Lag0019980 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0019980
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTraB domain-containing protein
Locationchr5: 47152635 .. 47153093 (+)
RNA-Seq ExpressionLag0019980
SyntenyLag0019980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTTAAAGCTCGCTCCTTTTTCTTATCTTCTCCCTCTGCCTCCTCTTCCCTGGTTTCATCAATGGAAGCTCTTAAATCCGCGGCCATTCCCATTTTCAGGCCCTACCCAGTTTCAATCCCGACTAAATCTCTGAAACCCACCAAGGTTTCGATTAGGCCGCCCCCATCGGGCTTTGATTTCCGATTGGAGATCTCTCGGGATTCCAGAGCCGCCATTGTTGAAGCTCACCCTGAGTTGCTTGATCTGGCTGACGATGGCACGTTGGTTTTGGTCGAGAAGAGGAGATTTGGCCCTGTGCCCGCCTGGAGATCTGAATTTGTGGAGCCCGAAGCGATATGGCTGCTCGGAACTTCGCACATTTCGCCGAAATCGGTTAAGGATGTCGAGCGAGTTGTTCGAGCTGTGAAGCCTGATAATGTCGTGGTCGAGCTTTGCAGGAGCAGGCAAGTTTGA

mRNA sequence

ATGGCCGTTAAAGCTCGCTCCTTTTTCTTATCTTCTCCCTCTGCCTCCTCTTCCCTGGTTTCATCAATGGAAGCTCTTAAATCCGCGGCCATTCCCATTTTCAGGCCCTACCCAGTTTCAATCCCGACTAAATCTCTGAAACCCACCAAGGTTTCGATTAGGCCGCCCCCATCGGGCTTTGATTTCCGATTGGAGATCTCTCGGGATTCCAGAGCCGCCATTGTTGAAGCTCACCCTGAGTTGCTTGATCTGGCTGACGATGGCACGTTGGTTTTGGTCGAGAAGAGGAGATTTGGCCCTGTGCCCGCCTGGAGATCTGAATTTGTGGAGCCCGAAGCGATATGGCTGCTCGGAACTTCGCACATTTCGCCGAAATCGGTTAAGGATGTCGAGCGAGTTGTTCGAGCTGTGAAGCCTGATAATGTCGTGGTCGAGCTTTGCAGGAGCAGGCAAGTTTGA

Coding sequence (CDS)

ATGGCCGTTAAAGCTCGCTCCTTTTTCTTATCTTCTCCCTCTGCCTCCTCTTCCCTGGTTTCATCAATGGAAGCTCTTAAATCCGCGGCCATTCCCATTTTCAGGCCCTACCCAGTTTCAATCCCGACTAAATCTCTGAAACCCACCAAGGTTTCGATTAGGCCGCCCCCATCGGGCTTTGATTTCCGATTGGAGATCTCTCGGGATTCCAGAGCCGCCATTGTTGAAGCTCACCCTGAGTTGCTTGATCTGGCTGACGATGGCACGTTGGTTTTGGTCGAGAAGAGGAGATTTGGCCCTGTGCCCGCCTGGAGATCTGAATTTGTGGAGCCCGAAGCGATATGGCTGCTCGGAACTTCGCACATTTCGCCGAAATCGGTTAAGGATGTCGAGCGAGTTGTTCGAGCTGTGAAGCCTGATAATGTCGTGGTCGAGCTTTGCAGGAGCAGGCAAGTTTGA

Protein sequence

MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGFDFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTSHISPKSVKDVERVVRAVKPDNVVVELCRSRQV
Homology
BLAST of Lag0019980 vs. NCBI nr
Match: XP_022968022.1 (traB domain-containing protein isoform X1 [Cucurbita maxima])

HSP 1 Score: 250.4 bits (638), Expect = 1.0e-62
Identity = 130/150 (86.67%), Postives = 135/150 (90.00%), Query Frame = 0

Query: 1   MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGF 60
           MAVKA  FFLSS        SSMEALKS AIPIFRPYPVSIPTKS+KPTKVSIRPPPS F
Sbjct: 1   MAVKAPFFFLSS--------SSMEALKSTAIPIFRPYPVSIPTKSIKPTKVSIRPPPSDF 60

Query: 61  DFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTS 120
           DFR+E+SRDSRAAI EAHPELLDL DDGTLVLVEKRRFGPVPAWR+EFVEPEAIWL+ TS
Sbjct: 61  DFRVELSRDSRAAIAEAHPELLDLVDDGTLVLVEKRRFGPVPAWRAEFVEPEAIWLVATS 120

Query: 121 HISPKSVKDVERVVRAVKPDNVVVELCRSR 151
           HISPKSVKDVERVVRAVKPDNVVVELCRSR
Sbjct: 121 HISPKSVKDVERVVRAVKPDNVVVELCRSR 142

BLAST of Lag0019980 vs. NCBI nr
Match: XP_023542003.1 (traB domain-containing protein isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.2 bits (622), Expect = 7.3e-61
Identity = 128/150 (85.33%), Postives = 132/150 (88.00%), Query Frame = 0

Query: 1   MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGF 60
           MAVKA  FFLSS        SSMEALKS AIPIFRPYP SI TKS+KP KVSIRPPPS F
Sbjct: 1   MAVKATFFFLSS--------SSMEALKSTAIPIFRPYPFSIATKSMKPIKVSIRPPPSDF 60

Query: 61  DFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTS 120
           DFR+EISRDSRAAI EAHPELLDL DDGTLVLVEKRRFGPVPAWR+EFVEPEAIWL+ TS
Sbjct: 61  DFRVEISRDSRAAIAEAHPELLDLVDDGTLVLVEKRRFGPVPAWRAEFVEPEAIWLVATS 120

Query: 121 HISPKSVKDVERVVRAVKPDNVVVELCRSR 151
           HISPKSVKDVERVVRAVKPDNVVVELCRSR
Sbjct: 121 HISPKSVKDVERVVRAVKPDNVVVELCRSR 142

BLAST of Lag0019980 vs. NCBI nr
Match: KAE8650450.1 (hypothetical protein Csa_011235 [Cucumis sativus])

HSP 1 Score: 243.4 bits (620), Expect = 1.2e-60
Identity = 125/150 (83.33%), Postives = 133/150 (88.67%), Query Frame = 0

Query: 1   MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGF 60
           MAVK RSFFLSS S S SL+SSMEALKS AIPIF+  P+S PTKSLKP  VSI PPPS F
Sbjct: 1   MAVKGRSFFLSSSSPSISLLSSMEALKSTAIPIFKSSPLSFPTKSLKPINVSINPPPSDF 60

Query: 61  DFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTS 120
           DFRLEISRDSRA I E HPELLDLADDG LVLV+K +FGPVPAWR+EFVEP+AIWL+GTS
Sbjct: 61  DFRLEISRDSRATIAETHPELLDLADDGILVLVDKTKFGPVPAWRAEFVEPQAIWLVGTS 120

Query: 121 HISPKSVKDVERVVRAVKPDNVVVELCRSR 151
           HISPKSVKDVERVVRAVKPDNVVVELCRSR
Sbjct: 121 HISPKSVKDVERVVRAVKPDNVVVELCRSR 150

BLAST of Lag0019980 vs. NCBI nr
Match: XP_004140793.1 (traB domain-containing protein isoform X1 [Cucumis sativus])

HSP 1 Score: 243.4 bits (620), Expect = 1.2e-60
Identity = 125/150 (83.33%), Postives = 133/150 (88.67%), Query Frame = 0

Query: 1   MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGF 60
           MAVK RSFFLSS S S SL+SSMEALKS AIPIF+  P+S PTKSLKP  VSI PPPS F
Sbjct: 1   MAVKGRSFFLSSSSPSISLLSSMEALKSTAIPIFKSSPLSFPTKSLKPINVSINPPPSDF 60

Query: 61  DFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTS 120
           DFRLEISRDSRA I E HPELLDLADDG LVLV+K +FGPVPAWR+EFVEP+AIWL+GTS
Sbjct: 61  DFRLEISRDSRATIAETHPELLDLADDGILVLVDKTKFGPVPAWRAEFVEPQAIWLVGTS 120

Query: 121 HISPKSVKDVERVVRAVKPDNVVVELCRSR 151
           HISPKSVKDVERVVRAVKPDNVVVELCRSR
Sbjct: 121 HISPKSVKDVERVVRAVKPDNVVVELCRSR 150

BLAST of Lag0019980 vs. NCBI nr
Match: XP_022945049.1 (traB domain-containing protein isoform X1 [Cucurbita moschata])

HSP 1 Score: 240.4 bits (612), Expect = 1.0e-59
Identity = 126/150 (84.00%), Postives = 131/150 (87.33%), Query Frame = 0

Query: 1   MAVKARSFFLSSPSASSSLVSSMEALKSAAIPIFRPYPVSIPTKSLKPTKVSIRPPPSGF 60
           MAVKA  FFLSS        SSME+LKS  IPIFRPYP SI TKS+KP KVSIRPPPS F
Sbjct: 37  MAVKAPFFFLSS--------SSMESLKSTPIPIFRPYPFSIATKSVKPIKVSIRPPPSDF 96

Query: 61  DFRLEISRDSRAAIVEAHPELLDLADDGTLVLVEKRRFGPVPAWRSEFVEPEAIWLLGTS 120
           DFR+EISRDSRAAI EAHPELLDL DDGTLVLVEKRRFGPVPAWR+EFVEPEAIWL+ TS
Sbjct: 97  DFRVEISRDSRAAIAEAHPELLDLVDDGTLVLVEKRRFGPVPAWRAEFVEPEAIWLVATS 156

Query: 121 HISPKSVKDVERVVRAVKPDNVVVELCRSR 151
           HISPKSVKDVERVVRAVKPDNVVVELCRSR
Sbjct: 157 HISPKSVKDVERVVRAVKPDNVVVELCRSR 178

BLAST of Lag0019980 vs. ExPASy Swiss-Prot
Match: Q58DF3 (TraB domain-containing protein OS=Bos taurus OX=9913 GN=TRABD PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.9e-04
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 0

Query: 74  IVEAHPELLDLADDGTLVL---VEKRRFGP-VPAWRSEFVEPEA--IWLLGTSHISPKSV 133
           ++   P+ L   D   L+L   +++RR  P +P   +E V  +   ++++GT+H S  S 
Sbjct: 29  VLPGDPQNLSDVDAFNLLLEMKLKRRRERPNLPHTVTELVAEDGSRVYVVGTAHFSDDSK 88

Query: 134 KDVERVVRAVKPDNVVVELCRSR 151
           +DV + +R V+PD VVVELC+ R
Sbjct: 89  RDVVKTIREVQPDVVVVELCQYR 111

BLAST of Lag0019980 vs. ExPASy Swiss-Prot
Match: Q9H4I3 (TraB domain-containing protein OS=Homo sapiens OX=9606 GN=TRABD PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.8e-04
Identity = 28/83 (33.73%), Postives = 49/83 (59.04%), Query Frame = 0

Query: 74  IVEAHPELLDLADDGTLVL---VEKRRFGP-VPAWRSEFVEPEA--IWLLGTSHISPKSV 133
           ++   P+ L   D   L+L   +++RR  P +P   ++ V  +   ++++GT+H S  S 
Sbjct: 29  VLSGDPQNLSDVDAFNLLLEMKLKRRRQRPNLPRTVTQLVAEDGSRVYVVGTAHFSDDSK 88

Query: 134 KDVERVVRAVKPDNVVVELCRSR 151
           +DV + +R V+PD VVVELC+ R
Sbjct: 89  RDVVKTIREVQPDVVVVELCQYR 111

BLAST of Lag0019980 vs. ExPASy Swiss-Prot
Match: Q99JY4 (TraB domain-containing protein OS=Mus musculus OX=10090 GN=Trabd PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 8.5e-04
Identity = 27/83 (32.53%), Postives = 49/83 (59.04%), Query Frame = 0

Query: 74  IVEAHPELLDLADDGTLVL---VEKRRFGP-VPAWRSEFVEPEA--IWLLGTSHISPKSV 133
           ++   P+ +   D   L+L   +++RR  P +P   ++ V  +   ++++GT+H S  S 
Sbjct: 28  VLAGDPQNISDVDAFNLLLEMKLKRRRERPNLPRTVTQLVAEDGSRVYVVGTAHFSDDSK 87

Query: 134 KDVERVVRAVKPDNVVVELCRSR 151
           +DV + +R V+PD VVVELC+ R
Sbjct: 88  RDVVKTIREVQPDVVVVELCQYR 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022968022.11.0e-6286.67traB domain-containing protein isoform X1 [Cucurbita maxima][more]
XP_023542003.17.3e-6185.33traB domain-containing protein isoform X1 [Cucurbita pepo subsp. pepo][more]
KAE8650450.11.2e-6083.33hypothetical protein Csa_011235 [Cucumis sativus][more]
XP_004140793.11.2e-6083.33traB domain-containing protein isoform X1 [Cucumis sativus][more]
XP_022945049.11.0e-5984.00traB domain-containing protein isoform X1 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Q58DF32.9e-0434.94TraB domain-containing protein OS=Bos taurus OX=9913 GN=TRABD PE=2 SV=1[more]
Q9H4I33.8e-0433.73TraB domain-containing protein OS=Homo sapiens OX=9606 GN=TRABD PE=1 SV=1[more]
Q99JY48.5e-0432.53TraB domain-containing protein OS=Mus musculus OX=10090 GN=Trabd PE=1 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002816TraB/PrgY/GumN familyPFAMPF01963TraBcoord: 104..150
e-value: 1.0E-8
score: 35.4
NoneNo IPR availablePANTHERPTHR21530:SF0TRAB DOMAIN-CONTAINING PROTEINcoord: 46..150
NoneNo IPR availablePANTHERPTHR21530PHEROMONE SHUTDOWN PROTEINcoord: 46..150
NoneNo IPR availableCDDcd14726TraB_PrgY-likecoord: 114..150
e-value: 7.55947E-16
score: 68.7533

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0019980.1Lag0019980.1mRNA