Lag0002480.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0002480.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RNase H domain-containing protein
Location	chr4: 43237646 .. 43238062 (-)
Sequence length	417
RNA-Seq Expression	Lag0002480.1
Synteny	Lag0002480.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTACCTTTATGAAATTGATCCATCATGTGCAAGATGTGGATGCTCTAGAGGCTATGGCAATCCGTGATAGCTTGTTTGTTGCTAAGGAAGCTGGTCTGCTGAGGTTGGAGGTGGAAACGGACTCTGCTCGTGTGACGGTCATGGTTCGGTCAAAGCAGAACAATTGTTCTGAGGTAGGAGTCCTGGTGCAAGAGATCAACCAGATCTCGAGGGGGATGCATTTCTGCTCTGTGTGTTGGTGCCGGAGGGAGGTGAATCGGGTGGCACAAATGGCGGCGAGGCAAGTGATGGAGCTGGACATTCAGGGTGTGTGGCTGGAGGAGACGCCGGCGTCTTTGGAGGAGGTGTATCGCAGCGAAATTTTGGACAGTTTTAGTGAAAGCCCGAGGGTTTTGTCCGAGGGCTCCTTTTAG

mRNA sequence

ATGCTTACCTTTATGAAATTGATCCATCATGTGCAAGATGTGGATGCTCTAGAGGCTATGGCAATCCGTGATAGCTTGTTTGTTGCTAAGGAAGCTGGTCTGCTGAGGTTGGAGGTGGAAACGGACTCTGCTCGTGTGACGGTCATGGTTCGGTCAAAGCAGAACAATTGTTCTGAGGTAGGAGTCCTGGTGCAAGAGATCAACCAGATCTCGAGGGGGATGCATTTCTGCTCTGTGTGTTGGTGCCGGAGGGAGGTGAATCGGGTGGCACAAATGGCGGCGAGGCAAGTGATGGAGCTGGACATTCAGGGTGTGTGGCTGGAGGAGACGCCGGCGTCTTTGGAGGAGGTGTATCGCAGCGAAATTTTGGACAGTTTTAGTGAAAGCCCGAGGGTTTTGTCCGAGGGCTCCTTTTAG

Coding sequence (CDS)

ATGCTTACCTTTATGAAATTGATCCATCATGTGCAAGATGTGGATGCTCTAGAGGCTATGGCAATCCGTGATAGCTTGTTTGTTGCTAAGGAAGCTGGTCTGCTGAGGTTGGAGGTGGAAACGGACTCTGCTCGTGTGACGGTCATGGTTCGGTCAAAGCAGAACAATTGTTCTGAGGTAGGAGTCCTGGTGCAAGAGATCAACCAGATCTCGAGGGGGATGCATTTCTGCTCTGTGTGTTGGTGCCGGAGGGAGGTGAATCGGGTGGCACAAATGGCGGCGAGGCAAGTGATGGAGCTGGACATTCAGGGTGTGTGGCTGGAGGAGACGCCGGCGTCTTTGGAGGAGGTGTATCGCAGCGAAATTTTGGACAGTTTTAGTGAAAGCCCGAGGGTTTTGTCCGAGGGCTCCTTTTAG

Protein sequence

MLTFMKLIHHVQDVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQMAARQVMELDIQGVWLEETPASLEEVYRSEILDSFSESPRVLSEGSF

Homology

[Close]

BLAST of Lag0002480.1 vs. NCBI nr
Match: KAF7819670.1 (uncharacterized protein G2W53_025125 [Senna tora])

HSP 1 Score: 68.2 bits (165), Expect = 6.5e-08
Identity = 38/112 (33.93%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 14  VDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRG 73
           VD LEA+A+ + L +AK   +L +EVE DSA+V  ++  K  + S +G+++++I ++S  
Sbjct: 134 VDTLEALAVYEGLMLAKSMSILNIEVEGDSAKVFKLLNKKGTDQSYLGIIIEDILELSSF 193

Query: 74  MHFCSVCWCRREVNRVAQMAARQVMELDIQG----VWLEETPASLEEVYRSE 122
            +F S  W RRE N++A + A   +E         VWLE+ P  +    R +
Sbjct: 194 FNFVSFKWIRRETNKLAHILAHDHVEFMDDNLSTIVWLEDYPLLICNALRQD 245

[Close]

BLAST of Lag0002480.1 vs. NCBI nr
Match: XP_021739472.1 (uncharacterized protein LOC110705848 [Chenopodium quinoa])

HSP 1 Score: 68.2 bits (165), Expect = 6.5e-08
Identity = 35/110 (31.82%), Postives = 66/110 (60.00%), Query Frame = 0


Query: 13  DVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISR 72
           DVD +EAMA+R +L +A E+G LR+ +ETD+ ++   +  ++ + +  G++ ++I +++ 
Sbjct: 154 DVDVVEAMAMRHALVIAMESGFLRVCLETDNIKLHYGLSKQKEDLTAFGLITKDILKLAN 213

Query: 73  GMHFCSVCWCRREVNRVAQMAARQVMELDIQGVWLEETPASLEEVYRSEI 123
             H CS  + +R  N+VA   A+   +     VWLEE P  + EV  +++
Sbjct: 214 SCHECSFAFVKRTGNQVAHSLAKLSSKFVSLRVWLEEYPIEIHEVVMADL 263

[Close]

BLAST of Lag0002480.1 vs. NCBI nr
Match: KAF7835887.1 (uncharacterized protein G2W53_010746 [Senna tora])

HSP 1 Score: 65.5 bits (158), Expect = 4.2e-07
Identity = 42/117 (35.90%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 11  VQDVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQI 70
           +  VD +EA+A+ D L +AK   +L +EVE DSA V  ++     + S +G+++++I  +
Sbjct: 80  ITSVDTMEAVAVYDGLVLAKSMSILNIEVEGDSANVFKLLNRGGVDQSYLGIIIEDILDL 139

Query: 71  SRGMHFCSVCWCRREVNRVAQ-MAARQVMELDIQG---VWLEETPASLEEVYRSEIL 124
           S      S  W RRE NRVA  +A  QV  LD      VWLE+ P  +    R ++L
Sbjct: 140 SNFFSSISFKWIRRETNRVAHILAHEQVDFLDDNSSSLVWLEDYPPLICNALRQDLL 196

[Close]

BLAST of Lag0002480.1 vs. NCBI nr
Match: XP_021763700.1 (uncharacterized protein LOC110728362 [Chenopodium quinoa])

HSP 1 Score: 65.5 bits (158), Expect = 4.2e-07
Identity = 38/110 (34.55%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 13  DVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISR 72
           DVD  EA+A+R +L +  EAG LRL +ET+  ++   ++      +  G +V +I  +SR
Sbjct: 214 DVDIAEALAMRHALSITMEAGFLRLCLETNCLKLHSHLKKGYVTPTPFGRIVSDILTLSR 273

Query: 73  GMHFCSVCWCRREVNRVAQMAARQVMELDIQGVWLEETPASLEEVYRSEI 123
             HFCS  + +R+ NRVA   A+   +     VWLEE P+ + E+  +++
Sbjct: 274 LCHFCSSSFVKRDGNRVAHGLAKACNQFSNLRVWLEECPSDVMELVLADL 323

[Close]

BLAST of Lag0002480.1 vs. NCBI nr
Match: XP_021748542.1 (uncharacterized protein LOC110714345 [Chenopodium quinoa])

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-06
Identity = 37/108 (34.26%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 15  DALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGM 74
           D  EA+A+R +L +A E+G  R+ VETD  ++   V       +E G +V +I  I++G 
Sbjct: 47  DIAEALAMRHALCIAIESGFRRVCVETDCLKLHSYVSKGNAPPTEFGSIVHDILHIAKGC 106

Query: 75  HFCSVCWCRREVNRVAQMAARQVMELDIQGVWLEETPASLEEVYRSEI 123
             CS  + +R  NRVA   A+  +  D   VWLEE P  + E   +++
Sbjct: 107 QSCSFTFVKRSGNRVAHELAKLALSFDSLRVWLEEVPGCIAEFVLADL 154

The following BLAST results are available for this feature:

BLAST of Lag0002480.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7819670.1	6.5e-08	33.93	uncharacterized protein G2W53_025125 [Senna tora]	[more]
XP_021739472.1	6.5e-08	31.82	uncharacterized protein LOC110705848 [Chenopodium quinoa]	[more]
KAF7835887.1	4.2e-07	35.90	uncharacterized protein G2W53_010746 [Senna tora]	[more]
XP_021763700.1	4.2e-07	34.55	uncharacterized protein LOC110728362 [Chenopodium quinoa]	[more]
XP_021748542.1	1.6e-06	34.26	uncharacterized protein LOC110714345 [Chenopodium quinoa]	[more]

BLAST of Lag0002480.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 8..96 e-value: 4.0E-13 score: 49.3
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..103 e-value: 4.6E-7 score: 31.8

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0002480	Lag0002480	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0002480.1.exon1	Lag0002480.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0002480.1	cds.Lag0002480.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0002480.1	Lag0002480.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity