Lag0001862 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0001862
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionplant UBX domain-containing protein 11 isoform X2
Locationchr4: 36305519 .. 36309683 (-)
RNA-Seq ExpressionLag0001862
SyntenyLag0001862
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCTTCTGCGCGCTGAAAATCTCTTCCGTTTTTTCTATCACTCGCCTAACGTTTCTATCAGCGTCTTCTTCGATTTCTATCACTCTTCGGTCCGATTTCTATCACTCGCCTTCGTCTTCTCCGACATTCATCTTCTCCCATCCTCTTCTCCACATTCTATCAGCGTCTTCTTCGATTTCTATCAGCATCATCGACCTCGTTATTATCTCTTCCAGCCCCTGTTCTTGTCCCAATTCTCCATTCGACGACACACACGACATGTCCGAGGATGATCCCGACCCTGATTCTGACCTTCCAAATATGCTCACCGACAACGATGAAGACGACGTCGCTGGCGAAATGAGAAGAATGCATGAGTTTTTTAGAGAGGCTTACGCAGTGTGAGTGAGTGAATGAGTGAGTGATATCTCTGCAAGTGAAAAAGTTTGAAGAGAATTGGAGAGAGTGAGGGAATTAAAAAAAGGAAGAATTTGGGGAGAGGGAAGGCGTGATTCAAACCAAACTGCATCACACAACTTAATAATAATCGGAGGGGGCCCACTCGAAATTCTTCTGTGTGTTTTCTTTATGGGGTTGTTGAAATTCAAGAGCAAAAATGAAAAGTTGGGGTTTTTTTTTTTTATCACTGATAGAATCTATCAGTGATAGAAAAGTTTCTATCAGTGATAGAATTAACTTTCTATCACTGATAGAAAATTTTTCTATCACTGATAGAAAATTTTTCTATCACTGATAGAATCTATCAGTGATAGAAACGTTTCTATCAGTGATAGAAAAGTTTTCTATCACTGATAGAAAAATTTTCTATCAGTGATAGAAATCCTATCACTGATAGAAAATTTTTCTATCACTGATAGAATCTATCAGTGATAGAAACGTTTCTATCAGTGATAGAAAAATTTTTCTATCACTGATAGAAAGTTATCACTGATAGAATCTATCAGTGATAGAAACGTTTCTATCAGTGATAGAAAATATTTCTATCACTGATAGAAAAATTATCTATCAGTGATAGAAGATTTCTATCACTGATAGAAAATTTTTCTATCACTGATAGAAACGTTTCTATCACTGATAGAAAGTTAATTCTATCAATGATAGAAAAGCGTTCTATCAGTGATAGAAAATTTCTATCACTGATAGAAAGTTTTCTATCACTGATAGAAATAATTCTATTAGTGATAGAAGTTTCTATCACTGATTTCTATCACTGATGGATTCTATCAGTGATAGAAAAACTTCTATCACTGATAGAAAGTGATAGAAAAACTTCTATCAGTGATAGAAAAACTTCTATCACTGATAGAATACTTCTATCACTGATAGATTCTATCAGTGATAGAAGTTTTTCTATCACTGATAGAAAGTTTTTCTATCACTGATAGAATCTATCAGTGATAGAAAAACTTTCTATCAGATAGAAAGTTCTCAAGTTTCTATCTGATAGAAGAACTTTCTATCTGATAGAAAGTTTTTCTATCACTGATAGAATCTATCAGTGATAGAAAAATTTTCTATCAGATAGAAAGTTCTCAACTTTCTATCAGATAGAAAGTTCTCAACTTTCTATCTGATAGAAAGTTCTCAAGTTTCTATCTGATAGAAGAAACTTTCTATCTGATAGAAAGTTTTTCTATCACTGATAGAATCTATCAGTGATAGAAAAACTTTCTATCAGATAGAAAGTTCTCAAGTTTCTATCTGATAGAAGAAACTTTCTATCTGATAGAAGAAACTTTCTATCTGATAGAAAGTTTTTCTATCACTGATAGAATCTATCAGTGATAGAAAAATTTTCTATCAGATAGAAAGTTCTCAACTTTCTATCAGATAGAAAGTTCTCTCAACTTTCTATCAGATAGAAAGTTCTCAACTTTCTATCTGATAGAAAGTTTTTCTATCACCGATAGAATCTATCAGTGATAGAAAAATTTTCTATCAGATAGAAAGTTCTCAACTTTCTATCTGATAGAAAAAACTTTCTATCTGATAGAAAAAACTTTCTATCAGATAGAAACCTACCAAAACAAAAATTGAGGAAACCACCAGATGCGCGCGCAAGGGCAAGGGCAAAATAGGGATATAAAAAATTAATTAAAAAATTTTGCCATATTTGCAAATATTTTAAAAAATTGCTAAAATTGCAATTATTTACCCTAATTTTGCCACCCATTACAATTATCCTAAATTTTATACTCATACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCATTGATTTGTTCAAAAAACAATTTAATAATTTTTTTTTAAAAAAATGTATCAACTTTACTTTTTTTTCCCCATTTTTTTCGAACAACTTACTAATTTTTACTTAATACCTGATTAAAAAAGTTAAATTTAATAACAGGTTAAAATAAAATGCAAATTATGAATTTGTATTCTTAAGGTCAATTTTGCCGAACTATAAGATAAACTTAGATAAATATTACTATTTAAATCTTAAATTTGAAAAAACTACAATAAATTTTGTTTGAGCATTTGTTAAAATACATTCCCCACTGCTTTCAATAAATTATAAGACATATGTATCAAAATTTATAGCATTTTAAAGAAAAAATTATTGTAGTATTTTTTATTTATTATTATTTTTTTTGGTTAAAAATTGTGAGATTTGACCAAGTTATTAATCCTTAATTGTACAGTAATCAAACTTAAATATGTAAGCATGTAATTGACATATACCCTTGACTAAGAGGTTAGAAGTTCAAATCTATCTCTTATATCCAAATGTTGTTGAACTAGAAAAAATAGAACGGTTACTTCATAAAACTAACCATTTAGCTCATTAACTTTCAATTTTGCAACAATTTAGTTCTCATCATGAAAATTTCCATCGAAATTAAAGTGTCAAGTTTTACTATGTAATGACTTAATCCTTCTGATTTACAAATTACACATGGTCCTAAATCTTCAAGAATGGTATCATAATTTTAAAAAATTTAATATAAGTCTTCAAACTTTCATTTTTGTGTCTAATATGTAATTCAACTTACCTATTCGACATCATTTAAAACTCTCCAACCCACTAGATACAAAACTAGAACATTAAGATCTCAATTAATAGACATAAAATTCAATTTTATATTTAATGGATTGATTGATTTTTAAAAATTTGGAATATGTTAAAGACCTATAAAGACTATTTTTTTTTTTTTTTTTTGAAAAGGACTAAAATTTAAATTTATATCTAATAGATTGATTGAATTTAAAAAAATCTGAAATATGTTAAATATATATTAAACACAAAGTTGAAAGTTAAAATTTAAGAGCTTAGTTAAACACAAAATTGAAAGTTTTTTTTTTTTTTTTGTTATTTTATTTTATTTTATTTTTTATGGAATTAAATTAACACAGGATTCAAGATTAAACTTGTAAGTTTAATCATTTTTTTATTTGTTTTTTCAATTACCCCGTTTTCTTCTTCGATCGTCTGTGCTCGCGACTGCTCATCGGTTGTCAACCGCCAATCAGCCGATCCTTCTGAAATTTCTTAGTCCAATCTTCACTGAATTTGGTTCAGGTGATCGGAATTTCAGTTTACTTGTTGCGTCATCAATTTGGGTTTGCTCAAAATTTGCGTTTGGAATTGACGGTCTGTGTGAAGTGGATGGATGGATGGAAATTTAAGGGGTCGAATGAAAACGGGTTTTGATTTTATCACGGGGGAGCTAATCGAATTTTGTTTAGTTTTTCTTGGGTGGTTTAGTTTGAAAATTTGACTCTCTTTGTATTTCTTACTGGGTGCGATTTTGCCTTATCGTCATTGTTGTTTACTGGTTATCTGTGCAGATGGAGCAGTCTATATCATCACTGGCATTCAAGGGCTCCATAGCTGAGGCAATTAGCGAATCCAAAAATCAAAGGAAACTCTTTGTGGTTTATATTTCAGGTAAACTTTTATTCGTTCAACCTTTCTCAATGGTTTTGCTGATTTGAATATCTTTTAGATGGGAGGAGGAAAGACAATTTTTGTTACTCTTTAAGTAGTGGGGGAGTAACTTGTCGAAATGTTGGTGTATATCACTAGTTTCTCCCTTTTTCCCCGTATGTTTCTACTTCAATATAGCTAACCTAGAATTACTACTTGGAAAATCACTTTGTTTGTTCATTCCTTTTTGTTATGGTTACCAGGATAG

mRNA sequence

ATGCCCTTCTGCGCGCTGAAAATCTCTTCCGTTTTTTCTATCACTCGCCTAACGTTTCTATCAGCGTCTTCTTCGATTTCTATCACTCTTCGGTCCGATTTCTATCACTCGCCTTCGTCTTCTCCGACATTCATCTTCTCCCATCCTCTTCTCCACATTCTATCAGCGTCTTCTTCGATTTCTATCAGCATCATCGACCTCGTTATTATCTCTTCCAGCCCCTGTTCTTGTCCCAATTCTCCATTCGACGACACACACGACATGTCCGAGGATGATCCCGACCCTGATTCTGACCTTCCAAATATGCTCACCGACAACGATGAAGACGACGTCGCTGGCGAAATGAGAAGAATGCATGAGTTTTTTAGAGAGGCTTACGCAGTGATCGGAATTTCAGTTTACTTGTTGCGTCATCAATTTGGGTTTGCTCAAAATTTGCGTTTGGAATTGACGATGGAGCAGTCTATATCATCACTGGCATTCAAGGGCTCCATAGCTGAGGCAATTAGCGAATCCAAAAATCAAAGGAAACTCTTTGTGGTTTATATTTCAGGATAG

Coding sequence (CDS)

ATGCCCTTCTGCGCGCTGAAAATCTCTTCCGTTTTTTCTATCACTCGCCTAACGTTTCTATCAGCGTCTTCTTCGATTTCTATCACTCTTCGGTCCGATTTCTATCACTCGCCTTCGTCTTCTCCGACATTCATCTTCTCCCATCCTCTTCTCCACATTCTATCAGCGTCTTCTTCGATTTCTATCAGCATCATCGACCTCGTTATTATCTCTTCCAGCCCCTGTTCTTGTCCCAATTCTCCATTCGACGACACACACGACATGTCCGAGGATGATCCCGACCCTGATTCTGACCTTCCAAATATGCTCACCGACAACGATGAAGACGACGTCGCTGGCGAAATGAGAAGAATGCATGAGTTTTTTAGAGAGGCTTACGCAGTGATCGGAATTTCAGTTTACTTGTTGCGTCATCAATTTGGGTTTGCTCAAAATTTGCGTTTGGAATTGACGATGGAGCAGTCTATATCATCACTGGCATTCAAGGGCTCCATAGCTGAGGCAATTAGCGAATCCAAAAATCAAAGGAAACTCTTTGTGGTTTATATTTCAGGATAG

Protein sequence

MPFCALKISSVFSITRLTFLSASSSISITLRSDFYHSPSSSPTFIFSHPLLHILSASSSISISIIDLVIISSSPCSCPNSPFDDTHDMSEDDPDPDSDLPNMLTDNDEDDVAGEMRRMHEFFREAYAVIGISVYLLRHQFGFAQNLRLELTMEQSISSLAFKGSIAEAISESKNQRKLFVVYISG
Homology
[Close]
BLAST of Lag0001862 vs. NCBI nr
Match: XP_038884781.1 (plant UBX domain-containing protein 11 [Benincasa hispida])

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-06
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 152 MEQSISSLAFKGSIAEAISESKNQRKLFVVYISG 186
           MEQSISSLAFKGSIAEAI+ESKNQRKLF+VYISG
Sbjct: 1   MEQSISSLAFKGSIAEAIAESKNQRKLFLVYISG 34

[Close]
BLAST of Lag0001862 vs. NCBI nr
Match: XP_023004995.1 (plant UBX domain-containing protein 11 isoform X2 [Cucurbita maxima])

HSP 1 Score: 62.8 bits (151), Expect = 3.6e-06
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 152 MEQSISSLAFKGSIAEAISESKNQRKLFVVYISG 186
           MEQSISSLAFKGS+AEAI ESKNQRKLFVVYISG
Sbjct: 1   MEQSISSLAFKGSVAEAIVESKNQRKLFVVYISG 34

[Close]
BLAST of Lag0001862 vs. NCBI nr
Match: XP_023004994.1 (plant UBX domain-containing protein 11 isoform X1 [Cucurbita maxima])

HSP 1 Score: 62.8 bits (151), Expect = 3.6e-06
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 152 MEQSISSLAFKGSIAEAISESKNQRKLFVVYISG 186
           MEQSISSLAFKGS+AEAI ESKNQRKLFVVYISG
Sbjct: 1   MEQSISSLAFKGSVAEAIVESKNQRKLFVVYISG 34

[Close]
BLAST of Lag0001862 vs. NCBI nr
Match: TYK17101.1 (plant UBX domain-containing protein 11 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 6.2e-06
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 152 MEQSISSLAFKGSIAEAISESKNQRKLFVVYISG 186
           MEQSISSLAFKGSIAEAI ESKNQRKLF+VYISG
Sbjct: 1   MEQSISSLAFKGSIAEAIVESKNQRKLFLVYISG 34

[Close]
BLAST of Lag0001862 vs. NCBI nr
Match: XP_008445691.2 (PREDICTED: plant UBX domain-containing protein 11 isoform X1 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 6.2e-06
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 152 MEQSISSLAFKGSIAEAISESKNQRKLFVVYISG 186
           MEQSISSLAFKGSIAEAI ESKNQRKLF+VYISG
Sbjct: 61  MEQSISSLAFKGSIAEAIVESKNQRKLFLVYISG 94

[Close]
BLAST of Lag0001862 vs. ExPASy Swiss-Prot
Match: Q9ZW74 (Plant UBX domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=PUX11 PE=1 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 6.1e-04
Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 154 QSISSLAFKGSIAEAISESKNQRKLFVVYISG 186
           +++SSL FKGS+ EAI E+K ++KLFVVYISG
Sbjct: 2   EALSSLTFKGSLPEAIFEAKGKKKLFVVYISG 33

The following BLAST results are available for this feature:
BLAST of Lag0001862 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038884781.12.8e-0694.12plant UBX domain-containing protein 11 [Benincasa hispida][more]
XP_023004995.13.6e-0694.12plant UBX domain-containing protein 11 isoform X2 [Cucurbita maxima][more]
XP_023004994.13.6e-0694.12plant UBX domain-containing protein 11 isoform X1 [Cucurbita maxima][more]
TYK17101.16.2e-0694.12plant UBX domain-containing protein 11 isoform X2 [Cucumis melo var. makuwa][more]
XP_008445691.26.2e-0694.12PREDICTED: plant UBX domain-containing protein 11 isoform X1 [Cucumis melo][more]
BLAST of Lag0001862 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZW746.1e-0465.63Plant UBX domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=PUX11 ... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0001862.1Lag0001862.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016757 glycosyltransferase activity