122316247 [Carya illinoinensis])

HSP 1 Score: 172.2 bits (435), Expect = 4.5e-39
Identity = 78/173 (45.09%), Postives = 109/173 (63.01%), Query Frame = 0

Query: 1   MVFLMETKCQGNKDESIKRTLQFECGFVVPSLGYSGGLLLMWNKDIDVTLKSFSKGHIDV 60
           ++FL ETK    K E +KR L +EC F V S G SGGL LMW ++ ++ ++S+SK HID 
Sbjct: 31  VLFLQETKLHVTKMECVKRLLGYECCFAVSSEGRSGGLALMWQEETNLNVQSYSKNHIDA 90

Query: 61  LV--KENGWQWRFTRIYGNPNRDLHHETWTLLKRLADNSTLPWLLGGDFNEITSLQEIRG 120
           L+   E+  QW+FT +YG+P+ +L  ETW  ++ L    ++PWL+ GDFNE+   QE RG
Sbjct: 91  LIHNAEHDGQWQFTGVYGHPDTELRQETWNTIRSLRGTVSVPWLVCGDFNEVLCWQEKRG 150

Query: 121 GSRRLEKYMQEFCEAMDSCGLIDLGFTGLEFTWCNNHVDNDIIWERLDYFLIN 172
           G  R E+ M+ F + +D C  +DLGF G  FTWCN       + ERLD +L N
Sbjct: 151 GRNRPERQMRTFRQLLDDCSFVDLGFMGPPFTWCNKRDVQHTVSERLDRYLAN 203

BLAST of Lag0007802 vs. NCBI nr
Match: XP_030957478.1 (uncharacterized protein LOC115979567 [Quercus lobata] >XP_030957479.1 uncharacterized protein LOC115979567 [Quercus lobata] >XP_030957480.1 uncharacterized protein LOC115979567 [Quercus lobata] >XP_030957481.1 uncharacterized protein LOC115979567 [Quercus lobata])

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-38
Identity = 88/192 (45.83%), Postives = 113/192 (58.85%), Query Frame = 0

Query: 2   VFLMETKCQGNKDESIKRTLQFECGFVVPSLGYSGGLLLMWNKDIDVTLKSFSKGHIDVL 61
           VFL +TK + N  +  K ++ F  G VVPS G SGGL L+W KDI V ++S+S  HID +
Sbjct: 32  VFLSKTKLKKNSMDKKKGSVGFINGLVVPSHGRSGGLALLWRKDISVNVQSYSDRHIDAI 91

Query: 62  VKEN-GWQWRFTRIYGNPNRDLHHETWTLLKRLADNSTLPWLLGGDFNEITSLQEIRGGS 121
           V E  G++WR T  YGNP      E+W LL+ L     LPWL  GDFNEI S  E  GG+
Sbjct: 92  VTEGLGFKWRITGFYGNPEGHRRKESWDLLRVLNRKFQLPWLCFGDFNEIVSAAEKMGGA 151

Query: 122 RRLEKYMQEFCEAMDSCGLIDLGFTGLEFTWCNNHVDNDIIWERLDYFLINSDMQERCSI 181
           RR +K M EF EA++ C  +DLGF GLEFTWCN       ++ RLD  L+  +  +    
Sbjct: 152 RRSQKQMDEFREAINCCRFMDLGFCGLEFTWCNMQEGRYRMYLRLDRALVTQEWIDNFRD 211

Query: 182 IDVQHLAFLASD 193
           + V HL    SD
Sbjct: 212 MRVHHLVETTSD 223

BLAST of Lag0007802 vs. NCBI nr
Match: XP_023871998.1 (uncharacterized protein LOC111984613 [Quercus suber])

HSP 1 Score: 169.9 bits (429), Expect = 2.2e-38
Identity = 83/194 (42.78%), Postives = 120/194 (61.86%), Query Frame = 0

Query: 1   MVFLMETKCQGNKDESIKRTLQFECGFVVPSLGYSGGLLLMWNKDIDVTLKSFSKGHIDV 60
           ++FLMETK    + +SIK  L+   G VVPS+  SGGL+L+W K++ V+++S+S+ HID 
Sbjct: 31  LIFLMETKLVVTEFDSIKEGLKRSQGLVVPSIRRSGGLVLLWKKELSVSVQSYSESHIDA 90

Query: 61  LVKEN--GWQWRFTRIYGNPNRDLHHETWTLLKRLADNSTLPWLLGGDFNEITSLQEIRG 120
           +V +N    +WRFT  YGNP+     E+W LLKRL+ N++LPW+  GDFNE+    E  G
Sbjct: 91  IVNQNDGSQKWRFTGFYGNPDTSRREESWVLLKRLSSNNSLPWVCAGDFNELMHSGEKEG 150

Query: 121 GSRRLEKYMQEFCEAMDSCGLIDLGFTGLEFTWCNNHVDNDIIWERLDYFLINSDMQERC 180
           G  R  + M  FCEA++SC L DLG+ G +FTW     +   + ERLD  L++S    + 
Sbjct: 151 GRSRPVQQMANFCEAINSCQLRDLGYIGQDFTWSRRLGNRGWVRERLDRALVSSGWAAKF 210

Query: 181 SIIDVQHLAFLASD 193
               + H A  +SD
Sbjct: 211 PKKRLYHKANSSSD 224

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030970961.11.4e-4046.35uncharacterized protein LOC115991405 [Quercus lobata][more]
XP_030958760.19.0e-4045.83uncharacterized protein LOC115980671 [Quercus lobata][more]
XP_042988712.14.5e-3945.09uncharacterized protein LOC122316247 [Carya illinoinensis][more]
XP_030957478.11.3e-3845.83uncharacterized protein LOC115979567 [Quercus lobata] >XP_030957479.1 uncharacte... [more]
XP_023871998.12.2e-3842.78uncharacterized protein LOC111984613 [Quercus suber][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 1..192
e-value: 3.3E-23
score: 84.7
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 2..192
NoneNo IPR availablePANTHERPTHR33710:SF35SUBFAMILY NOT NAMEDcoord: 63..192
NoneNo IPR availablePANTHERPTHR33710BNAC02G09200D PROTEINcoord: 63..192

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0007802.1Lag0007802.1mRNA