Lag0000724 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000724
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon protein
Locationchr4: 14117549 .. 14118121 (+)
RNA-Seq ExpressionLag0000724
SyntenyLag0000724
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGGGCATCCTATCGCAAAAGACATGCGTAACAAGCCTTTCCTGCATTTCGAAGACTTGGCATATGTCTTTGGGAAGGATCGAGCCACAGGGAAGGTGTCGGAGGTGATGGGCGAGATGGGATCCAACATGCCAGATGATGAGGTAGACCTCAGTGCATCCCCAGAGAACGACACCCACATCCCACCGTTCACCATGCCTATTGCGAACATGTCAGAGGATGAACCTTGGGATACGCCAAACAGTCAAACTTGCCCAACAGGAAGGCCGTCACATGGGAGCAAGAGGAAGAGGTCTGGGTCTGACACGCACATAGCAGAAATTGTCACCTCATTTACAGAGCAACTGAAGTCAATTGCAGAGTGGTCGAAAGAAAAACGTGCCACAGAGGCTGACTTCCGAGATAAAATTGTCACCCACTTGATGGAGGTACCAGAATTGGATAACCGAAAGAGGGTGAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCGGTTGCTCTGAAGTTGGAGTATTGTGAACTCCTCCTGGACAAACTCGGCTGA

mRNA sequence

ATGCAAGGGCATCCTATCGCAAAAGACATGCGTAACAAGCCTTTCCTGCATTTCGAAGACTTGGCATATGTCTTTGGGAAGGATCGAGCCACAGGGAAGGTGTCGGAGGTGATGGGCGAGATGGGATCCAACATGCCAGATGATGAGGTAGACCTCAGTGCATCCCCAGAGAACGACACCCACATCCCACCGTTCACCATGCCTATTGCGAACATGTCAGAGGATGAACCTTGGGATACGCCAAACAGTCAAACTTGCCCAACAGGAAGGCCGTCACATGGGAGCAAGAGGAAGAGGTCTGGGTCTGACACGCACATAGCAGAAATTGTCACCTCATTTACAGAGCAACTGAAGTCAATTGCAGAGTGGTCGAAAGAAAAACGTGCCACAGAGGCTGACTTCCGAGATAAAATTGTCACCCACTTGATGGAGGTACCAGAATTGGATAACCGAAAGAGGGTGAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCGGTTGCTCTGAAGTTGGAGTATTGTGAACTCCTCCTGGACAAACTCGGCTGA

Coding sequence (CDS)

ATGCAAGGGCATCCTATCGCAAAAGACATGCGTAACAAGCCTTTCCTGCATTTCGAAGACTTGGCATATGTCTTTGGGAAGGATCGAGCCACAGGGAAGGTGTCGGAGGTGATGGGCGAGATGGGATCCAACATGCCAGATGATGAGGTAGACCTCAGTGCATCCCCAGAGAACGACACCCACATCCCACCGTTCACCATGCCTATTGCGAACATGTCAGAGGATGAACCTTGGGATACGCCAAACAGTCAAACTTGCCCAACAGGAAGGCCGTCACATGGGAGCAAGAGGAAGAGGTCTGGGTCTGACACGCACATAGCAGAAATTGTCACCTCATTTACAGAGCAACTGAAGTCAATTGCAGAGTGGTCGAAAGAAAAACGTGCCACAGAGGCTGACTTCCGAGATAAAATTGTCACCCACTTGATGGAGGTACCAGAATTGGATAACCGAAAGAGGGTGAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCGGTTGCTCTGAAGTTGGAGTATTGTGAACTCCTCCTGGACAAACTCGGCTGA

Protein sequence

MQGHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASPENDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKRKRSGSDTHIAEIVTSFTEQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYCELLLDKLG
Homology
BLAST of Lag0000724 vs. NCBI nr
Match: XP_038899283.1 (uncharacterized protein LOC120086622 [Benincasa hispida] >XP_038899284.1 uncharacterized protein LOC120086622 [Benincasa hispida] >XP_038899285.1 uncharacterized protein LOC120086622 [Benincasa hispida] >XP_038899286.1 uncharacterized protein LOC120086622 [Benincasa hispida])

HSP 1 Score: 138.3 bits (347), Expect = 7.0e-29
Identity = 76/190 (40.00%), Postives = 117/190 (61.58%), Query Frame = 0

Query: 1   MQGHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASPENDT 60
           ++ HP  K + NK F +F+DLAYVFGKD ATG+ +E+ G+M S++P    + +++ ++  
Sbjct: 36  VKSHPATKGLLNKSFSYFDDLAYVFGKDWATGEGAEIPGDMASSVPGCMHEGASTDDSQE 95

Query: 61  HIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKRKRSGSDTHIAEIVTS----FTEQ 120
           H         ++S+DE   TP            GSKRK  G  + + ++  +      +Q
Sbjct: 96  H---------DLSQDEFHGTPTGFGFEGDNSLRGSKRKHHGYHSELVKVFKNAMDFANDQ 155

Query: 121 LKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVA 180
           LKSIAEWSK++ ATE + R K+V  L ++P+L  ++++K M+I+F N+  TESF SIP  
Sbjct: 156 LKSIAEWSKKQHATEVELRAKVVNKLNDIPKLQTQQKMKFMNIIFRNVHNTESFLSIPAD 215

Query: 181 LKLEYCELLL 187
           +KLEYCELLL
Sbjct: 216 MKLEYCELLL 216

BLAST of Lag0000724 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-28
Identity = 82/196 (41.84%), Postives = 113/196 (57.65%), Query Frame = 0

Query: 1   MQGHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMG---SNMPDDEVDLSASPE 60
           ++ HP AK + +K F +++DL+YVFGKDRATG  SE    +G   SNM +D + L  S +
Sbjct: 112 IKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHD 171

Query: 61  NDTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKRKRSGSDTHIAEIVTSF---- 120
            D  IP       +MS DE +     Q       S  SKRKR        E++ S     
Sbjct: 172 ED--IPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFG 231

Query: 121 TEQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSI 180
            EQLK+IA+W KEKRA E + R ++V  L ++P+L ++ R KLM ILF +++A E F SI
Sbjct: 232 NEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSI 291

Query: 181 PVALKLEYCELLLDKL 190
           P  LKLEYC +LL  +
Sbjct: 292 PTELKLEYCNILLQNI 305

BLAST of Lag0000724 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 1.0e-27
Identity = 82/193 (42.49%), Postives = 112/193 (58.03%), Query Frame = 0

Query: 2   QGHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMG---SNMPDDEVDLSASPEN 61
           + HP AK + +K F +++DL+YVFG D ATG  SE   + G   SNM +D V L  S   
Sbjct: 70  RSHPAAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQ 129

Query: 62  DTHIPPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKRKRSGSDTHIAEIVTSFTE--- 121
           D  I        +MS DE +     Q       S GSKRKR      + E+++S TE   
Sbjct: 130 D--ILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATEFGN 189

Query: 122 -QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIP 181
            QLK+I +W KEKRATE + R ++V  L ++P+L ++ R KLM ILF +++A E F SIP
Sbjct: 190 DQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIP 249

Query: 182 VALKLEYCELLLD 188
             LKLEYC +LL+
Sbjct: 250 TKLKLEYCNILLE 260

BLAST of Lag0000724 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 8.6e-27
Identity = 77/184 (41.85%), Postives = 106/184 (57.61%), Query Frame = 0

Query: 8   KDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPD-DEVDLSASPENDTHIPPFT 67
           KD+ +K F +++DL YVFGKDRAT   SE   ++GSN+P+    D+     +D  IP   
Sbjct: 312 KDLLHKSFPYYDDLFYVFGKDRATRARSETFADVGSNVPNMFNGDVPLDDSHDQDIPMMY 371

Query: 68  MPIANMSEDEPWDTPNSQTCPTGRPSHGSKRKRSGSDTHIAEIVTSFTE----QLKSIAE 127
               +MS DE +     Q       S GSKRK+        E++ S  E    QLK+IA 
Sbjct: 372 SQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAIAN 431

Query: 128 WSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALKLEYC 187
           W KEKRATE + R +++  L ++PEL +R R KL+ ILF +++A E F SIP   KLEYC
Sbjct: 432 WPKEKRATEVELRAEVMKQLQDIPELQSRDRAKLIQILFRSVEAIEGFLSIPTERKLEYC 491

BLAST of Lag0000724 vs. NCBI nr
Match: KAA0046928.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 2.5e-26
Identity = 76/190 (40.00%), Postives = 104/190 (54.74%), Query Frame = 0

Query: 3   GHPIAKDMRNKPFLHFEDLAYVFGKDRATGKVSEVMGEMGSNMPDDEVDLSASPENDTHI 62
           GHP AK + NK F+H+++L+YVFGKDRATG  +E+  ++GSN P      +A    DT  
Sbjct: 83  GHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAEIFADIGSNDPPGFDAFAADAMPDTDF 142

Query: 63  PPFTMPIANMSEDEPWDTPNSQTCPTGRPSHGSKRKRSGSDTHIAEIVTSF----TEQLK 122
           PP   P  NMS D+  +T  ++       S GSKRKR G  T   +IV +      EQL 
Sbjct: 143 PPTYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLH 202

Query: 123 SIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKATESFFSIPVALK 182
            IAEW   +R      R +IV HL  +PEL    R +LM IL  N+   ++F  +P  +K
Sbjct: 203 RIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMK 262

Query: 183 LEYCELLLDK 189
             YC L+L +
Sbjct: 263 YPYCTLILQE 272

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038899283.17.0e-2940.00uncharacterized protein LOC120086622 [Benincasa hispida] >XP_038899284.1 unchara... [more]
XP_008441954.11.6e-2841.84PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... [more]
KAA0031678.11.0e-2742.49retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p... [more]
KAA0033290.18.6e-2741.85putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas... [more]
KAA0046928.12.5e-2640.00retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..91
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 2..187

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000724.1Lag0000724.1mRNA