Lag0018849 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0018849
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionIdentified as a screen for stress-responsive genes.
Locationchr5: 35393035 .. 35393541 (+)
RNA-Seq ExpressionLag0018849
SyntenyLag0018849
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGATGGCTACTCCAAAATCAAAGCCGCCTGCAAATTCAAATCAAGATCCATAGATTACTCCGATCTCTCATCGCTTCCTCACTCTCTCAGATTCAGCGCCGCCGTCGACTCCAATCCCAACTCTCATGATTCCGATCACAACAGGACGAATCGGCCGCGAGAGCCGCCGCACGGCCGCTTGCCGGAGGAGGAGGAGGAAGAAGAATACGGCGGCGCCGCCACTGCCTCTGCTGCAGCGGTTCTGAGTCGGAACGGCTCTGTTTCTTCATCGGCCTCCGGATTCCACTCGGCGGTGAAGAGAGCTCTGTCGATGCGGCGATCTTCGTCCGTGGCGGAGCGGTACTGTAGGATTCACGATCAGTTCGCGACGTTGATCGACGACGATGAAATCGAAGGCGAAGATGCGAAGGAAGGGCGAAAAACAGGAGGATCTGTGAGGAAGAAGAAGAAGAACGCGGCAGGGAAGATCGTTAGAGCCTGTAAGCGACTTTTTGGACTGTAG

mRNA sequence

ATGGCTGATGGCTACTCCAAAATCAAAGCCGCCTGCAAATTCAAATCAAGATCCATAGATTACTCCGATCTCTCATCGCTTCCTCACTCTCTCAGATTCAGCGCCGCCGTCGACTCCAATCCCAACTCTCATGATTCCGATCACAACAGGACGAATCGGCCGCGAGAGCCGCCGCACGGCCGCTTGCCGGAGGAGGAGGAGGAAGAAGAATACGGCGGCGCCGCCACTGCCTCTGCTGCAGCGGTTCTGAGTCGGAACGGCTCTGTTTCTTCATCGGCCTCCGGATTCCACTCGGCGGTGAAGAGAGCTCTGTCGATGCGGCGATCTTCGTCCGTGGCGGAGCGGTACTGTAGGATTCACGATCAGTTCGCGACGTTGATCGACGACGATGAAATCGAAGGCGAAGATGCGAAGGAAGGGCGAAAAACAGGAGGATCTGTGAGGAAGAAGAAGAAGAACGCGGCAGGGAAGATCGTTAGAGCCTGTAAGCGACTTTTTGGACTGTAG

Coding sequence (CDS)

ATGGCTGATGGCTACTCCAAAATCAAAGCCGCCTGCAAATTCAAATCAAGATCCATAGATTACTCCGATCTCTCATCGCTTCCTCACTCTCTCAGATTCAGCGCCGCCGTCGACTCCAATCCCAACTCTCATGATTCCGATCACAACAGGACGAATCGGCCGCGAGAGCCGCCGCACGGCCGCTTGCCGGAGGAGGAGGAGGAAGAAGAATACGGCGGCGCCGCCACTGCCTCTGCTGCAGCGGTTCTGAGTCGGAACGGCTCTGTTTCTTCATCGGCCTCCGGATTCCACTCGGCGGTGAAGAGAGCTCTGTCGATGCGGCGATCTTCGTCCGTGGCGGAGCGGTACTGTAGGATTCACGATCAGTTCGCGACGTTGATCGACGACGATGAAATCGAAGGCGAAGATGCGAAGGAAGGGCGAAAAACAGGAGGATCTGTGAGGAAGAAGAAGAAGAACGCGGCAGGGAAGATCGTTAGAGCCTGTAAGCGACTTTTTGGACTGTAG

Protein sequence

MADGYSKIKAACKFKSRSIDYSDLSSLPHSLRFSAAVDSNPNSHDSDHNRTNRPREPPHGRLPEEEEEEEYGGAATASAAAVLSRNGSVSSSASGFHSAVKRALSMRRSSSVAERYCRIHDQFATLIDDDEIEGEDAKEGRKTGGSVRKKKKNAAGKIVRACKRLFGL
Homology
BLAST of Lag0018849 vs. NCBI nr
Match: KAG7031359.1 (hypothetical protein SDJN02_05399, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 240.0 bits (611), Expect = 1.5e-59
Identity = 140/171 (81.87%), Postives = 149/171 (87.13%), Query Frame = 0

Query: 1   MADGYSKIKAACKFKSRSIDYSDLSSLPHSLRFSAAVDSNPNSHDSDHNRTNRPREPPHG 60
           MAD YSKI+AACK KSRS+DYSDLSSLPHSLRF+AA DSNPNS DSD NRTNR REPPHG
Sbjct: 1   MADTYSKIEAACKLKSRSVDYSDLSSLPHSLRFAAA-DSNPNSRDSDQNRTNRSREPPHG 60

Query: 61  RLPEEEEEEEYGGAATASAAAVLSRNGSVSSSASGFHSAVKRALSMRRSSSVAERYCRIH 120
            LP EEEE+EY  AATA+ A+ L RN SVS+SASGFHSAVKRALSMRRSSSVAERY RIH
Sbjct: 61  CLP-EEEEDEYRSAATAT-ASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIH 120

Query: 121 DQFATL---IDDDEIEGEDAKEGRKTGGSVRKKKKNAAGKIVRACKRLFGL 169
           DQF TL   IDDDEIEGE++KEGR  GGSVRKKK NAAGKIVRACKRLFGL
Sbjct: 121 DQFGTLASPIDDDEIEGEESKEGRNAGGSVRKKKTNAAGKIVRACKRLFGL 168

BLAST of Lag0018849 vs. NCBI nr
Match: KAG7015455.1 (hypothetical protein SDJN02_23091, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.3 bits (573), Expect = 3.9e-55
Identity = 138/181 (76.24%), Postives = 148/181 (81.77%), Query Frame = 0

Query: 1   MADGYSKIKAACKFKSRSIDYSDLSSLPHSLRFSAAVD-SNPNSHDSDHNRTNRPREPPH 60
           MAD YSKIKAACKFKSRSIDYSDL+SLPHS RF+AA   SNPNSHDS+ N+TNR     H
Sbjct: 1   MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNR----QH 60

Query: 61  GRLPEEEEEE-----EYGGAATASAAAVLSRNGSVSSSASGFHSAVKRALSMRRSSSVAE 120
            RLPEEEEEE     EYGG  +A AAA LSRN SVSSS SGFHSAVKRALSMRRSSSVAE
Sbjct: 61  SRLPEEEEEEEEEEDEYGGEVSARAAA-LSRNNSVSSSVSGFHSAVKRALSMRRSSSVAE 120

Query: 121 RYCRIHDQFATL---IDDDEIEGEDAKEGRKTGGSV----RKKKKNAAGKIVRACKRLFG 169
           RYCRIHDQFATL   IDDDE+E  D+KE RKTGGSV    +KKKKN+AGKIVRACKRLFG
Sbjct: 121 RYCRIHDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAGKIVRACKRLFG 176

BLAST of Lag0018849 vs. NCBI nr
Match: KAG6600720.1 (hypothetical protein SDJN03_05953, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223.4 bits (568), Expect = 1.5e-54
Identity = 133/164 (81.10%), Postives = 141/164 (85.98%), Query Frame = 0

Query: 1   MADGYSKIKAACKFKSRSIDYSDLSSLPHSLRFSAAVDSNPNSHDSDHNRTNRPREPPHG 60
           MAD YSKI+AACK KSRS DYSDLSSLPHSLRF+AA DSNPNS DSD NRTNR REPPHG
Sbjct: 1   MADTYSKIEAACKLKSRSADYSDLSSLPHSLRFAAA-DSNPNSRDSDQNRTNRSREPPHG 60

Query: 61  RLPEEEEEEEYGGAATASAAAVLSRNGSVSSSASGFHSAVKRALSMRRSSSVAERYCRIH 120
            LP EEEE+EY  AATA+ A+ L RN SVS+SASGFHSAVKRALSMRRSSSVAERY RIH
Sbjct: 61  CLP-EEEEDEYRSAATAT-ASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIH 120

Query: 121 DQFATL---IDDDEIEGEDAKEGRKTGGSVRKKKKNAAGKIVRA 162
           DQF TL   IDDDEIEGE++KEGR  GGSVRKKK NAAGKIVRA
Sbjct: 121 DQFGTLASPIDDDEIEGEESKEGRNAGGSVRKKKTNAAGKIVRA 161

BLAST of Lag0018849 vs. NCBI nr
Match: XP_022929198.1 (uncharacterized protein LOC111435863 [Cucurbita moschata] >KAG6577366.1 hypothetical protein SDJN03_24940, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 222.2 bits (565), Expect = 3.3e-54
Identity = 137/181 (75.69%), Postives = 147/181 (81.22%), Query Frame = 0

Query: 1   MADGYSKIKAACKFKSRSIDYSDLSSLPHSLRFSAAVD-SNPNSHDSDHNRTNRPREPPH 60
           MAD YSKIKAACKFKSRSIDYSDL+SLPHS RF+AA   SNPNSHDS+ N+TNR     H
Sbjct: 1   MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNR----QH 60

Query: 61  GRLPEEEEEE-----EYGGAATASAAAVLSRNGSVSSSASGFHSAVKRALSMRRSSSVAE 120
            RLPEEEEEE     EYGG  +A AAA LSRN SVSSS SGFHSAVKRALSMRRSSSVAE
Sbjct: 61  SRLPEEEEEEEEEEDEYGGEVSARAAA-LSRNNSVSSSVSGFHSAVKRALSMRRSSSVAE 120

Query: 121 RYCRIHDQFATL---IDDDEIEGEDAKEGRKTGGSV----RKKKKNAAGKIVRACKRLFG 169
           RYCRIHDQFATL   IDDDE+E  D+KE RKTGGSV    +KKKKN+A KIVRACKRLFG
Sbjct: 121 RYCRIHDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAEKIVRACKRLFG 176

BLAST of Lag0018849 vs. NCBI nr
Match: XP_022136741.1 (uncharacterized protein LOC111008371 [Momordica charantia])

HSP 1 Score: 218.0 bits (554), Expect = 6.2e-53
Identity = 133/173 (76.88%), Postives = 142/173 (82.08%), Query Frame = 0

Query: 1   MADGYSKIKAACKFKSRSIDYSDLSSLPHSLRFSAAVDSNPNS--HDSDHNRTNRPREPP 60
           MADGYSKIKAACKFKSRSIDYSDL+SLPHSL+F+AAV  NPNS  H+SD NR NR R   
Sbjct: 1   MADGYSKIKAACKFKSRSIDYSDLASLPHSLKFTAAV-PNPNSLAHESDQNRANRAR--A 60

Query: 61  HGRLPEEEEEEEYGGAATASAAAVLSRNGSVSSSASGFHSAVKRALSMRRSSSVAERYCR 120
              LPEEEE+E  GG   A AA  LSRN SVSSSASG HSAVKRALSMRRSSSVAERYCR
Sbjct: 61  QSCLPEEEEDEYGGGGGVAVAA--LSRNSSVSSSASGLHSAVKRALSMRRSSSVAERYCR 120

Query: 121 IHDQFATL---IDDDEIEGEDAKEGRKTGGSVRKKKKNAAGKIVRACKRLFGL 169
           IHDQFATL   IDD+EI   D+KE RK+ GSVR+KKKNAAGKIVRACKRLFGL
Sbjct: 121 IHDQFATLASPIDDEEIGAGDSKESRKSAGSVRRKKKNAAGKIVRACKRLFGL 168

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7031359.11.5e-5981.87hypothetical protein SDJN02_05399, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7015455.13.9e-5576.24hypothetical protein SDJN02_23091, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6600720.11.5e-5481.10hypothetical protein SDJN03_05953, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022929198.13.3e-5475.69uncharacterized protein LOC111435863 [Cucurbita moschata] >KAG6577366.1 hypothet... [more]
XP_022136741.16.2e-5376.88uncharacterized protein LOC111008371 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..153
NoneNo IPR availablePANTHERPTHR38386:SF6OS05G0426900 PROTEINcoord: 3..168
NoneNo IPR availablePANTHERPTHR38386OS05G0426900 PROTEINcoord: 3..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0018849.1Lag0018849.1mRNA