Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTCTTATCTAGGAAACAGCATGTTAG GTCTTTTGATAGCCCTCTCTTAGCCTGATGTTACCCATCTTCCTTCTCTACGACCACCCAGGAACTCGAACATAAGCTAGACAGAAGCCCTCTCGTTGACAACCGCTACGGGATAGGAAGATCCAACAGGCTCGACCTGCCTCCGAGTTGGAGGAAGCTCCAACTAGCCATATCTAAAGCCTTGGATTCGACCCCCGGCATAATATCCCAACTACTTATTTCCCATTCCTCTCCCCTGGACCCGGAGCAAAGGGAGGTAACCCTATACAAACAAAGGCATCAGGAACGAATGAAAGAGCAGCGACTTCTCGCTCTTCAAGTCCATATCCAGATTCCAATGCTTTAGCCCATATCTCCATCTTCTGGCAAAGCAGATCTTTCTCCCTCAACCTTCACTCACTGGATCGAAGCTATCAACTAACGAGTGAAGCTTATCTCAACCATCCCTCTGCCTCAAGGCAATGCACTCCGGGCTCAGAAGCACCAGAACCTGCTGTAGCTGCATATGACCCTCGAAAGGAAGTACCAGCGAAGAGGCTCCTGGATCAAATGCCTCTCTGA mRNA sequence
ATGGGATTCTTATCTAGGAAACAGCATGTTAGCCTTGGATTCGACCCCCGGCATAATATCCCAACTACTTATTTCCCATTCCTCTCCCCTGGACCCGGAGCAAAGGGAGGTAACCCTATACAAACAAAGGCATCAGGAACGAATGAAAGAGCAGCGACTTCTCGCTCTTCAAGTCCATATCCAGATTCCAATGCTTTAGCCCATATCTCCATCTTCTGGCAAAGCAGATCTTTCTCCCTCAACCTTCACTCACTGGATCGAAGCTATCAACTAACGAGTGAAGCTTATCTCAACCATCCCTCTGCCTCAAGGCAATGCACTCCGGGCTCAGAAGCACCAGAACCTGCTGTAGCTGCATATGACCCTCGAAAGGAAGTACCAGCGAAGAGGCTCCTGGATCAAATGCCTCTCTGA Coding sequence (CDS)
ATGGGATTCTTATCTAGGAAACAGCATGTTAGCCTTGGATTCGACCCCCGGCATAATATCCCAACTACTTATTTCCCATTCCTCTCCCCTGGACCCGGAGCAAAGGGAGGTAACCCTATACAAACAAAGGCATCAGGAACGAATGAAAGAGCAGCGACTTCTCGCTCTTCAAGTCCATATCCAGATTCCAATGCTTTAGCCCATATCTCCATCTTCTGGCAAAGCAGATCTTTCTCCCTCAACCTTCACTCACTGGATCGAAGCTATCAACTAACGAGTGAAGCTTATCTCAACCATCCCTCTGCCTCAAGGCAATGCACTCCGGGCTCAGAAGCACCAGAACCTGCTGTAGCTGCATATGACCCTCGAAAGGAAGTACCAGCGAAGAGGCTCCTGGATCAAATGCCTCTCTGA Protein sequence
MGFLSRKQHVSLGFDPRHNIPTTYFPFLSPGPGAKGGNPIQTKASGTNERAATSRSSSPYPDSNALAHISIFWQSRSFSLNLHSLDRSYQLTSEAYLNHPSASRQCTPGSEAPEPAVAAYDPRKEVPAKRLLDQMPL
Homology
BLAST of Lag0000977 vs. NCBI nr
Match:
KAF5179186.1 (hypothetical protein FRX31_031226 [Thalictrum thalictroides])
HSP 1 Score: 107.1 bits (266), Expect = 1.2e-19
Identity = 60/82 (73.17%), Postives = 61/82 (74.39%), Query Frame = 0
Query: 56 SSSPYPDSNALAHISIFWQSRSFSLNLHSLDRSYQLTSEAYLNHPSASRQCTPGSEAPEP 115 S SP P N H + R S DRSYQLTSEAYLNHPSASRQCTPGSEAPEP Sbjct: 60 SISPKPTLNEALHSPQLSRQR-------SEDRSYQLTSEAYLNHPSASRQCTPGSEAPEP 119 Query: 116 AVAAYDPRKEVPAKRLLDQMPL 138 AVAAYDPRKEVPAKRLLDQMPL Sbjct: 120 AVAAYDPRKEVPAKRLLDQMPL 134
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAF5179186.1 1.2e-19 73.17 hypothetical protein FRX31_031226 [Thalictrum thalictroides] [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G G G A T T C T T A T C T A G G A A A C A G C A T G T T A G C C T T G G A T T C G A C C C C C G G C A T A A T A T C C C A A C T A C T T A T T T C C C A T T C C T C T C C C C T G G A C C C G G A G C A A A G G G A G G T A A C C C T A T A C A A A C A A A G G C A T C A G G A A C G A A T G A A A G A G C A G C G A C T T C T C G C T C T T C A A G T C C A T A T C C A G A T T C C A A T G C T T T A G C C C A T A T C T C C A T C T T C T G G C A A A G C A G A T C T T T C T C C C T C A A C C T T C A C T C A C T G G A T C G A A G C T A T C A A C T A A C G A G T G A A G C T T A T C T C A A C C A T C C C T C T G C C T C A A G G C A A T G C A C T C C G G G C T C A G A A G C A C C A G A A C C T G C T G T A G C T G C A T A T G A C C C T C G A A A G G A A G T A C C A G C G A A G A G G C T C C T G G A T C A A A T G C C T C T C T G A 50 100 150 200 250 300 350 400 Score = Score = Score = Sequence mobidb-lite mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 27..61
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 100..137
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 40..61
Relationships
The following mRNA feature(s) are a part of this gene: